RNA–Protein interactions for RNA: ENST00000491659.5

USP39-217, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 648 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-217ENST00000491659 SDR42E1Q8WUS8 393 aa18.2■□□□□ 0.5
USP39-217ENST00000491659 WDR18Q9BV38 432 aa18.2■□□□□ 0.5
USP39-217ENST00000491659 MCM9Q9NXL9 1143 aa18.2■□□□□ 0.5
USP39-217ENST00000491659 ERC2O15083 957 aa18.19■□□□□ 0.5
USP39-217ENST00000491659 GNRH1P01148 92 aa18.19■□□□□ 0.5
USP39-217ENST00000491659 CAP1Q01518 475 aa18.19■□□□□ 0.5
USP39-217ENST00000491659 TATDN1Q6P1N9 297 aa18.19■□□□□ 0.5
USP39-217ENST00000491659 GCC1Q96CN9 775 aa18.19■□□□□ 0.5
USP39-217ENST00000491659 DCP1AQ9NPI6 582 aaPredicted RBP18.19■□□□□ 0.5
USP39-217ENST00000491659 PLCD1P51178 756 aa18.18■□□□□ 0.5
USP39-217ENST00000491659 MTMR2Q13614 643 aa18.18■□□□□ 0.5
USP39-217ENST00000491659 SLFNL1Q499Z3 407 aa18.18■□□□□ 0.5
USP39-217ENST00000491659 CERKLQ49MI3 558 aaPredicted RBP18.18■□□□□ 0.5
USP39-217ENST00000491659 SH3D19Q5HYK7 790 aa18.18■□□□□ 0.5
USP39-217ENST00000491659 TREML2Q5T2D2 321 aa18.18■□□□□ 0.5
USP39-217ENST00000491659 AMOTL1Q8IY63 956 aa18.18■□□□□ 0.5
USP39-217ENST00000491659 KBTBD3Q8NAB2 608 aa18.18■□□□□ 0.5
USP39-217ENST00000491659 DDRGK1Q96HY6 314 aa18.18■□□□□ 0.5
USP39-217ENST00000491659 ARHGAP39Q9C0H5 1083 aa18.18■□□□□ 0.5
USP39-217ENST00000491659 ATP8A2Q9NTI2 1148 aa18.18■□□□□ 0.5
USP39-217ENST00000491659 TMOD4Q9NZQ9 345 aa18.18■□□□□ 0.5
USP39-217ENST00000491659 RBBP6Q7Z6E9 1792 aaKnown RBP18.17■□□□□ 0.5
USP39-217ENST00000491659 GH2P01242 217 aa18.17■□□□□ 0.5
USP39-217ENST00000491659 BCRP11274 1271 aa18.17■□□□□ 0.5
USP39-217ENST00000491659 MX1P20591 662 aa18.17■□□□□ 0.5
USP39-217ENST00000491659 RGS19P49795 217 aa18.17■□□□□ 0.5
USP39-217ENST00000491659 BACE1P56817 501 aa18.17■□□□□ 0.5
USP39-217ENST00000491659 JAG1P78504 1218 aa18.17■□□□□ 0.5
USP39-217ENST00000491659 HDAC1Q13547 482 aaPredicted RBP18.17■□□□□ 0.5
USP39-217ENST00000491659 SHROOM1Q2M3G4 852 aaPredicted RBP18.17■□□□□ 0.5
USP39-217ENST00000491659 LRRFIP1Q32MZ4 808 aaKnown RBP18.17■□□□□ 0.5
USP39-217ENST00000491659 CABP5Q9NP86 173 aa18.17■□□□□ 0.5
USP39-217ENST00000491659 C19orf81C9J6K1 198 aa18.16■□□□□ 0.5
USP39-217ENST00000491659 USP17L10C9JJH3 530 aa18.16■□□□□ 0.5
USP39-217ENST00000491659 GLRX3O76003 335 aaKnown RBP18.16■□□□□ 0.5
USP39-217ENST00000491659 ECM2O94769 699 aaPredicted RBP18.16■□□□□ 0.5
USP39-217ENST00000491659 CHGBP05060 677 aa18.16■□□□□ 0.5
USP39-217ENST00000491659 ZFYP08048 801 aaPredicted RBP18.16■□□□□ 0.5
USP39-217ENST00000491659 OSBPP22059 807 aa18.16■□□□□ 0.5
USP39-217ENST00000491659 SHMT1P34896 483 aa18.16■□□□□ 0.5
USP39-217ENST00000491659 PSMC4P43686 418 aa18.16■□□□□ 0.5
USP39-217ENST00000491659 PRMT2P55345 433 aa18.16■□□□□ 0.5
USP39-217ENST00000491659 MLLT1Q03111 559 aaPredicted RBP18.16■□□□□ 0.5
USP39-217ENST00000491659 ABCB5Q2M3G0 1257 aa18.16■□□□□ 0.5
USP39-217ENST00000491659 ANKRD45Q5TZF3 282 aa18.16■□□□□ 0.5
USP39-217ENST00000491659 PTCH2Q9Y6C5 1203 aa18.16■□□□□ 0.5
USP39-217ENST00000491659 SLC4A4Q9Y6R1 1079 aa18.16■□□□□ 0.5
USP39-217ENST00000491659 PRKAB2O43741 272 aa18.15■□□□□ 0.5
USP39-217ENST00000491659 FMNL1O95466 1100 aaPredicted RBP18.15■□□□□ 0.5
USP39-217ENST00000491659 HOXD10P28358 340 aa18.15■□□□□ 0.5
USP39-217ENST00000491659 FCGRTP55899 365 aa18.15■□□□□ 0.5
USP39-217ENST00000491659 RAB3GAP1Q15042 981 aa18.15■□□□□ 0.5
USP39-217ENST00000491659 OTUD7AQ8TE49 926 aaPredicted RBP18.15■□□□□ 0.5
USP39-217ENST00000491659 APPBP2Q92624 585 aa18.15■□□□□ 0.5
USP39-217ENST00000491659 FEZ1Q99689 392 aa18.15■□□□□ 0.5
USP39-217ENST00000491659 PUS7LQ9H0K6 701 aaKnown RBP18.15■□□□□ 0.5
USP39-217ENST00000491659 SWAP70Q9UH65 585 aa18.15■□□□□ 0.5
USP39-217ENST00000491659 TAOK2Q9UL54 1235 aa18.15■□□□□ 0.5
USP39-217ENST00000491659 RNF113AO15541 343 aaKnown RBP18.14■□□□□ 0.49
USP39-217ENST00000491659 CYP2D6P10635 497 aa18.14■□□□□ 0.49
USP39-217ENST00000491659 IRX3P78415 501 aaPredicted RBP18.14■□□□□ 0.49
USP39-217ENST00000491659 GABPAQ06546 454 aa18.14■□□□□ 0.49
USP39-217ENST00000491659 SLC9C1Q4G0N8 1177 aa18.14■□□□□ 0.49
USP39-217ENST00000491659 PI4K2BQ8TCG2 481 aa18.14■□□□□ 0.49
USP39-217ENST00000491659 ARMC5Q96C12 935 aa18.14■□□□□ 0.49
USP39-217ENST00000491659 TRIM47Q96LD4 638 aa18.14■□□□□ 0.49
USP39-217ENST00000491659 MPHOSPH10O00566 681 aaKnown RBP18.13■□□□□ 0.49
USP39-217ENST00000491659 GCLCP48506 637 aaPredicted RBP18.13■□□□□ 0.49
USP39-217ENST00000491659 USP17L2Q6R6M4 530 aa18.13■□□□□ 0.49
USP39-217ENST00000491659 NBPF11Q86T75 865 aa18.13■□□□□ 0.49
USP39-217ENST00000491659 ANKRD13CQ8N6S4 541 aa18.13■□□□□ 0.49
USP39-217ENST00000491659 FSD1Q9BTV5 496 aa18.13■□□□□ 0.49
USP39-217ENST00000491659 ASCC2Q9H1I8 757 aaPredicted RBP18.13■□□□□ 0.49
USP39-217ENST00000491659 RWDD1Q9H446 243 aaPredicted RBP18.13■□□□□ 0.49
USP39-217ENST00000491659 SRRDQ9UH36 339 aa18.13■□□□□ 0.49
USP39-217ENST00000491659 MYPNQ86TC9 1320 aa18.13■□□□□ 0.49
USP39-217ENST00000491659 CTGFP29279 349 aa18.12■□□□□ 0.49
USP39-217ENST00000491659 EVX2Q03828 476 aa18.12■□□□□ 0.49
USP39-217ENST00000491659 FAM110CQ1W6H9 321 aa18.12■□□□□ 0.49
USP39-217ENST00000491659 EXOC6Q8TAG9 804 aa18.12■□□□□ 0.49
USP39-217ENST00000491659 ARPP21Q9UBL0 812 aaPredicted RBP18.12■□□□□ 0.49
USP39-217ENST00000491659 SALL3Q9BXA9 1300 aa18.12■□□□□ 0.49
USP39-217ENST00000491659 USP17L12C9JPN9 530 aa18.11■□□□□ 0.49
USP39-217ENST00000491659 USP17L21D6R901 530 aa18.11■□□□□ 0.49
USP39-217ENST00000491659 USP14P54578 494 aa18.11■□□□□ 0.49
USP39-217ENST00000491659 C12orf60Q5U649 245 aa18.11■□□□□ 0.49
USP39-217ENST00000491659 SLC44A5Q8NCS7 719 aa18.11■□□□□ 0.49
USP39-217ENST00000491659 RAET1EQ8TD07 263 aa18.11■□□□□ 0.49
USP39-217ENST00000491659 STRBPQ96SI9 672 aaKnown RBP18.11■□□□□ 0.49
USP39-217ENST00000491659 TNPO2O14787 897 aaKnown RBP18.1■□□□□ 0.49
USP39-217ENST00000491659 GNAT2P19087 354 aa18.1■□□□□ 0.49
USP39-217ENST00000491659 HOXA7P31268 230 aaPredicted RBP18.1■□□□□ 0.49
USP39-217ENST00000491659 ZYXQ15942 572 aaKnown RBP18.1■□□□□ 0.49
USP39-217ENST00000491659 OSBP2Q969R2 916 aa18.1■□□□□ 0.49
USP39-217ENST00000491659 DYNLL2Q96FJ2 89 aa18.1■□□□□ 0.49
USP39-217ENST00000491659 ZNF333Q96JL9 665 aa18.1■□□□□ 0.49
USP39-217ENST00000491659 C12orf42Q96LP6 360 aa18.1■□□□□ 0.49
USP39-217ENST00000491659 EMILIN3Q9NT22 766 aa18.1■□□□□ 0.49
USP39-217ENST00000491659 SUPT16HQ9Y5B9 1047 aaKnown RBP18.1■□□□□ 0.49
USP39-217ENST00000491659 HTTP42858 3142 aa18.09■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 78 ms