RNA–Protein interactions for RNA: ENST00000474047.5

VAMP4-203, Transcript of vesicle associated membrane protein 4, humanhuman

TSL 1 (best)

Gene VAMP4, Length 1,738 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-203ENST00000474047 CABP5Q9NP86 173 aa17.07■□□□□ 0.32
VAMP4-203ENST00000474047 A0A0G2JLL6 359 aaPredicted RBP17.06■□□□□ 0.32
VAMP4-203ENST00000474047 PRRT2Q7Z6L0 340 aaPredicted RBP17.06■□□□□ 0.32
VAMP4-203ENST00000474047 STRBPQ96SI9 672 aaKnown RBP17.06■□□□□ 0.32
VAMP4-203ENST00000474047 SIPA1L1O43166 1804 aa17.06■□□□□ 0.32
VAMP4-203ENST00000474047 GPAA1O43292 621 aa17.05■□□□□ 0.32
VAMP4-203ENST00000474047 CYP2D6P10635 497 aa17.05■□□□□ 0.32
VAMP4-203ENST00000474047 GNAT2P19087 354 aa17.05■□□□□ 0.32
VAMP4-203ENST00000474047 TATDN1Q6P1N9 297 aa17.05■□□□□ 0.32
VAMP4-203ENST00000474047 CTU1Q7Z7A3 348 aaKnown RBP17.05■□□□□ 0.32
VAMP4-203ENST00000474047 RILPL2Q969X0 211 aa17.05■□□□□ 0.32
VAMP4-203ENST00000474047 ZBTB21Q9ULJ3 1066 aa17.05■□□□□ 0.32
VAMP4-203ENST00000474047 ATAD5Q96QE3 1844 aa17.05■□□□□ 0.32
VAMP4-203ENST00000474047 USP17L12C9JPN9 530 aa17.04■□□□□ 0.32
VAMP4-203ENST00000474047 USP17L21D6R901 530 aa17.04■□□□□ 0.32
VAMP4-203ENST00000474047 MPHOSPH10O00566 681 aaKnown RBP17.04■□□□□ 0.32
VAMP4-203ENST00000474047 GH2P01242 217 aa17.04■□□□□ 0.32
VAMP4-203ENST00000474047 SP3Q02447 781 aa17.04■□□□□ 0.32
VAMP4-203ENST00000474047 RAB3GAP1Q15042 981 aa17.04■□□□□ 0.32
VAMP4-203ENST00000474047 ABCB5Q2M3G0 1257 aa17.04■□□□□ 0.32
VAMP4-203ENST00000474047 ERO1AQ96HE7 468 aa17.04■□□□□ 0.32
VAMP4-203ENST00000474047 MCOLN1Q9GZU1 580 aa17.04■□□□□ 0.32
VAMP4-203ENST00000474047 SWAP70Q9UH65 585 aa17.04■□□□□ 0.32
VAMP4-203ENST00000474047 M0R2C6 588 aa17.04■□□□□ 0.32
VAMP4-203ENST00000474047 PLEKHM2Q8IWE5 1019 aa17.04■□□□□ 0.32
VAMP4-203ENST00000474047 PARK7Q99497 189 aaKnown RBP17.04■□□□□ 0.32
VAMP4-203ENST00000474047 TMOD4Q9NZQ9 345 aa17.04■□□□□ 0.32
VAMP4-203ENST00000474047 TLR2O60603 784 aa17.03■□□□□ 0.32
VAMP4-203ENST00000474047 TDO2P48775 406 aa17.03■□□□□ 0.32
VAMP4-203ENST00000474047 HMGCS2P54868 508 aa17.03■□□□□ 0.32
VAMP4-203ENST00000474047 KIF22Q14807 665 aa17.03■□□□□ 0.32
VAMP4-203ENST00000474047 ARHGEF6Q15052 776 aa17.03■□□□□ 0.32
VAMP4-203ENST00000474047 C12orf60Q5U649 245 aa17.03■□□□□ 0.32
VAMP4-203ENST00000474047 DYNLL2Q96FJ2 89 aa17.03■□□□□ 0.32
VAMP4-203ENST00000474047 WDR18Q9BV38 432 aa17.03■□□□□ 0.32
VAMP4-203ENST00000474047 NACAP1Q9BZK3 213 aa17.03■□□□□ 0.32
VAMP4-203ENST00000474047 ARPP21Q9UBL0 812 aaPredicted RBP17.03■□□□□ 0.32
VAMP4-203ENST00000474047 BAZ2AQ9UIF9 1905 aaKnown RBP17.03■□□□□ 0.32
VAMP4-203ENST00000474047 CYP2D7A0A087X1C5 515 aa17.02■□□□□ 0.32
VAMP4-203ENST00000474047 SHMT1P34896 483 aa17.02■□□□□ 0.32
VAMP4-203ENST00000474047 JAG1P78504 1218 aa17.02■□□□□ 0.32
VAMP4-203ENST00000474047 PABPC4Q13310 644 aaKnown RBP eCLIP17.02■□□□□ 0.32
VAMP4-203ENST00000474047 MTMR2Q13614 643 aa17.02■□□□□ 0.32
VAMP4-203ENST00000474047 MOGSQ13724 837 aa17.02■□□□□ 0.32
VAMP4-203ENST00000474047 ZMYM1Q5SVZ6 1142 aa17.02■□□□□ 0.32
VAMP4-203ENST00000474047 GPAT2Q6NUI2 795 aa17.02■□□□□ 0.32
VAMP4-203ENST00000474047 GIMAP6Q6P9H5 292 aa17.02■□□□□ 0.32
VAMP4-203ENST00000474047 CTR9Q6PD62 1173 aa17.02■□□□□ 0.32
VAMP4-203ENST00000474047 SEC62Q99442 399 aaKnown RBP17.02■□□□□ 0.32
VAMP4-203ENST00000474047 FEZ1Q99689 392 aa17.02■□□□□ 0.32
VAMP4-203ENST00000474047 TAOK2Q9UL54 1235 aa17.02■□□□□ 0.32
VAMP4-203ENST00000474047 GSG1L2A8MUP6 293 aa17.01■□□□□ 0.31
VAMP4-203ENST00000474047 MINDY4BA8MYZ0 360 aa17.01■□□□□ 0.31
VAMP4-203ENST00000474047 C19orf81C9J6K1 198 aa17.01■□□□□ 0.31
VAMP4-203ENST00000474047 USP17L10C9JJH3 530 aa17.01■□□□□ 0.31
VAMP4-203ENST00000474047 BACE1P56817 501 aa17.01■□□□□ 0.31
VAMP4-203ENST00000474047 GABPAQ06546 454 aa17.01■□□□□ 0.31
VAMP4-203ENST00000474047 PKN2Q16513 984 aaKnown RBP17.01■□□□□ 0.31
VAMP4-203ENST00000474047 SHROOM1Q2M3G4 852 aaPredicted RBP17.01■□□□□ 0.31
VAMP4-203ENST00000474047 PROCA1Q8NCQ7 364 aaPredicted RBP17.01■□□□□ 0.31
VAMP4-203ENST00000474047 CD99L2Q8TCZ2 262 aa17.01■□□□□ 0.31
VAMP4-203ENST00000474047 ABHD8Q96I13 439 aa17.01■□□□□ 0.31
VAMP4-203ENST00000474047 AGTPBP1Q9UPW5 1226 aa17.01■□□□□ 0.31
VAMP4-203ENST00000474047 PHIPQ8WWQ0 1821 aa17.01■□□□□ 0.31
VAMP4-203ENST00000474047 PATL2C9JE40 543 aaKnown RBP17.01■□□□□ 0.31
VAMP4-203ENST00000474047 CYP2C8P10632 490 aa17.01■□□□□ 0.31
VAMP4-203ENST00000474047 EVX2Q03828 476 aa17.01■□□□□ 0.31
VAMP4-203ENST00000474047 SMCR8Q8TEV9 937 aaPredicted RBP17.01■□□□□ 0.31
VAMP4-203ENST00000474047 OSBPL3Q9H4L5 887 aa17.01■□□□□ 0.31
VAMP4-203ENST00000474047 CPA4Q9UI42 421 aa17.01■□□□□ 0.31
VAMP4-203ENST00000474047 PNMA3Q9UL41 463 aa17.01■□□□□ 0.31
VAMP4-203ENST00000474047 SLC45A1Q9Y2W3 748 aa17.01■□□□□ 0.31
VAMP4-203ENST00000474047 TRIM17Q9Y577 477 aa17.01■□□□□ 0.31
VAMP4-203ENST00000474047 OSBPP22059 807 aa17■□□□□ 0.31
VAMP4-203ENST00000474047 CDK8P49336 464 aa17■□□□□ 0.31
VAMP4-203ENST00000474047 STK11IPQ8N1F8 1099 aa17■□□□□ 0.31
VAMP4-203ENST00000474047 SLC44A5Q8NCS7 719 aa17■□□□□ 0.31
VAMP4-203ENST00000474047 DDX60LQ5H9U9 1706 aaKnown RBP17■□□□□ 0.31
VAMP4-203ENST00000474047 TREML2Q5T2D2 321 aa16.99■□□□□ 0.31
VAMP4-203ENST00000474047 TICAM2Q86XR7 235 aa16.99■□□□□ 0.31
VAMP4-203ENST00000474047 CCDC17Q96LX7 622 aa16.99■□□□□ 0.31
VAMP4-203ENST00000474047 NAPBQ9H115 298 aa16.99■□□□□ 0.31
VAMP4-203ENST00000474047 EFCC1Q9HA90 598 aa16.99■□□□□ 0.31
VAMP4-203ENST00000474047 MKNK2Q9HBH9 465 aa16.99■□□□□ 0.31
VAMP4-203ENST00000474047 HELLSQ9NRZ9 838 aa16.99■□□□□ 0.31
VAMP4-203ENST00000474047 SEPT2Q15019 361 aa16.99■□□□□ 0.31
VAMP4-203ENST00000474047 ZYXQ15942 572 aaKnown RBP16.99■□□□□ 0.31
VAMP4-203ENST00000474047 SBK1Q52WX2 424 aa16.99■□□□□ 0.31
VAMP4-203ENST00000474047 SH3D19Q5HYK7 790 aa16.99■□□□□ 0.31
VAMP4-203ENST00000474047 USP17L2Q6R6M4 530 aa16.99■□□□□ 0.31
VAMP4-203ENST00000474047 CCDC129Q6ZRS4 1044 aa16.99■□□□□ 0.31
VAMP4-203ENST00000474047 C16orf86Q6ZW13 317 aa16.99■□□□□ 0.31
VAMP4-203ENST00000474047 IFNL3Q8IZI9 196 aa16.99■□□□□ 0.31
VAMP4-203ENST00000474047 PTPRFP10586 1907 aa16.98■□□□□ 0.31
VAMP4-203ENST00000474047 CCDC85CA6NKD9 419 aa16.98■□□□□ 0.31
VAMP4-203ENST00000474047 ECM2O94769 699 aaPredicted RBP16.98■□□□□ 0.31
VAMP4-203ENST00000474047 USP14P54578 494 aa16.98■□□□□ 0.31
VAMP4-203ENST00000474047 TMEM179Q6ZVK1 233 aa16.98■□□□□ 0.31
VAMP4-203ENST00000474047 ZNF287Q9HBT7 754 aa16.98■□□□□ 0.31
VAMP4-203ENST00000474047 MYH8P13535 1937 aa16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms