RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 ATP13A1Q9HD20 1204 aa7.48□□□□□ -1.21
CCDC88A-210ENST00000468534 RNF19AQ9NV58 838 aa7.48□□□□□ -1.21
CCDC88A-210ENST00000468534 PCDHB5Q9Y5E4 795 aa7.48□□□□□ -1.21
CCDC88A-210ENST00000468534 LRRC10BA6NIK2 292 aa7.47□□□□□ -1.21
CCDC88A-210ENST00000468534 CBX7O95931 251 aa7.47□□□□□ -1.21
CCDC88A-210ENST00000468534 GRK4P32298 578 aa7.47□□□□□ -1.21
CCDC88A-210ENST00000468534 PKN1Q16512 942 aa7.47□□□□□ -1.21
CCDC88A-210ENST00000468534 PRAMEF13Q5VWM6 474 aa7.47□□□□□ -1.21
CCDC88A-210ENST00000468534 KSR1Q8IVT5 923 aa7.47□□□□□ -1.21
CCDC88A-210ENST00000468534 MFSD4AQ8N468 514 aa7.47□□□□□ -1.21
CCDC88A-210ENST00000468534 RIN3Q8TB24 985 aa7.47□□□□□ -1.21
CCDC88A-210ENST00000468534 LETMD1Q6P1Q0 360 aa7.46□□□□□ -1.22
CCDC88A-210ENST00000468534 HID1Q8IV36 788 aa7.46□□□□□ -1.22
CCDC88A-210ENST00000468534 MFSD2AQ8NA29 543 aa7.46□□□□□ -1.22
CCDC88A-210ENST00000468534 FRMD6Q96NE9 622 aa7.46□□□□□ -1.22
CCDC88A-210ENST00000468534 DPH2Q9BQC3 489 aaPredicted RBP7.46□□□□□ -1.22
CCDC88A-210ENST00000468534 CTNND2Q9UQB3 1225 aa7.46□□□□□ -1.22
CCDC88A-210ENST00000468534 SNCAIPQ9Y6H5 919 aa7.46□□□□□ -1.22
CCDC88A-210ENST00000468534 SHROOM4Q9ULL8 1493 aa7.45□□□□□ -1.22
CCDC88A-210ENST00000468534 PRPF40AO75400 957 aaKnown RBP7.45□□□□□ -1.22
CCDC88A-210ENST00000468534 MLANAQ16655 118 aa7.45□□□□□ -1.22
CCDC88A-210ENST00000468534 SLC38A3Q99624 504 aa7.45□□□□□ -1.22
CCDC88A-210ENST00000468534 DUSP9Q99956 384 aaKnown RBP7.45□□□□□ -1.22
CCDC88A-210ENST00000468534 SEMA3GQ9NS98 782 aa7.45□□□□□ -1.22
CCDC88A-210ENST00000468534 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP7.45□□□□□ -1.22
CCDC88A-210ENST00000468534 HMGB1P09429 215 aaKnown RBP7.44□□□□□ -1.22
CCDC88A-210ENST00000468534 FYB2Q5VWT5 728 aa7.44□□□□□ -1.22
CCDC88A-210ENST00000468534 LIN37Q96GY3 246 aaPredicted RBP7.44□□□□□ -1.22
CCDC88A-210ENST00000468534 CAPN6Q9Y6Q1 641 aa7.44□□□□□ -1.22
CCDC88A-210ENST00000468534 ZNF503-AS2A6NEH8 195 aa7.43□□□□□ -1.22
CCDC88A-210ENST00000468534 ZNF865P0CJ78 1059 aaPredicted RBP7.43□□□□□ -1.22
CCDC88A-210ENST00000468534 CDK11BP21127 795 aaKnown RBP7.43□□□□□ -1.22
CCDC88A-210ENST00000468534 LIG3P49916 1009 aa7.43□□□□□ -1.22
CCDC88A-210ENST00000468534 MEI1Q5TIA1 1274 aa7.43□□□□□ -1.22
CCDC88A-210ENST00000468534 CDH24Q86UP0 819 aa7.43□□□□□ -1.22
CCDC88A-210ENST00000468534 CDK11AQ9UQ88 783 aaPredicted RBP7.43□□□□□ -1.22
CCDC88A-210ENST00000468534 AK5Q9Y6K8 562 aa7.43□□□□□ -1.22
CCDC88A-210ENST00000468534 CST3P01034 146 aaPredicted RBP7.42□□□□□ -1.22
CCDC88A-210ENST00000468534 PGRP06401 933 aa7.42□□□□□ -1.22
CCDC88A-210ENST00000468534 CAP2P40123 477 aa7.42□□□□□ -1.22
CCDC88A-210ENST00000468534 AFMP43652 599 aa7.42□□□□□ -1.22
CCDC88A-210ENST00000468534 RPS26P62854 115 aaKnown RBP7.42□□□□□ -1.22
CCDC88A-210ENST00000468534 ZNF746Q6NUN9 644 aaPredicted RBP7.42□□□□□ -1.22
CCDC88A-210ENST00000468534 NPAS4Q8IUM7 802 aa7.42□□□□□ -1.22
CCDC88A-210ENST00000468534 UBE2FQ969M7 185 aa7.42□□□□□ -1.22
CCDC88A-210ENST00000468534 MIR1-1HGQ9H1L0 117 aa7.42□□□□□ -1.22
CCDC88A-210ENST00000468534 LMCD1Q9NZU5 365 aa7.42□□□□□ -1.22
CCDC88A-210ENST00000468534 ZSWIM5Q9P217 1185 aa7.42□□□□□ -1.22
CCDC88A-210ENST00000468534 ST14Q9Y5Y6 855 aa7.42□□□□□ -1.22
CCDC88A-210ENST00000468534 ARID1BQ8NFD5 2236 aaPredicted RBP7.42□□□□□ -1.22
CCDC88A-210ENST00000468534 ANKRD33BA6NCL7 494 aa7.41□□□□□ -1.22
CCDC88A-210ENST00000468534 DBX1A6NMT0 343 aa7.41□□□□□ -1.22
CCDC88A-210ENST00000468534 EAPPQ56P03 285 aaPredicted RBP7.41□□□□□ -1.22
CCDC88A-210ENST00000468534 MPZL3Q6UWV2 235 aa7.41□□□□□ -1.22
CCDC88A-210ENST00000468534 C22orf34Q6ZV56 151 aa7.41□□□□□ -1.22
CCDC88A-210ENST00000468534 JARID2Q92833 1246 aaPredicted RBP7.41□□□□□ -1.22
CCDC88A-210ENST00000468534 KIRREL1Q96J84 757 aa7.41□□□□□ -1.22
CCDC88A-210ENST00000468534 TJP2Q9UDY2 1190 aa7.41□□□□□ -1.22
CCDC88A-210ENST00000468534 IQCJ-SCHIP1C9J366 451 aaPredicted RBP7.4□□□□□ -1.22
CCDC88A-210ENST00000468534 GFRA2O00451 464 aa7.4□□□□□ -1.22
CCDC88A-210ENST00000468534 IGSF3O75054 1194 aa7.4□□□□□ -1.22
CCDC88A-210ENST00000468534 MESP2Q0VG99 397 aa7.4□□□□□ -1.22
CCDC88A-210ENST00000468534 AGMOQ6ZNB7 445 aa7.4□□□□□ -1.22
CCDC88A-210ENST00000468534 FAM84AQ96KN4 292 aa7.4□□□□□ -1.22
CCDC88A-210ENST00000468534 TRAIPQ9BWF2 469 aa7.4□□□□□ -1.22
CCDC88A-210ENST00000468534 TLR6Q9Y2C9 796 aa7.4□□□□□ -1.22
CCDC88A-210ENST00000468534 ZBTB7CA1YPR0 619 aa7.39□□□□□ -1.23
CCDC88A-210ENST00000468534 F6X3S4 739 aa7.39□□□□□ -1.23
CCDC88A-210ENST00000468534 GLI1P08151 1106 aa7.39□□□□□ -1.23
CCDC88A-210ENST00000468534 HSP90B1P14625 803 aaKnown RBP7.39□□□□□ -1.23
CCDC88A-210ENST00000468534 TFE3P19532 575 aaPredicted RBP7.39□□□□□ -1.23
CCDC88A-210ENST00000468534 CYP7A1P22680 504 aa7.39□□□□□ -1.23
CCDC88A-210ENST00000468534 TNK2Q07912 1038 aa7.39□□□□□ -1.23
CCDC88A-210ENST00000468534 TMEM87BQ96K49 555 aa7.39□□□□□ -1.23
CCDC88A-210ENST00000468534 CHMP4AQ9BY43 222 aa7.39□□□□□ -1.23
CCDC88A-210ENST00000468534 C19orf73Q9NVV2 129 aa7.39□□□□□ -1.23
CCDC88A-210ENST00000468534 FAM53CQ9NYF3 392 aa7.39□□□□□ -1.23
CCDC88A-210ENST00000468534 SLAMF8Q9P0V8 285 aa7.39□□□□□ -1.23
CCDC88A-210ENST00000468534 PATL2C9JE40 543 aaKnown RBP7.38□□□□□ -1.23
CCDC88A-210ENST00000468534 TMEM67Q5HYA8 995 aa7.38□□□□□ -1.23
CCDC88A-210ENST00000468534 PRR23BQ6ZRT6 265 aa7.38□□□□□ -1.23
CCDC88A-210ENST00000468534 KIR3DL1P43629 444 aa7.37□□□□□ -1.23
CCDC88A-210ENST00000468534 PDE4BQ07343 736 aa7.37□□□□□ -1.23
CCDC88A-210ENST00000468534 PSMD2Q13200 908 aa7.37□□□□□ -1.23
CCDC88A-210ENST00000468534 THAP5Q7Z6K1 395 aa7.37□□□□□ -1.23
CCDC88A-210ENST00000468534 AEBP1Q8IUX7 1158 aa7.37□□□□□ -1.23
CCDC88A-210ENST00000468534 MRPL41Q8IXM3 137 aaKnown RBP7.37□□□□□ -1.23
CCDC88A-210ENST00000468534 ALPK1Q96QP1 1244 aa7.37□□□□□ -1.23
CCDC88A-210ENST00000468534 PARP2Q9UGN5 583 aa7.37□□□□□ -1.23
CCDC88A-210ENST00000468534 WASH4PA8MWX3 477 aa7.36□□□□□ -1.23
CCDC88A-210ENST00000468534 GDNFP39905 211 aa7.36□□□□□ -1.23
CCDC88A-210ENST00000468534 RPL6Q02878 288 aaKnown RBP7.36□□□□□ -1.23
CCDC88A-210ENST00000468534 TSNAXIP1Q2TAA8 658 aa7.36□□□□□ -1.23
CCDC88A-210ENST00000468534 SLC6A19Q695T7 634 aa7.36□□□□□ -1.23
CCDC88A-210ENST00000468534 FAM161BQ96MY7 647 aa7.36□□□□□ -1.23
CCDC88A-210ENST00000468534 DIRC2Q96SL1 478 aa7.36□□□□□ -1.23
CCDC88A-210ENST00000468534 CORINQ9Y5Q5 1042 aa7.36□□□□□ -1.23
CCDC88A-210ENST00000468534 DNAJC25-GNG10A0A024R161 153 aa7.35□□□□□ -1.23
CCDC88A-210ENST00000468534 ETV3P41162 512 aa7.35□□□□□ -1.23
CCDC88A-210ENST00000468534 RALGPS1Q5JS13 557 aa7.35□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 76.1 ms