RNA–Protein interactions for RNA: ENST00000469550.6

HDAC3-205, Transcript of histone deacetylase 3, humanhuman

TSL 1 (best)

Gene HDAC3, Length 1,952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-205ENST00000469550 Q6ZUG5 572 aa11.07□□□□□ -0.64
HDAC3-205ENST00000469550 ZNF589Q86UQ0 364 aaPredicted RBP11.07□□□□□ -0.64
HDAC3-205ENST00000469550 TICAM2Q86XR7 235 aa11.07□□□□□ -0.64
HDAC3-205ENST00000469550 ANKRD18AQ8IVF6 992 aa11.07□□□□□ -0.64
HDAC3-205ENST00000469550 PPP1R13BQ96KQ4 1090 aa11.07□□□□□ -0.64
HDAC3-205ENST00000469550 SRRTQ9BXP5 876 aaKnown RBP11.07□□□□□ -0.64
HDAC3-205ENST00000469550 GBA2Q9HCG7 927 aaPredicted RBP11.07□□□□□ -0.64
HDAC3-205ENST00000469550 ANKIB1Q9P2G1 1089 aa11.07□□□□□ -0.64
HDAC3-205ENST00000469550 NOL12Q9UGY1 213 aaKnown RBP eCLIP11.07□□□□□ -0.64
HDAC3-205ENST00000469550 MAP3K2Q9Y2U5 619 aa11.07□□□□□ -0.64
HDAC3-205ENST00000469550 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP11.07□□□□□ -0.64
HDAC3-205ENST00000469550 FHOD1Q9Y613 1164 aa11.07□□□□□ -0.64
HDAC3-205ENST00000469550 V9GYY5 206 aaPredicted RBP11.07□□□□□ -0.64
HDAC3-205ENST00000469550 PITPNM2Q9BZ72 1349 aa11.06□□□□□ -0.64
HDAC3-205ENST00000469550 IGKV5-2P06315 115 aa11.06□□□□□ -0.64
HDAC3-205ENST00000469550 TPM1P09493 284 aa11.06□□□□□ -0.64
HDAC3-205ENST00000469550 SCRN1Q12765 414 aa11.06□□□□□ -0.64
HDAC3-205ENST00000469550 PODNQ7Z5L7 613 aa11.06□□□□□ -0.64
HDAC3-205ENST00000469550 C2orf69Q8N8R5 385 aa11.06□□□□□ -0.64
HDAC3-205ENST00000469550 NSUN7Q8NE18 718 aaKnown RBP11.06□□□□□ -0.64
HDAC3-205ENST00000469550 CCDC102AQ96A19 550 aa11.06□□□□□ -0.64
HDAC3-205ENST00000469550 CDC5LQ99459 802 aaKnown RBP11.06□□□□□ -0.64
HDAC3-205ENST00000469550 TSPYL1Q9H0U9 437 aa11.06□□□□□ -0.64
HDAC3-205ENST00000469550 CCDC8Q9H0W5 538 aaPredicted RBP11.06□□□□□ -0.64
HDAC3-205ENST00000469550 BOLA2Q9H3K6 86 aa11.06□□□□□ -0.64
HDAC3-205ENST00000469550 SAGE1Q9NXZ1 904 aa11.06□□□□□ -0.64
HDAC3-205ENST00000469550 PHLPP2Q6ZVD8 1323 aa11.06□□□□□ -0.64
HDAC3-205ENST00000469550 AKAP11Q9UKA4 1901 aa11.06□□□□□ -0.64
HDAC3-205ENST00000469550 CASP8AP2Q9UKL3 1982 aa11.05□□□□□ -0.64
HDAC3-205ENST00000469550 ADM5C9JUS6 153 aa11.05□□□□□ -0.64
HDAC3-205ENST00000469550 GRM8O00222 908 aa11.05□□□□□ -0.64
HDAC3-205ENST00000469550 ZRANB2O95218 330 aaKnown RBP eCLIP11.05□□□□□ -0.64
HDAC3-205ENST00000469550 ATP5JP18859 108 aa11.05□□□□□ -0.64
HDAC3-205ENST00000469550 RGS19P49795 217 aa11.05□□□□□ -0.64
HDAC3-205ENST00000469550 IRX5P78411 483 aaPredicted RBP11.05□□□□□ -0.64
HDAC3-205ENST00000469550 ERCC6LQ2NKX8 1250 aa11.05□□□□□ -0.64
HDAC3-205ENST00000469550 FMR1NBQ8N0W7 255 aaPredicted RBP11.05□□□□□ -0.64
HDAC3-205ENST00000469550 AOPEPQ8N6M6 819 aa11.05□□□□□ -0.64
HDAC3-205ENST00000469550 TTLL11Q8NHH1 800 aa11.05□□□□□ -0.64
HDAC3-205ENST00000469550 KAZALD1Q96I82 304 aa11.05□□□□□ -0.64
HDAC3-205ENST00000469550 USP28Q96RU2 1077 aa11.05□□□□□ -0.64
HDAC3-205ENST00000469550 AGXT2Q9BYV1 514 aa11.05□□□□□ -0.64
HDAC3-205ENST00000469550 ARGLU1Q9NWB6 273 aaPredicted RBP11.05□□□□□ -0.64
HDAC3-205ENST00000469550 GGA3Q9NZ52 723 aa11.05□□□□□ -0.64
HDAC3-205ENST00000469550 A0A1B0GUL6 1792 aa11.05□□□□□ -0.64
HDAC3-205ENST00000469550 SFPQP23246 707 aaKnown RBP eCLIP11.05□□□□□ -0.64
HDAC3-205ENST00000469550 CLCN6P51797 869 aa11.05□□□□□ -0.64
HDAC3-205ENST00000469550 ETF1P62495 437 aaKnown RBP11.05□□□□□ -0.64
HDAC3-205ENST00000469550 ADALQ6DHV7 355 aa11.05□□□□□ -0.64
HDAC3-205ENST00000469550 SULF1Q8IWU6 871 aa11.05□□□□□ -0.64
HDAC3-205ENST00000469550 FSIP1Q8NA03 581 aa11.05□□□□□ -0.64
HDAC3-205ENST00000469550 MRPS27Q92552 414 aaKnown RBP11.05□□□□□ -0.64
HDAC3-205ENST00000469550 DDX11Q96FC9 970 aa11.05□□□□□ -0.64
HDAC3-205ENST00000469550 SUCLG2Q96I99 432 aa11.05□□□□□ -0.64
HDAC3-205ENST00000469550 PLA2G12BQ9BX93 195 aa11.05□□□□□ -0.64
HDAC3-205ENST00000469550 BSDC1Q9NW68 430 aaPredicted RBP11.05□□□□□ -0.64
HDAC3-205ENST00000469550 NEURL1BA8MQ27 555 aa11.04□□□□□ -0.64
HDAC3-205ENST00000469550 G3V3G9 751 aa11.04□□□□□ -0.64
HDAC3-205ENST00000469550 H7C1W4 665 aa11.04□□□□□ -0.64
HDAC3-205ENST00000469550 SLC10A3P09131 477 aa11.04□□□□□ -0.64
HDAC3-205ENST00000469550 PNMA6AP0CW24 399 aaPredicted RBP11.04□□□□□ -0.64
HDAC3-205ENST00000469550 MMP14P50281 582 aa11.04□□□□□ -0.64
HDAC3-205ENST00000469550 TPM4P67936 248 aa11.04□□□□□ -0.64
HDAC3-205ENST00000469550 FKBP1BP68106 108 aa11.04□□□□□ -0.64
HDAC3-205ENST00000469550 NEXNQ0ZGT2 675 aa11.04□□□□□ -0.64
HDAC3-205ENST00000469550 DCAF8Q5TAQ9 597 aa11.04□□□□□ -0.64
HDAC3-205ENST00000469550 ARMCX5Q6P1M9 558 aa11.04□□□□□ -0.64
HDAC3-205ENST00000469550 DLK2Q6UY11 383 aa11.04□□□□□ -0.64
HDAC3-205ENST00000469550 DHX32Q7L7V1 743 aaKnown RBP11.04□□□□□ -0.64
HDAC3-205ENST00000469550 CDCA5Q96FF9 252 aa11.04□□□□□ -0.64
HDAC3-205ENST00000469550 ZIC5Q96T25 663 aa11.04□□□□□ -0.64
HDAC3-205ENST00000469550 DNAJC2Q99543 621 aaKnown RBP11.04□□□□□ -0.64
HDAC3-205ENST00000469550 RTEL1Q9NZ71 1219 aa11.04□□□□□ -0.64
HDAC3-205ENST00000469550 KIAA1468Q9P260 1216 aa11.04□□□□□ -0.64
HDAC3-205ENST00000469550 TSKSQ9UJT2 592 aa11.04□□□□□ -0.64
HDAC3-205ENST00000469550 USP17L3A6NCW0 530 aa11.03□□□□□ -0.64
HDAC3-205ENST00000469550 USP17L4A6NCW7 530 aa11.03□□□□□ -0.64
HDAC3-205ENST00000469550 USP17L8P0C7I0 530 aa11.03□□□□□ -0.64
HDAC3-205ENST00000469550 PLA2G4AP47712 749 aa11.03□□□□□ -0.64
HDAC3-205ENST00000469550 TEX35Q5T0J7 233 aa11.03□□□□□ -0.64
HDAC3-205ENST00000469550 RBM26Q5T8P6 1007 aaKnown RBP11.03□□□□□ -0.64
HDAC3-205ENST00000469550 SYT10Q6XYQ8 523 aa11.03□□□□□ -0.64
HDAC3-205ENST00000469550 USP17L1Q7RTZ2 530 aa11.03□□□□□ -0.64
HDAC3-205ENST00000469550 REM2Q8IYK8 340 aaPredicted RBP11.03□□□□□ -0.64
HDAC3-205ENST00000469550 UBXN6Q9BZV1 441 aa11.03□□□□□ -0.64
HDAC3-205ENST00000469550 TLR7Q9NYK1 1049 aaKnown RBP11.03□□□□□ -0.64
HDAC3-205ENST00000469550 ZKSCAN7Q9P0L1 754 aaPredicted RBP11.03□□□□□ -0.64
HDAC3-205ENST00000469550 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.03□□□□□ -0.64
HDAC3-205ENST00000469550 SALL1Q9NSC2 1324 aa11.03□□□□□ -0.64
HDAC3-205ENST00000469550 ASTN2O75129 1339 aaPredicted RBP11.03□□□□□ -0.64
HDAC3-205ENST00000469550 MYO3BQ8WXR4 1341 aa11.03□□□□□ -0.64
HDAC3-205ENST00000469550 CTDNEP1O95476 244 aa11.03□□□□□ -0.64
HDAC3-205ENST00000469550 CYP21A2P08686 494 aa11.03□□□□□ -0.64
HDAC3-205ENST00000469550 ME1P48163 572 aa11.03□□□□□ -0.64
HDAC3-205ENST00000469550 MCMDC2Q4G0Z9 681 aa11.03□□□□□ -0.64
HDAC3-205ENST00000469550 ARHGAP29Q52LW3 1261 aa11.03□□□□□ -0.64
HDAC3-205ENST00000469550 TMCO3Q6UWJ1 677 aa11.03□□□□□ -0.64
HDAC3-205ENST00000469550 FCHSD1Q86WN1 690 aa11.03□□□□□ -0.64
HDAC3-205ENST00000469550 RGS22Q8NE09 1264 aa11.03□□□□□ -0.64
HDAC3-205ENST00000469550 UBXN4Q92575 508 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms