RNA–Protein interactions for RNA: ENST00000473373.1

CPNE1-222, Transcript of copine 1, human

TSL 2

Gene CPNE1, Length 821 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE1-222	ENST00000473373	AFG3L2	Q9Y4W6	797 aa		13.89	□□□□□ -0.19
CPNE1-222	ENST00000473373	DDX60L	Q5H9U9	1706 aa	Known RBP	13.88	□□□□□ -0.19
CPNE1-222	ENST00000473373		A0A0G2JLL6	359 aa	Predicted RBP	13.88	□□□□□ -0.19
CPNE1-222	ENST00000473373	MPHOSPH10	O00566	681 aa	Known RBP	13.88	□□□□□ -0.19
CPNE1-222	ENST00000473373	EN2	P19622	333 aa	Predicted RBP	13.88	□□□□□ -0.19
CPNE1-222	ENST00000473373	PABPC4	Q13310	644 aa	Known RBP eCLIP	13.88	□□□□□ -0.19	2e-15	■■■□□ 17.2
CPNE1-222	ENST00000473373	PRRT2	Q7Z6L0	340 aa	Predicted RBP	13.88	□□□□□ -0.19
CPNE1-222	ENST00000473373	LCORL	Q8N3X6	602 aa		13.88	□□□□□ -0.19
CPNE1-222	ENST00000473373	FEZ1	Q99689	392 aa		13.88	□□□□□ -0.19
CPNE1-222	ENST00000473373	SUPT16H	Q9Y5B9	1047 aa	Known RBP	13.88	□□□□□ -0.19
CPNE1-222	ENST00000473373	HMGCS2	P54868	508 aa		13.87	□□□□□ -0.19
CPNE1-222	ENST00000473373	AAMP	Q13685	434 aa		13.87	□□□□□ -0.19
CPNE1-222	ENST00000473373	RAB3GAP1	Q15042	981 aa		13.87	□□□□□ -0.19
CPNE1-222	ENST00000473373	CERKL	Q49MI3	558 aa	Predicted RBP	13.87	□□□□□ -0.19
CPNE1-222	ENST00000473373	RIOK1	Q9BRS2	568 aa	Known RBP	13.87	□□□□□ -0.19
CPNE1-222	ENST00000473373	FSD1	Q9BTV5	496 aa		13.87	□□□□□ -0.19
CPNE1-222	ENST00000473373	RWDD1	Q9H446	243 aa	Predicted RBP	13.87	□□□□□ -0.19
CPNE1-222	ENST00000473373	SLC4A4	Q9Y6R1	1079 aa		13.87	□□□□□ -0.19
CPNE1-222	ENST00000473373	TTC41P	Q6P2S7	1318 aa		13.87	□□□□□ -0.19
CPNE1-222	ENST00000473373	GLRX3	O76003	335 aa	Known RBP	13.86	□□□□□ -0.19
CPNE1-222	ENST00000473373	FMNL1	O95466	1100 aa	Predicted RBP	13.86	□□□□□ -0.19
CPNE1-222	ENST00000473373	CYP2C8	P10632	490 aa		13.86	□□□□□ -0.19
CPNE1-222	ENST00000473373	MX1	P20591	662 aa		13.86	□□□□□ -0.19
CPNE1-222	ENST00000473373	OSBP	P22059	807 aa		13.86	□□□□□ -0.19
CPNE1-222	ENST00000473373	IRX3	P78415	501 aa	Predicted RBP	13.86	□□□□□ -0.19
CPNE1-222	ENST00000473373	CAP1	Q01518	475 aa		13.86	□□□□□ -0.19
CPNE1-222	ENST00000473373	MTMR2	Q13614	643 aa		13.86	□□□□□ -0.19
CPNE1-222	ENST00000473373	UBE3C	Q15386	1083 aa		13.86	□□□□□ -0.19
CPNE1-222	ENST00000473373	SLFNL1	Q499Z3	407 aa		13.86	□□□□□ -0.19
CPNE1-222	ENST00000473373	ZBTB21	Q9ULJ3	1066 aa		13.86	□□□□□ -0.19
CPNE1-222	ENST00000473373	AGTPBP1	Q9UPW5	1226 aa		13.86	□□□□□ -0.19
CPNE1-222	ENST00000473373	TCRBV5S4A2T	A0A5A2	114 aa		13.85	□□□□□ -0.19
CPNE1-222	ENST00000473373	GH2	P01242	217 aa		13.85	□□□□□ -0.19
CPNE1-222	ENST00000473373	APP	P05067	770 aa		13.85	□□□□□ -0.19
CPNE1-222	ENST00000473373	HOXD10	P28358	340 aa		13.85	□□□□□ -0.19
CPNE1-222	ENST00000473373	LACTB	P83111	547 aa	Predicted RBP	13.85	□□□□□ -0.19
CPNE1-222	ENST00000473373	ZYX	Q15942	572 aa	Known RBP	13.85	□□□□□ -0.19
CPNE1-222	ENST00000473373	ABCB5	Q2M3G0	1257 aa		13.85	□□□□□ -0.19
CPNE1-222	ENST00000473373	B4GALNT3	Q6L9W6	998 aa		13.85	□□□□□ -0.19
CPNE1-222	ENST00000473373	KBTBD3	Q8NAB2	608 aa		13.85	□□□□□ -0.19
CPNE1-222	ENST00000473373	PROCA1	Q8NCQ7	364 aa	Predicted RBP	13.85	□□□□□ -0.19
CPNE1-222	ENST00000473373	EHD4	Q9H223	541 aa		13.85	□□□□□ -0.19
CPNE1-222	ENST00000473373	DNAJC18	Q9H819	358 aa		13.85	□□□□□ -0.19
CPNE1-222	ENST00000473373	ATP8A2	Q9NTI2	1148 aa		13.85	□□□□□ -0.19
CPNE1-222	ENST00000473373	GINM1	Q9NU53	330 aa		13.85	□□□□□ -0.19
CPNE1-222	ENST00000473373	USP17L10	C9JJH3	530 aa		13.84	□□□□□ -0.19
CPNE1-222	ENST00000473373	ZFY	P08048	801 aa	Predicted RBP	13.84	□□□□□ -0.19
CPNE1-222	ENST00000473373	PSMC4	P43686	418 aa		13.84	□□□□□ -0.19
CPNE1-222	ENST00000473373	PLCD1	P51178	756 aa		13.84	□□□□□ -0.19
CPNE1-222	ENST00000473373	RRP1B	Q14684	758 aa	Known RBP	13.84	□□□□□ -0.19
CPNE1-222	ENST00000473373	SLC9C1	Q4G0N8	1177 aa		13.84	□□□□□ -0.19
CPNE1-222	ENST00000473373	GPAT2	Q6NUI2	795 aa		13.84	□□□□□ -0.19
CPNE1-222	ENST00000473373	NBPF11	Q86T75	865 aa		13.84	□□□□□ -0.19
CPNE1-222	ENST00000473373	EXOC6	Q8TAG9	804 aa		13.84	□□□□□ -0.19
CPNE1-222	ENST00000473373	ARMC5	Q96C12	935 aa		13.84	□□□□□ -0.19
CPNE1-222	ENST00000473373	CWC22	Q9HCG8	908 aa	Known RBP	13.84	□□□□□ -0.19
CPNE1-222	ENST00000473373	DCP1A	Q9NPI6	582 aa	Predicted RBP	13.84	□□□□□ -0.19
CPNE1-222	ENST00000473373	TAOK2	Q9UL54	1235 aa		13.84	□□□□□ -0.19
CPNE1-222	ENST00000473373	DOCK3	Q8IZD9	2030 aa		13.83	□□□□□ -0.2
CPNE1-222	ENST00000473373	C19orf81	C9J6K1	198 aa		13.83	□□□□□ -0.2
CPNE1-222	ENST00000473373	RNF113A	O15541	343 aa	Known RBP	13.83	□□□□□ -0.2
CPNE1-222	ENST00000473373	PRKAB2	O43741	272 aa		13.83	□□□□□ -0.2
CPNE1-222	ENST00000473373	MYC	P01106	439 aa	Predicted RBP	13.83	□□□□□ -0.2
CPNE1-222	ENST00000473373	FCGRT	P55899	365 aa		13.83	□□□□□ -0.2
CPNE1-222	ENST00000473373	BACE1	P56817	501 aa		13.83	□□□□□ -0.2
CPNE1-222	ENST00000473373	HDAC1	Q13547	482 aa	Predicted RBP	13.83	□□□□□ -0.2
CPNE1-222	ENST00000473373	TREML2	Q5T2D2	321 aa		13.83	□□□□□ -0.2
CPNE1-222	ENST00000473373	CCAR1	Q8IX12	1150 aa	Known RBP	13.83	□□□□□ -0.2
CPNE1-222	ENST00000473373	RAET1E	Q8TD07	263 aa		13.83	□□□□□ -0.2
CPNE1-222	ENST00000473373	APPBP2	Q92624	585 aa		13.83	□□□□□ -0.2
CPNE1-222	ENST00000473373	TMEM106C	Q9BVX2	250 aa		13.83	□□□□□ -0.2
CPNE1-222	ENST00000473373	SWAP70	Q9UH65	585 aa		13.83	□□□□□ -0.2
CPNE1-222	ENST00000473373	SLC45A1	Q9Y2W3	748 aa		13.83	□□□□□ -0.2
CPNE1-222	ENST00000473373	MYH4	Q9Y623	1939 aa		13.83	□□□□□ -0.2
CPNE1-222	ENST00000473373	TRIM6-TRIM34	B2RNG4	842 aa		13.82	□□□□□ -0.2
CPNE1-222	ENST00000473373	GNRH1	P01148	92 aa		13.82	□□□□□ -0.2
CPNE1-222	ENST00000473373	CHGB	P05060	677 aa		13.82	□□□□□ -0.2
CPNE1-222	ENST00000473373	CYP2D6	P10635	497 aa		13.82	□□□□□ -0.2
CPNE1-222	ENST00000473373	TDO2	P48775	406 aa		13.82	□□□□□ -0.2
CPNE1-222	ENST00000473373	IRX6	P78412	446 aa	Predicted RBP	13.82	□□□□□ -0.2
CPNE1-222	ENST00000473373	MOGS	Q13724	837 aa		13.82	□□□□□ -0.2
CPNE1-222	ENST00000473373	SHROOM1	Q2M3G4	852 aa	Predicted RBP	13.82	□□□□□ -0.2
CPNE1-222	ENST00000473373	USP17L2	Q6R6M4	530 aa		13.82	□□□□□ -0.2
CPNE1-222	ENST00000473373	C17orf99	Q6UX52	265 aa		13.82	□□□□□ -0.2
CPNE1-222	ENST00000473373	STK11IP	Q8N1F8	1099 aa		13.82	□□□□□ -0.2
CPNE1-222	ENST00000473373	ANKRD13C	Q8N6S4	541 aa		13.82	□□□□□ -0.2
CPNE1-222	ENST00000473373	OTUD7A	Q8TE49	926 aa	Predicted RBP	13.82	□□□□□ -0.2
CPNE1-222	ENST00000473373	WDR18	Q9BV38	432 aa		13.82	□□□□□ -0.2
CPNE1-222	ENST00000473373	LNPK	Q9C0E8	428 aa		13.82	□□□□□ -0.2
CPNE1-222	ENST00000473373	ARHGAP39	Q9C0H5	1083 aa		13.82	□□□□□ -0.2
CPNE1-222	ENST00000473373	PUS7L	Q9H0K6	701 aa	Known RBP	13.82	□□□□□ -0.2
CPNE1-222	ENST00000473373	BIN2	Q9UBW5	565 aa	Predicted RBP	13.82	□□□□□ -0.2
CPNE1-222	ENST00000473373	HTT	P42858	3142 aa		13.81	□□□□□ -0.2
CPNE1-222	ENST00000473373	MINDY4B	A8MYZ0	360 aa		13.81	□□□□□ -0.2
CPNE1-222	ENST00000473373	USP17L12	C9JPN9	530 aa		13.81	□□□□□ -0.2
CPNE1-222	ENST00000473373	USP17L21	D6R901	530 aa		13.81	□□□□□ -0.2
CPNE1-222	ENST00000473373	RAD21	O60216	631 aa		13.81	□□□□□ -0.2
CPNE1-222	ENST00000473373	USP14	P54578	494 aa		13.81	□□□□□ -0.2
CPNE1-222	ENST00000473373	ATP2B2	Q01814	1243 aa		13.81	□□□□□ -0.2
CPNE1-222	ENST00000473373	TATDN1	Q6P1N9	297 aa		13.81	□□□□□ -0.2

Retrieved 100 of 20,778 RNA–protein pairs in 63 ms