RNA–Protein interactions for RNA: ENST00000518743.1

HMGB1P23-201, Transcript of high mobility group box 1 pseudogene 23, humanhuman

BASIC

Gene HMGB1P23, Length 568 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P23-201ENST00000518743 TRPM4Q8TD43 1214 aa6.61□□□□□ -1.35
HMGB1P23-201ENST00000518743 CRBNQ96SW2 442 aa6.61□□□□□ -1.35
HMGB1P23-201ENST00000518743 SRRTQ9BXP5 876 aaKnown RBP6.61□□□□□ -1.35
HMGB1P23-201ENST00000518743 LRRC3Q9BY71 257 aa6.61□□□□□ -1.35
HMGB1P23-201ENST00000518743 MIR1-1HGQ9H1L0 117 aa6.61□□□□□ -1.35
HMGB1P23-201ENST00000518743 NMRK2Q9NPI5 230 aa6.61□□□□□ -1.35
HMGB1P23-201ENST00000518743 GINM1Q9NU53 330 aa6.61□□□□□ -1.35
HMGB1P23-201ENST00000518743 ZFATQ9P243 1243 aa6.61□□□□□ -1.35
HMGB1P23-201ENST00000518743 PRKAG3Q9UGI9 489 aa6.61□□□□□ -1.35
HMGB1P23-201ENST00000518743 GPN3Q9UHW5 284 aaPredicted RBP6.61□□□□□ -1.35
HMGB1P23-201ENST00000518743 CYP8B1Q9UNU6 501 aa6.61□□□□□ -1.35
HMGB1P23-201ENST00000518743 TOPAZ1Q8N9V7 1692 aa6.61□□□□□ -1.35
HMGB1P23-201ENST00000518743 SPATA31A3Q5VYP0 1347 aa6.6□□□□□ -1.35
HMGB1P23-201ENST00000518743 LOC102724428A0A0B4J2F2 783 aa6.6□□□□□ -1.35
HMGB1P23-201ENST00000518743 PF4P02776 101 aa6.6□□□□□ -1.35
HMGB1P23-201ENST00000518743 IBSPP21815 317 aaPredicted RBP6.6□□□□□ -1.35
HMGB1P23-201ENST00000518743 CTCFP49711 727 aaPredicted RBP6.6□□□□□ -1.35
HMGB1P23-201ENST00000518743 ZNF165P49910 485 aa6.6□□□□□ -1.35
HMGB1P23-201ENST00000518743 SIK1P57059 783 aa6.6□□□□□ -1.35
HMGB1P23-201ENST00000518743 MAP3K10Q02779 954 aa6.6□□□□□ -1.35
HMGB1P23-201ENST00000518743 RAB33AQ14088 237 aa6.6□□□□□ -1.35
HMGB1P23-201ENST00000518743 GRIN2CQ14957 1233 aa6.6□□□□□ -1.35
HMGB1P23-201ENST00000518743 MAP3K11Q16584 847 aa6.6□□□□□ -1.35
HMGB1P23-201ENST00000518743 RNF187Q5TA31 235 aaPredicted RBP6.6□□□□□ -1.35
HMGB1P23-201ENST00000518743 EGFLAMQ63HQ2 1017 aa6.6□□□□□ -1.35
HMGB1P23-201ENST00000518743 ANKS3Q6ZW76 656 aa6.6□□□□□ -1.35
HMGB1P23-201ENST00000518743 TRIM46Q7Z4K8 759 aa6.6□□□□□ -1.35
HMGB1P23-201ENST00000518743 CACTIN-AS1Q8N1I8 211 aa6.6□□□□□ -1.35
HMGB1P23-201ENST00000518743 BHMTQ93088 406 aa6.6□□□□□ -1.35
HMGB1P23-201ENST00000518743 NXPE3Q969Y0 559 aa6.6□□□□□ -1.35
HMGB1P23-201ENST00000518743 SRPK1Q96SB4 655 aaKnown RBP6.6□□□□□ -1.35
HMGB1P23-201ENST00000518743 EMILIN2Q9BXX0 1053 aa6.6□□□□□ -1.35
HMGB1P23-201ENST00000518743 PBX4Q9BYU1 374 aa6.6□□□□□ -1.35
HMGB1P23-201ENST00000518743 PIF1Q9H611 641 aa6.6□□□□□ -1.35
HMGB1P23-201ENST00000518743 SLC52A1Q9NWF4 448 aa6.6□□□□□ -1.35
HMGB1P23-201ENST00000518743 ABCA3Q99758 1704 aa6.59□□□□□ -1.35
HMGB1P23-201ENST00000518743 PLSCR1O15162 318 aa6.59□□□□□ -1.35
HMGB1P23-201ENST00000518743 BPNT1O95861 308 aa6.59□□□□□ -1.35
HMGB1P23-201ENST00000518743 MPP2Q14168 576 aa6.59□□□□□ -1.35
HMGB1P23-201ENST00000518743 BSNDQ8WZ55 320 aa6.59□□□□□ -1.35
HMGB1P23-201ENST00000518743 CLEC4MQ9H2X3 399 aaPredicted RBP6.59□□□□□ -1.35
HMGB1P23-201ENST00000518743 ZNF576Q9H609 170 aa6.59□□□□□ -1.35
HMGB1P23-201ENST00000518743 SEC31BQ9NQW1 1179 aa6.59□□□□□ -1.35
HMGB1P23-201ENST00000518743 STRN4Q9NRL3 753 aa6.59□□□□□ -1.35
HMGB1P23-201ENST00000518743 SLC35F4A4IF30 521 aa6.58□□□□□ -1.36
HMGB1P23-201ENST00000518743 ENPP3O14638 875 aa6.58□□□□□ -1.36
HMGB1P23-201ENST00000518743 ENC1O14682 589 aa6.58□□□□□ -1.36
HMGB1P23-201ENST00000518743 FBXO24O75426 580 aa6.58□□□□□ -1.36
HMGB1P23-201ENST00000518743 CELA3AP09093 270 aa6.58□□□□□ -1.36
HMGB1P23-201ENST00000518743 GARTP22102 1010 aa6.58□□□□□ -1.36
HMGB1P23-201ENST00000518743 GRIA4P48058 902 aa6.58□□□□□ -1.36
HMGB1P23-201ENST00000518743 LBX1P52954 281 aa6.58□□□□□ -1.36
HMGB1P23-201ENST00000518743 EIF6P56537 245 aaKnown RBP6.58□□□□□ -1.36
HMGB1P23-201ENST00000518743 FAM160A1Q05DH4 1040 aa6.58□□□□□ -1.36
HMGB1P23-201ENST00000518743 REXO1Q8N1G1 1221 aaKnown RBP6.58□□□□□ -1.36
HMGB1P23-201ENST00000518743 MICALL1Q8N3F8 863 aa6.58□□□□□ -1.36
HMGB1P23-201ENST00000518743 ASAP3Q8TDY4 903 aa6.58□□□□□ -1.36
HMGB1P23-201ENST00000518743 GATAD2BQ8WXI9 593 aa6.58□□□□□ -1.36
HMGB1P23-201ENST00000518743 KIFC2Q96AC6 838 aa6.58□□□□□ -1.36
HMGB1P23-201ENST00000518743 TRIM47Q96LD4 638 aa6.58□□□□□ -1.36
HMGB1P23-201ENST00000518743 CNTNAP3BQ96NU0 1288 aa6.58□□□□□ -1.36
HMGB1P23-201ENST00000518743 NSUN5Q96P11 429 aaKnown RBP6.58□□□□□ -1.36
HMGB1P23-201ENST00000518743 TRIM56Q9BRZ2 755 aaKnown RBP6.58□□□□□ -1.36
HMGB1P23-201ENST00000518743 CNTNAP3Q9BZ76 1288 aa6.58□□□□□ -1.36
HMGB1P23-201ENST00000518743 SENP2Q9HC62 589 aa6.58□□□□□ -1.36
HMGB1P23-201ENST00000518743 AVENQ9NQS1 362 aaPredicted RBP6.58□□□□□ -1.36
HMGB1P23-201ENST00000518743 NDFIP2Q9NV92 336 aa6.58□□□□□ -1.36
HMGB1P23-201ENST00000518743 PRR12Q9ULL5 1215 aa6.58□□□□□ -1.36
HMGB1P23-201ENST00000518743 COL14A1Q05707 1796 aaKnown RBP6.58□□□□□ -1.36
HMGB1P23-201ENST00000518743 KLF4O43474 513 aa6.57□□□□□ -1.36
HMGB1P23-201ENST00000518743 BNIP3LO60238 219 aa6.57□□□□□ -1.36
HMGB1P23-201ENST00000518743 NME2P22392 152 aa6.57□□□□□ -1.36
HMGB1P23-201ENST00000518743 PTSQ03393 145 aa6.57□□□□□ -1.36
HMGB1P23-201ENST00000518743 ANAPC16Q96DE5 110 aa6.57□□□□□ -1.36
HMGB1P23-201ENST00000518743 FERD3LQ96RJ6 166 aa6.57□□□□□ -1.36
HMGB1P23-201ENST00000518743 BRINP2Q9C0B6 783 aa6.57□□□□□ -1.36
HMGB1P23-201ENST00000518743 SLKQ9H2G2 1235 aaPredicted RBP6.57□□□□□ -1.36
HMGB1P23-201ENST00000518743 UBP1Q9NZI7 540 aa6.57□□□□□ -1.36
HMGB1P23-201ENST00000518743 WDR3Q9UNX4 943 aaKnown RBP eCLIP6.57□□□□□ -1.36
HMGB1P23-201ENST00000518743 TLR6Q9Y2C9 796 aa6.57□□□□□ -1.36
HMGB1P23-201ENST00000518743 CCDC144AA2RUR9 1427 aa6.57□□□□□ -1.36
HMGB1P23-201ENST00000518743 SBNO2Q9Y2G9 1366 aa6.57□□□□□ -1.36
HMGB1P23-201ENST00000518743 SPATA31A1Q5TZJ5 1347 aa6.56□□□□□ -1.36
HMGB1P23-201ENST00000518743 PTPRAP18433 802 aa6.56□□□□□ -1.36
HMGB1P23-201ENST00000518743 TFE3P19532 575 aaPredicted RBP6.56□□□□□ -1.36
HMGB1P23-201ENST00000518743 FGFR3P22607 806 aa6.56□□□□□ -1.36
HMGB1P23-201ENST00000518743 ETFBP38117 255 aa6.56□□□□□ -1.36
HMGB1P23-201ENST00000518743 IFRD2Q12894 506 aaPredicted RBP6.56□□□□□ -1.36
HMGB1P23-201ENST00000518743 UBAP2LQ14157 1087 aaKnown RBP6.56□□□□□ -1.36
HMGB1P23-201ENST00000518743 TXNRD1Q16881 649 aa6.56□□□□□ -1.36
HMGB1P23-201ENST00000518743 KRT28Q7Z3Y7 464 aa6.56□□□□□ -1.36
HMGB1P23-201ENST00000518743 DEPDC7Q96QD5 511 aa6.56□□□□□ -1.36
HMGB1P23-201ENST00000518743 CCDC113Q9H0I3 377 aa6.56□□□□□ -1.36
HMGB1P23-201ENST00000518743 PRKAB1Q9Y478 270 aa6.56□□□□□ -1.36
HMGB1P23-201ENST00000518743 TECPR2O15040 1411 aa6.56□□□□□ -1.36
HMGB1P23-201ENST00000518743 TNS3Q68CZ2 1445 aa6.56□□□□□ -1.36
HMGB1P23-201ENST00000518743 RRBP1Q9P2E9 1410 aaKnown RBP6.56□□□□□ -1.36
HMGB1P23-201ENST00000518743 NFKBIEO00221 500 aa6.55□□□□□ -1.36
HMGB1P23-201ENST00000518743 SIN3BO75182 1162 aa6.55□□□□□ -1.36
HMGB1P23-201ENST00000518743 B3GALT4O96024 378 aa6.55□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms