RNA–Protein interactions for RNA: ENST00000445265.6

TCOF1-206, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,825 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-206ENST00000445265 NEK11Q8NG66 645 aa18.74■□□□□ 0.59
TCOF1-206ENST00000445265 GREM2Q9H772 168 aa18.74■□□□□ 0.59
TCOF1-206ENST00000445265 SPTLC3Q9NUV7 552 aa18.74■□□□□ 0.59
TCOF1-206ENST00000445265 WWC3Q9ULE0 1092 aa18.74■□□□□ 0.59
TCOF1-206ENST00000445265 GOLGA6L7A0A1B0GV03 622 aa18.73■□□□□ 0.59
TCOF1-206ENST00000445265 CETN1Q12798 172 aa18.73■□□□□ 0.59
TCOF1-206ENST00000445265 CAPZA3Q96KX2 299 aa18.73■□□□□ 0.59
TCOF1-206ENST00000445265 PLIN2Q99541 437 aa18.73■□□□□ 0.59
TCOF1-206ENST00000445265 ADD2P35612 726 aa18.73■□□□□ 0.59
TCOF1-206ENST00000445265 NUP58Q9BVL2 599 aa18.73■□□□□ 0.59
TCOF1-206ENST00000445265 EFCAB8A8MWE9 144 aa18.72■□□□□ 0.59
TCOF1-206ENST00000445265 STX10O60499 249 aa18.72■□□□□ 0.59
TCOF1-206ENST00000445265 PHKA1P46020 1223 aa18.72■□□□□ 0.59
TCOF1-206ENST00000445265 NPHP4O75161 1426 aaPredicted RBP18.72■□□□□ 0.59
TCOF1-206ENST00000445265 PPP1R13BQ96KQ4 1090 aa18.72■□□□□ 0.59
TCOF1-206ENST00000445265 TBCAO75347 108 aaKnown RBP18.72■□□□□ 0.59
TCOF1-206ENST00000445265 LETM2Q2VYF4 491 aa18.72■□□□□ 0.59
TCOF1-206ENST00000445265 TAX1BP1Q86VP1 789 aa18.72■□□□□ 0.59
TCOF1-206ENST00000445265 CSGALNACT2Q8N6G5 542 aa18.72■□□□□ 0.59
TCOF1-206ENST00000445265 NOC4LQ9BVI4 516 aaKnown RBP18.72■□□□□ 0.59
TCOF1-206ENST00000445265 EHMT1Q9H9B1 1298 aa18.72■□□□□ 0.59
TCOF1-206ENST00000445265 PDE4DQ08499 809 aa18.72■□□□□ 0.59
TCOF1-206ENST00000445265 SV2BQ7L1I2 683 aa18.72■□□□□ 0.59
TCOF1-206ENST00000445265 FOXP1Q9H334 677 aaPredicted RBP18.72■□□□□ 0.59
TCOF1-206ENST00000445265 TAB2Q9NYJ8 693 aa18.72■□□□□ 0.59
TCOF1-206ENST00000445265 MAPK8IP1Q9UQF2 711 aa18.72■□□□□ 0.59
TCOF1-206ENST00000445265 CD163L1Q9NR16 1453 aa18.71■□□□□ 0.59
TCOF1-206ENST00000445265 PARP1P09874 1014 aaKnown RBP18.71■□□□□ 0.59
TCOF1-206ENST00000445265 NBPF11Q86T75 865 aa18.71■□□□□ 0.59
TCOF1-206ENST00000445265 TNKSO95271 1327 aa18.71■□□□□ 0.59
TCOF1-206ENST00000445265 MAATS1Q7Z4T9 603 aa18.71■□□□□ 0.59
TCOF1-206ENST00000445265 ARHGEF28Q8N1W1 1705 aaKnown RBP18.71■□□□□ 0.59
TCOF1-206ENST00000445265 CNNM4Q6P4Q7 775 aa18.71■□□□□ 0.59
TCOF1-206ENST00000445265 ST5P78524 1137 aa18.71■□□□□ 0.59
TCOF1-206ENST00000445265 PUS7LQ9H0K6 701 aaKnown RBP18.71■□□□□ 0.59
TCOF1-206ENST00000445265 SPATA1Q5VX52 437 aa18.7■□□□□ 0.58
TCOF1-206ENST00000445265 TNNI2P48788 182 aa18.7■□□□□ 0.58
TCOF1-206ENST00000445265 NELFBQ8WX92 580 aa18.7■□□□□ 0.58
TCOF1-206ENST00000445265 ZSCAN10Q96SZ4 725 aaPredicted RBP18.7■□□□□ 0.58
TCOF1-206ENST00000445265 A0A087WWV3 80 aa18.7■□□□□ 0.58
TCOF1-206ENST00000445265 PHACTR2O75167 634 aa18.7■□□□□ 0.58
TCOF1-206ENST00000445265 CCDC172P0C7W6 258 aa18.7■□□□□ 0.58
TCOF1-206ENST00000445265 HSPA2P54652 639 aa18.7■□□□□ 0.58
TCOF1-206ENST00000445265 GNL3Q9BVP2 549 aaKnown RBP eCLIP18.7■□□□□ 0.58
TCOF1-206ENST00000445265 CARD10Q9BWT7 1032 aa18.7■□□□□ 0.58
TCOF1-206ENST00000445265 ERCC5P28715 1186 aaPredicted RBP18.7■□□□□ 0.58
TCOF1-206ENST00000445265 SELENOOQ9BVL4 669 aa18.7■□□□□ 0.58
TCOF1-206ENST00000445265 TECPR2O15040 1411 aa18.69■□□□□ 0.58
TCOF1-206ENST00000445265 hCG_1642624A0A1W2PR95 340 aa18.69■□□□□ 0.58
TCOF1-206ENST00000445265 SH2B2O14492 632 aaPredicted RBP18.69■□□□□ 0.58
TCOF1-206ENST00000445265 FMNL1O95466 1100 aaPredicted RBP18.69■□□□□ 0.58
TCOF1-206ENST00000445265 ZNF827Q17R98 1081 aa18.69■□□□□ 0.58
TCOF1-206ENST00000445265 PLA2G4DQ86XP0 818 aa18.69■□□□□ 0.58
TCOF1-206ENST00000445265 SMARCC2Q8TAQ2 1214 aa18.69■□□□□ 0.58
TCOF1-206ENST00000445265 AGLP35573 1532 aa18.69■□□□□ 0.58
TCOF1-206ENST00000445265 STAMQ92783 540 aa18.69■□□□□ 0.58
TCOF1-206ENST00000445265 RSPH14Q9UHP6 348 aa18.69■□□□□ 0.58
TCOF1-206ENST00000445265 BRD3Q15059 726 aa18.69■□□□□ 0.58
TCOF1-206ENST00000445265 AATFQ9NY61 560 aaKnown RBP eCLIP18.69■□□□□ 0.58
TCOF1-206ENST00000445265 WDR17Q8IZU2 1322 aa18.69■□□□□ 0.58
TCOF1-206ENST00000445265 IFNAR1P17181 557 aa18.69■□□□□ 0.58
TCOF1-206ENST00000445265 VAV2P52735 878 aa18.69■□□□□ 0.58
TCOF1-206ENST00000445265 TRAF1Q13077 416 aa18.69■□□□□ 0.58
TCOF1-206ENST00000445265 CLTCQ00610 1675 aaKnown RBP18.68■□□□□ 0.58
TCOF1-206ENST00000445265 PCP11498 1178 aaKnown RBP18.68■□□□□ 0.58
TCOF1-206ENST00000445265 CETN2P41208 172 aa18.68■□□□□ 0.58
TCOF1-206ENST00000445265 KRT25Q7Z3Z0 450 aa18.68■□□□□ 0.58
TCOF1-206ENST00000445265 CERS3Q8IU89 383 aa18.68■□□□□ 0.58
TCOF1-206ENST00000445265 CMTR1Q8N1G2 835 aaKnown RBP18.68■□□□□ 0.58
TCOF1-206ENST00000445265 LZTS2Q9BRK4 669 aa18.68■□□□□ 0.58
TCOF1-206ENST00000445265 SLAIN2Q9P270 581 aa18.68■□□□□ 0.58
TCOF1-206ENST00000445265 TMEM94Q12767 1356 aa18.68■□□□□ 0.58
TCOF1-206ENST00000445265 RNF26Q9BY78 433 aaPredicted RBP18.68■□□□□ 0.58
TCOF1-206ENST00000445265 BCCIPQ9P287 314 aaKnown RBP eCLIP18.68■□□□□ 0.58
TCOF1-206ENST00000445265 RTCBQ9Y3I0 505 aaKnown RBP18.68■□□□□ 0.58
TCOF1-206ENST00000445265 PREX1Q8TCU6 1659 aa18.68■□□□□ 0.58
TCOF1-206ENST00000445265 LIFRP42702 1097 aa18.68■□□□□ 0.58
TCOF1-206ENST00000445265 WDR66Q8TBY9 1149 aa18.68■□□□□ 0.58
TCOF1-206ENST00000445265 JAKMIP2Q96AA8 810 aa18.68■□□□□ 0.58
TCOF1-206ENST00000445265 CYP27B1O15528 508 aa18.67■□□□□ 0.58
TCOF1-206ENST00000445265 TAOK3Q9H2K8 898 aa18.67■□□□□ 0.58
TCOF1-206ENST00000445265 MACROD2A1Z1Q3 448 aa18.67■□□□□ 0.58
TCOF1-206ENST00000445265 USP17L12C9JPN9 530 aa18.67■□□□□ 0.58
TCOF1-206ENST00000445265 USP17L21D6R901 530 aa18.67■□□□□ 0.58
TCOF1-206ENST00000445265 SLF1Q9BQI6 1058 aa18.67■□□□□ 0.58
TCOF1-206ENST00000445265 POTEJP0CG39 1038 aa18.67■□□□□ 0.58
TCOF1-206ENST00000445265 BCAMP50895 628 aa18.67■□□□□ 0.58
TCOF1-206ENST00000445265 NONOQ15233 471 aaKnown RBP eCLIP18.67■□□□□ 0.58
TCOF1-206ENST00000445265 GSDMAQ96QA5 445 aa18.67■□□□□ 0.58
TCOF1-206ENST00000445265 DESI2Q9BSY9 194 aa18.67■□□□□ 0.58
TCOF1-206ENST00000445265 IL25Q9H293 177 aa18.67■□□□□ 0.58
TCOF1-206ENST00000445265 ARPP21Q9UBL0 812 aaPredicted RBP18.67■□□□□ 0.58
TCOF1-206ENST00000445265 JAG2Q9Y219 1238 aa18.67■□□□□ 0.58
TCOF1-206ENST00000445265 AXIN2Q9Y2T1 843 aa18.67■□□□□ 0.58
TCOF1-206ENST00000445265 PI16Q6UXB8 463 aa18.67■□□□□ 0.58
TCOF1-206ENST00000445265 BLZF1Q9H2G9 400 aa18.67■□□□□ 0.58
TCOF1-206ENST00000445265 PHLPP2Q6ZVD8 1323 aa18.66■□□□□ 0.58
TCOF1-206ENST00000445265 PRPF4BQ13523 1007 aaKnown RBP18.66■□□□□ 0.58
TCOF1-206ENST00000445265 NAP1L4Q99733 375 aaKnown RBP18.66■□□□□ 0.58
TCOF1-206ENST00000445265 OR8K1Q8NGG5 319 aa18.66■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 96 ms