RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 NCAPHQ15003 741 aa10.64□□□□□ -0.71
NUP54-215ENST00000514313 PTPROQ16827 1216 aa10.64□□□□□ -0.71
NUP54-215ENST00000514313 RNF187Q5TA31 235 aaPredicted RBP10.64□□□□□ -0.71
NUP54-215ENST00000514313 EEPD1Q7L9B9 569 aa10.64□□□□□ -0.71
NUP54-215ENST00000514313 JMYQ8N9B5 988 aa10.64□□□□□ -0.71
NUP54-215ENST00000514313 DCAF11Q8TEB1 546 aa10.64□□□□□ -0.71
NUP54-215ENST00000514313 TMEM87BQ96K49 555 aa10.64□□□□□ -0.71
NUP54-215ENST00000514313 FANCD2OSQ96PS1 177 aa10.64□□□□□ -0.71
NUP54-215ENST00000514313 RUSC1Q9BVN2 902 aa10.64□□□□□ -0.71
NUP54-215ENST00000514313 FBRSQ9HAH7 460 aa10.64□□□□□ -0.71
NUP54-215ENST00000514313 PTCH2Q9Y6C5 1203 aa10.64□□□□□ -0.71
NUP54-215ENST00000514313 A0A0A0MRY4 1105 aa10.63□□□□□ -0.71
NUP54-215ENST00000514313 KIAA1211LQ6NV74 962 aa10.63□□□□□ -0.71
NUP54-215ENST00000514313 FBXO11Q86XK2 927 aa10.63□□□□□ -0.71
NUP54-215ENST00000514313 MCATQ8IVS2 390 aaKnown RBP10.63□□□□□ -0.71
NUP54-215ENST00000514313 SLFN12Q8IYM2 578 aa10.63□□□□□ -0.71
NUP54-215ENST00000514313 FMR1NBQ8N0W7 255 aaPredicted RBP10.63□□□□□ -0.71
NUP54-215ENST00000514313 WHAMMQ8TF30 809 aa10.63□□□□□ -0.71
NUP54-215ENST00000514313 DISC1Q9NRI5 854 aa10.63□□□□□ -0.71
NUP54-215ENST00000514313 AP4E1Q9UPM8 1137 aa10.63□□□□□ -0.71
NUP54-215ENST00000514313 SUSD5O60279 629 aa10.62□□□□□ -0.71
NUP54-215ENST00000514313 YARSP54577 528 aaKnown RBP10.62□□□□□ -0.71
NUP54-215ENST00000514313 LCE2CQ5TA81 110 aa10.62□□□□□ -0.71
NUP54-215ENST00000514313 FILIP1Q7Z7B0 1213 aa10.62□□□□□ -0.71
NUP54-215ENST00000514313 KIAA0907Q7Z7F0 614 aaPredicted RBP10.62□□□□□ -0.71
NUP54-215ENST00000514313 MRPL41Q8IXM3 137 aaKnown RBP10.62□□□□□ -0.71
NUP54-215ENST00000514313 RNF214Q8ND24 703 aa10.62□□□□□ -0.71
NUP54-215ENST00000514313 ZNF669Q96BR6 464 aaPredicted RBP10.62□□□□□ -0.71
NUP54-215ENST00000514313 DPH2Q9BQC3 489 aaPredicted RBP10.62□□□□□ -0.71
NUP54-215ENST00000514313 NEFMP07197 916 aa10.61□□□□□ -0.71
NUP54-215ENST00000514313 ADH5P11766 374 aa10.61□□□□□ -0.71
NUP54-215ENST00000514313 NKG7Q16617 165 aa10.61□□□□□ -0.71
NUP54-215ENST00000514313 SLC10A6Q3KNW5 377 aa10.61□□□□□ -0.71
NUP54-215ENST00000514313 KIAA1211Q6ZU35 1233 aa10.61□□□□□ -0.71
NUP54-215ENST00000514313 ACAD11Q709F0 780 aa10.61□□□□□ -0.71
NUP54-215ENST00000514313 UBE3DQ7Z6J8 389 aa10.61□□□□□ -0.71
NUP54-215ENST00000514313 HID1Q8IV36 788 aa10.61□□□□□ -0.71
NUP54-215ENST00000514313 PHACTR4Q8IZ21 702 aa10.61□□□□□ -0.71
NUP54-215ENST00000514313 TRIM11Q96F44 468 aa10.61□□□□□ -0.71
NUP54-215ENST00000514313 ZNF214Q9UL59 606 aaPredicted RBP10.61□□□□□ -0.71
NUP54-215ENST00000514313 SLC7A5Q01650 507 aa10.6□□□□□ -0.71
NUP54-215ENST00000514313 TTLL4Q14679 1199 aa10.6□□□□□ -0.71
NUP54-215ENST00000514313 TKFCQ3LXA3 575 aa10.6□□□□□ -0.71
NUP54-215ENST00000514313 GNPTABQ3T906 1256 aa10.6□□□□□ -0.71
NUP54-215ENST00000514313 SLC6A19Q695T7 634 aa10.6□□□□□ -0.71
NUP54-215ENST00000514313 ZNF507Q8TCN5 953 aa10.6□□□□□ -0.71
NUP54-215ENST00000514313 SLKQ9H2G2 1235 aaPredicted RBP10.6□□□□□ -0.71
NUP54-215ENST00000514313 ATXN3LQ9H3M9 355 aa10.6□□□□□ -0.71
NUP54-215ENST00000514313 RRAGCQ9HB90 399 aa10.6□□□□□ -0.71
NUP54-215ENST00000514313 IFT57Q9NWB7 429 aa10.6□□□□□ -0.71
NUP54-215ENST00000514313 MEGF11A6BM72 1044 aa10.59□□□□□ -0.71
NUP54-215ENST00000514313 HCLS1P14317 486 aaPredicted RBP10.59□□□□□ -0.71
NUP54-215ENST00000514313 RAC1P63000 192 aa10.59□□□□□ -0.71
NUP54-215ENST00000514313 C16orf86Q6ZW13 317 aa10.59□□□□□ -0.71
NUP54-215ENST00000514313 PPFIBP1Q86W92 1011 aa10.59□□□□□ -0.71
NUP54-215ENST00000514313 SLC6A18Q96N87 628 aa10.59□□□□□ -0.71
NUP54-215ENST00000514313 KIF2CQ99661 725 aa10.59□□□□□ -0.71
NUP54-215ENST00000514313 RNF208Q9H0X6 261 aa10.59□□□□□ -0.71
NUP54-215ENST00000514313 UBOX5O94941 541 aa10.58□□□□□ -0.72
NUP54-215ENST00000514313 GMPRP36959 345 aa10.58□□□□□ -0.72
NUP54-215ENST00000514313 CCNFP41002 786 aa10.58□□□□□ -0.72
NUP54-215ENST00000514313 NUTM2GQ5VZR2 741 aa10.58□□□□□ -0.72
NUP54-215ENST00000514313 TMEM192Q8IY95 271 aa10.58□□□□□ -0.72
NUP54-215ENST00000514313 FEZ1Q99689 392 aa10.58□□□□□ -0.72
NUP54-215ENST00000514313 SUGCTQ9HAC7 445 aa10.58□□□□□ -0.72
NUP54-215ENST00000514313 PRKAB1Q9Y478 270 aa10.58□□□□□ -0.72
NUP54-215ENST00000514313 hCG_2014768A0A024R1R8 64 aa10.57□□□□□ -0.72
NUP54-215ENST00000514313 RGS13O14921 159 aa10.57□□□□□ -0.72
NUP54-215ENST00000514313 DNAJC6O75061 913 aa10.57□□□□□ -0.72
NUP54-215ENST00000514313 FAM153BP0C7A2 387 aa10.57□□□□□ -0.72
NUP54-215ENST00000514313 SLBPQ14493 270 aaKnown RBP eCLIP10.57□□□□□ -0.72
NUP54-215ENST00000514313 TDRD10Q5VZ19 366 aaKnown RBP10.57□□□□□ -0.72
NUP54-215ENST00000514313 SMG8Q8ND04 991 aaKnown RBP10.57□□□□□ -0.72
NUP54-215ENST00000514313 ISL2Q96A47 359 aa10.57□□□□□ -0.72
NUP54-215ENST00000514313 SPATA9Q9BWV2 254 aa10.57□□□□□ -0.72
NUP54-215ENST00000514313 SPC25Q9HBM1 224 aa10.57□□□□□ -0.72
NUP54-215ENST00000514313 CYP4F12Q9HCS2 524 aa10.57□□□□□ -0.72
NUP54-215ENST00000514313 FAM86C1Q9NVL1 165 aa10.57□□□□□ -0.72
NUP54-215ENST00000514313 DRD2P14416 443 aa10.56□□□□□ -0.72
NUP54-215ENST00000514313 PMS1P54277 932 aaKnown RBP10.56□□□□□ -0.72
NUP54-215ENST00000514313 GYS2P54840 703 aa10.56□□□□□ -0.72
NUP54-215ENST00000514313 SOX4Q06945 474 aaPredicted RBP10.56□□□□□ -0.72
NUP54-215ENST00000514313 PRAMEF13Q5VWM6 474 aa10.56□□□□□ -0.72
NUP54-215ENST00000514313 ZC3HAV1Q7Z2W4 902 aaKnown RBP10.56□□□□□ -0.72
NUP54-215ENST00000514313 EPN3Q9H201 632 aa10.56□□□□□ -0.72
NUP54-215ENST00000514313 COL4A3BPQ9Y5P4 624 aa10.56□□□□□ -0.72
NUP54-215ENST00000514313 FAM229AH3BQW9 127 aa10.55□□□□□ -0.72
NUP54-215ENST00000514313 ADCY3O60266 1144 aa10.55□□□□□ -0.72
NUP54-215ENST00000514313 TIAF1O95411 115 aa10.55□□□□□ -0.72
NUP54-215ENST00000514313 ASMTLO95671 621 aa10.55□□□□□ -0.72
NUP54-215ENST00000514313 CDC37L1Q7L3B6 337 aa10.55□□□□□ -0.72
NUP54-215ENST00000514313 DYMQ7RTS9 669 aa10.55□□□□□ -0.72
NUP54-215ENST00000514313 KCT2Q8NC54 265 aa10.55□□□□□ -0.72
NUP54-215ENST00000514313 ZSWIM2Q8NEG5 633 aa10.55□□□□□ -0.72
NUP54-215ENST00000514313 NEDD1Q8NHV4 660 aa10.55□□□□□ -0.72
NUP54-215ENST00000514313 BAHD1Q8TBE0 780 aaPredicted RBP10.55□□□□□ -0.72
NUP54-215ENST00000514313 CCDC74BQ96LY2 380 aa10.55□□□□□ -0.72
NUP54-215ENST00000514313 BRINP2Q9C0B6 783 aa10.55□□□□□ -0.72
NUP54-215ENST00000514313 GSX1Q9H4S2 264 aaPredicted RBP10.55□□□□□ -0.72
NUP54-215ENST00000514313 SUCOQ9UBS9 1254 aaKnown RBP10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms