RNA–Protein interactions for RNA: ENST00000489728.1

CPSF7-212, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

TSL 4

Gene CPSF7, Length 488 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-212ENST00000489728 ZIC5Q96T25 663 aa13.24□□□□□ -0.29
CPSF7-212ENST00000489728 SEC62Q99442 399 aaKnown RBP13.24□□□□□ -0.29
CPSF7-212ENST00000489728 AS3MTQ9HBK9 375 aa13.24□□□□□ -0.29
CPSF7-212ENST00000489728 EPB41L4AQ9HCS5 686 aaPredicted RBP13.24□□□□□ -0.29
CPSF7-212ENST00000489728 MYH8P13535 1937 aa13.23□□□□□ -0.29
CPSF7-212ENST00000489728 USP17L5A8MUK1 530 aa13.23□□□□□ -0.29
CPSF7-212ENST00000489728 IRF6O14896 467 aa13.23□□□□□ -0.29
CPSF7-212ENST00000489728 APPP05067 770 aa13.23□□□□□ -0.29
CPSF7-212ENST00000489728 SHMT1P34896 483 aa13.23□□□□□ -0.29
CPSF7-212ENST00000489728 CERKLQ49MI3 558 aaPredicted RBP13.23□□□□□ -0.29
CPSF7-212ENST00000489728 CCDC17Q96LX7 622 aa13.23□□□□□ -0.29
CPSF7-212ENST00000489728 WDR18Q9BV38 432 aa13.23□□□□□ -0.29
CPSF7-212ENST00000489728 NAPBQ9H115 298 aa13.23□□□□□ -0.29
CPSF7-212ENST00000489728 ZBTB21Q9ULJ3 1066 aa13.23□□□□□ -0.29
CPSF7-212ENST00000489728 AFG3L2Q9Y4W6 797 aa13.23□□□□□ -0.29
CPSF7-212ENST00000489728 PTPRFP10586 1907 aa13.22□□□□□ -0.29
CPSF7-212ENST00000489728 FOXP2O15409 715 aa13.22□□□□□ -0.29
CPSF7-212ENST00000489728 SLC3A2P08195 630 aaKnown RBP13.22□□□□□ -0.29
CPSF7-212ENST00000489728 NT5C2P49902 561 aa13.22□□□□□ -0.29
CPSF7-212ENST00000489728 MKRN3Q13064 507 aaKnown RBP13.22□□□□□ -0.29
CPSF7-212ENST00000489728 SLC4A8Q2Y0W8 1093 aa13.22□□□□□ -0.29
CPSF7-212ENST00000489728 NOM1Q5C9Z4 860 aaKnown RBP13.22□□□□□ -0.29
CPSF7-212ENST00000489728 FASTKD5Q7L8L6 764 aaKnown RBP13.22□□□□□ -0.29
CPSF7-212ENST00000489728 IFNL1Q8IU54 200 aa13.22□□□□□ -0.29
CPSF7-212ENST00000489728 CNKSR2Q8WXI2 1034 aa13.22□□□□□ -0.29
CPSF7-212ENST00000489728 CABP5Q9NP86 173 aa13.22□□□□□ -0.29
CPSF7-212ENST00000489728 ZHX2Q9Y6X8 837 aa13.22□□□□□ -0.29
CPSF7-212ENST00000489728 LOC285556D6RIA3 1793 aa13.22□□□□□ -0.29
CPSF7-212ENST00000489728 CCL15-CCL14A0A0B4J2E2 113 aa13.21□□□□□ -0.29
CPSF7-212ENST00000489728 A0A0G2JLL6 359 aaPredicted RBP13.21□□□□□ -0.29
CPSF7-212ENST00000489728 SLURP2P0DP57 97 aa13.21□□□□□ -0.29
CPSF7-212ENST00000489728 CYP2D6P10635 497 aa13.21□□□□□ -0.29
CPSF7-212ENST00000489728 HSPD1P10809 573 aaKnown RBP13.21□□□□□ -0.29
CPSF7-212ENST00000489728 CHMLP26374 656 aa13.21□□□□□ -0.29
CPSF7-212ENST00000489728 CTCFP49711 727 aaPredicted RBP13.21□□□□□ -0.29
CPSF7-212ENST00000489728 RRP1BQ14684 758 aaKnown RBP13.21□□□□□ -0.29
CPSF7-212ENST00000489728 CCL15Q16663 113 aa13.21□□□□□ -0.29
CPSF7-212ENST00000489728 ABCB5Q2M3G0 1257 aa13.21□□□□□ -0.29
CPSF7-212ENST00000489728 CWC27Q6UX04 472 aaKnown RBP13.21□□□□□ -0.29
CPSF7-212ENST00000489728 CCDC129Q6ZRS4 1044 aa13.21□□□□□ -0.29
CPSF7-212ENST00000489728 TMEM179Q6ZVK1 233 aa13.21□□□□□ -0.29
CPSF7-212ENST00000489728 PRRT2Q7Z6L0 340 aaPredicted RBP13.21□□□□□ -0.29
CPSF7-212ENST00000489728 ZNF589Q86UQ0 364 aaPredicted RBP13.21□□□□□ -0.29
CPSF7-212ENST00000489728 ZNF280CQ8ND82 737 aa13.21□□□□□ -0.29
CPSF7-212ENST00000489728 BRI3BPQ8WY22 251 aa13.21□□□□□ -0.29
CPSF7-212ENST00000489728 DSCC1Q9BVC3 393 aa13.21□□□□□ -0.29
CPSF7-212ENST00000489728 ANAPC4Q9UJX5 808 aa13.21□□□□□ -0.29
CPSF7-212ENST00000489728 SLC45A1Q9Y2W3 748 aa13.21□□□□□ -0.29
CPSF7-212ENST00000489728 GH2P01242 217 aa13.2□□□□□ -0.3
CPSF7-212ENST00000489728 PCP11498 1178 aaKnown RBP13.2□□□□□ -0.3
CPSF7-212ENST00000489728 CDK8P49336 464 aa13.2□□□□□ -0.3
CPSF7-212ENST00000489728 PPARAQ07869 468 aa13.2□□□□□ -0.3
CPSF7-212ENST00000489728 SH3D19Q5HYK7 790 aa13.2□□□□□ -0.3
CPSF7-212ENST00000489728 ANKRD23Q86SG2 305 aa13.2□□□□□ -0.3
CPSF7-212ENST00000489728 PROCA1Q8NCQ7 364 aaPredicted RBP13.2□□□□□ -0.3
CPSF7-212ENST00000489728 RNF186Q9NXI6 227 aa13.2□□□□□ -0.3
CPSF7-212ENST00000489728 LAMA4Q16363 1823 aa13.2□□□□□ -0.3
CPSF7-212ENST00000489728 GREB1LQ9C091 1923 aaPredicted RBP13.19□□□□□ -0.3
CPSF7-212ENST00000489728 CYP2D7A0A087X1C5 515 aa13.19□□□□□ -0.3
CPSF7-212ENST00000489728 MINDY4BA8MYZ0 360 aa13.19□□□□□ -0.3
CPSF7-212ENST00000489728 C19orf81C9J6K1 198 aa13.19□□□□□ -0.3
CPSF7-212ENST00000489728 IGF2BP3O00425 579 aaKnown RBP eCLIP13.19□□□□□ -0.3
CPSF7-212ENST00000489728 FOXN1O15353 648 aa13.19□□□□□ -0.3
CPSF7-212ENST00000489728 GDF11O95390 407 aa13.19□□□□□ -0.3
CPSF7-212ENST00000489728 PDE4BQ07343 736 aa13.19□□□□□ -0.3
CPSF7-212ENST00000489728 VPS53Q5VIR6 699 aa13.19□□□□□ -0.3
CPSF7-212ENST00000489728 DYNLL2Q96FJ2 89 aa13.19□□□□□ -0.3
CPSF7-212ENST00000489728 PRDM10Q9NQV6 1147 aa13.19□□□□□ -0.3
CPSF7-212ENST00000489728 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.19□□□□□ -0.3
CPSF7-212ENST00000489728 PLIN4Q96Q06 1357 aa13.19□□□□□ -0.3
CPSF7-212ENST00000489728 USP17L10C9JJH3 530 aa13.18□□□□□ -0.3
CPSF7-212ENST00000489728 FGAP02671 866 aa13.18□□□□□ -0.3
CPSF7-212ENST00000489728 HSPA8P11142 646 aaKnown RBP13.18□□□□□ -0.3
CPSF7-212ENST00000489728 USP14P54578 494 aa13.18□□□□□ -0.3
CPSF7-212ENST00000489728 BACE1P56817 501 aa13.18□□□□□ -0.3
CPSF7-212ENST00000489728 JAG1P78504 1218 aa13.18□□□□□ -0.3
CPSF7-212ENST00000489728 EVX2Q03828 476 aa13.18□□□□□ -0.3
CPSF7-212ENST00000489728 SPP2Q13103 211 aa13.18□□□□□ -0.3
CPSF7-212ENST00000489728 MOGSQ13724 837 aa13.18□□□□□ -0.3
CPSF7-212ENST00000489728 SLC44A5Q8NCS7 719 aa13.18□□□□□ -0.3
CPSF7-212ENST00000489728 PTPN18Q99952 460 aa13.18□□□□□ -0.3
CPSF7-212ENST00000489728 KIAA1683Q9H0B3 1180 aa13.18□□□□□ -0.3
CPSF7-212ENST00000489728 SH2D4AQ9H788 454 aa13.18□□□□□ -0.3
CPSF7-212ENST00000489728 MKNK2Q9HBH9 465 aa13.18□□□□□ -0.3
CPSF7-212ENST00000489728 CTNNA3Q9UI47 895 aa13.18□□□□□ -0.3
CPSF7-212ENST00000489728 TRIM75PA6NK02 468 aa13.17□□□□□ -0.3
CPSF7-212ENST00000489728 BTBD19C9JJ37 291 aa13.17□□□□□ -0.3
CPSF7-212ENST00000489728 SGSM2O43147 1006 aa13.17□□□□□ -0.3
CPSF7-212ENST00000489728 TRPA1O75762 1119 aa13.17□□□□□ -0.3
CPSF7-212ENST00000489728 FGRP09769 529 aa13.17□□□□□ -0.3
CPSF7-212ENST00000489728 RASA1P20936 1047 aa13.17□□□□□ -0.3
CPSF7-212ENST00000489728 PABPC4Q13310 644 aaKnown RBP eCLIP13.17□□□□□ -0.3
CPSF7-212ENST00000489728 PPP4R3BQ5MIZ7 849 aa13.17□□□□□ -0.3
CPSF7-212ENST00000489728 CASC1Q6TDU7 716 aa13.17□□□□□ -0.3
CPSF7-212ENST00000489728 C12orf42Q96LP6 360 aa13.17□□□□□ -0.3
CPSF7-212ENST00000489728 KANSL2Q9H9L4 492 aa13.17□□□□□ -0.3
CPSF7-212ENST00000489728 SYNPO2Q9UMS6 1093 aa13.17□□□□□ -0.3
CPSF7-212ENST00000489728 AGTPBP1Q9UPW5 1226 aa13.17□□□□□ -0.3
CPSF7-212ENST00000489728 MPHOSPH10O00566 681 aaKnown RBP13.16□□□□□ -0.3
CPSF7-212ENST00000489728 ORC4O43929 436 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 117 ms