RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 CSRNP2Q9H175 543 aa13.52□□□□□ -0.24
CD44-209ENST00000433892 VPS54Q9P1Q0 977 aa13.52□□□□□ -0.24
CD44-209ENST00000433892 NFE2L3Q9Y4A8 694 aa13.52□□□□□ -0.24
CD44-209ENST00000433892 CYP2D7A0A087X1C5 515 aa13.52□□□□□ -0.25
CD44-209ENST00000433892 LOC102724428A0A0B4J2F2 783 aa13.52□□□□□ -0.25
CD44-209ENST00000433892 MYO1BO43795 1136 aa13.52□□□□□ -0.25
CD44-209ENST00000433892 CDK11BP21127 795 aaKnown RBP13.52□□□□□ -0.25
CD44-209ENST00000433892 SARSP49591 514 aaKnown RBP13.52□□□□□ -0.25
CD44-209ENST00000433892 SIK1P57059 783 aa13.52□□□□□ -0.25
CD44-209ENST00000433892 ETF1P62495 437 aaKnown RBP13.52□□□□□ -0.25
CD44-209ENST00000433892 ITPK1Q13572 414 aa13.52□□□□□ -0.25
CD44-209ENST00000433892 SEC23AQ15436 765 aa13.52□□□□□ -0.25
CD44-209ENST00000433892 FBXO38Q6PIJ6 1188 aa13.52□□□□□ -0.25
CD44-209ENST00000433892 MTA3Q9BTC8 594 aa13.52□□□□□ -0.25
CD44-209ENST00000433892 DNAI1Q9UI46 699 aa13.52□□□□□ -0.25
CD44-209ENST00000433892 PRDM1O75626 825 aa13.51□□□□□ -0.25
CD44-209ENST00000433892 AKAP17AQ02040 695 aaKnown RBP13.51□□□□□ -0.25
CD44-209ENST00000433892 MORC3Q14149 939 aa13.51□□□□□ -0.25
CD44-209ENST00000433892 ERCC6LQ2NKX8 1250 aa13.51□□□□□ -0.25
CD44-209ENST00000433892 CCDC93Q567U6 631 aa13.51□□□□□ -0.25
CD44-209ENST00000433892 NT5DC1Q5TFE4 455 aa13.51□□□□□ -0.25
CD44-209ENST00000433892 ENAHQ8N8S7 591 aaPredicted RBP13.51□□□□□ -0.25
CD44-209ENST00000433892 ZNF579Q8NAF0 562 aaKnown RBP13.51□□□□□ -0.25
CD44-209ENST00000433892 MLKLQ8NB16 471 aa13.51□□□□□ -0.25
CD44-209ENST00000433892 CEP131Q9UPN4 1083 aa13.51□□□□□ -0.25
CD44-209ENST00000433892 BCORQ6W2J9 1755 aa13.51□□□□□ -0.25
CD44-209ENST00000433892 ACTN4O43707 911 aaKnown RBP13.51□□□□□ -0.25
CD44-209ENST00000433892 RCAN1P53805 252 aa13.51□□□□□ -0.25
CD44-209ENST00000433892 DYNLL1P63167 89 aaKnown RBP13.51□□□□□ -0.25
CD44-209ENST00000433892 EARS2Q5JPH6 523 aaKnown RBP13.51□□□□□ -0.25
CD44-209ENST00000433892 RNF26Q9BY78 433 aaPredicted RBP13.51□□□□□ -0.25
CD44-209ENST00000433892 COL4A1P02462 1669 aa13.5□□□□□ -0.25
CD44-209ENST00000433892 CCP110O43303 1012 aa13.5□□□□□ -0.25
CD44-209ENST00000433892 ZNF18P17022 549 aa13.5□□□□□ -0.25
CD44-209ENST00000433892 PKN1Q16512 942 aa13.5□□□□□ -0.25
CD44-209ENST00000433892 TRIM65Q6PJ69 517 aa13.5□□□□□ -0.25
CD44-209ENST00000433892 TMEM139Q8IV31 216 aa13.5□□□□□ -0.25
CD44-209ENST00000433892 REXO1L1PQ8IX06 675 aa13.5□□□□□ -0.25
CD44-209ENST00000433892 EPSTI1Q96J88 318 aa13.5□□□□□ -0.25
CD44-209ENST00000433892 MED15Q96RN5 788 aa13.5□□□□□ -0.25
CD44-209ENST00000433892 ZSCAN10Q96SZ4 725 aaPredicted RBP13.5□□□□□ -0.25
CD44-209ENST00000433892 RIOK1Q9BRS2 568 aaKnown RBP13.5□□□□□ -0.25
CD44-209ENST00000433892 SAMSN1Q9NSI8 373 aaKnown RBP13.5□□□□□ -0.25
CD44-209ENST00000433892 ANAPC4Q9UJX5 808 aa13.5□□□□□ -0.25
CD44-209ENST00000433892 DOT1LQ8TEK3 1739 aa13.5□□□□□ -0.25
CD44-209ENST00000433892 RTL9Q8NET4 1388 aa13.5□□□□□ -0.25
CD44-209ENST00000433892 TRIM75PA6NK02 468 aa13.5□□□□□ -0.25
CD44-209ENST00000433892 IGSF3O75054 1194 aa13.5□□□□□ -0.25
CD44-209ENST00000433892 PLEKHA8P1O95397 391 aa13.5□□□□□ -0.25
CD44-209ENST00000433892 TUBB4AP04350 444 aa13.5□□□□□ -0.25
CD44-209ENST00000433892 DDB1Q16531 1140 aa13.5□□□□□ -0.25
CD44-209ENST00000433892 IFIT1BQ5T764 474 aaKnown RBP13.5□□□□□ -0.25
CD44-209ENST00000433892 UTP14CQ5TAP6 766 aaKnown RBP13.5□□□□□ -0.25
CD44-209ENST00000433892 C3orf67Q6ZVT6 689 aa13.5□□□□□ -0.25
CD44-209ENST00000433892 ENOX1Q8TC92 643 aaKnown RBP13.5□□□□□ -0.25
CD44-209ENST00000433892 DHX58Q96C10 678 aa13.5□□□□□ -0.25
CD44-209ENST00000433892 CDC5LQ99459 802 aaKnown RBP13.5□□□□□ -0.25
CD44-209ENST00000433892 DACH1Q9UI36 760 aa13.5□□□□□ -0.25
CD44-209ENST00000433892 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.5□□□□□ -0.25
CD44-209ENST00000433892 V9GY48 417 aaPredicted RBP13.5□□□□□ -0.25
CD44-209ENST00000433892 ZNF804BA4D1E1 1349 aa13.49□□□□□ -0.25
CD44-209ENST00000433892 BCL9LQ86UU0 1499 aa13.49□□□□□ -0.25
CD44-209ENST00000433892 COL14A1Q05707 1796 aaKnown RBP13.49□□□□□ -0.25
CD44-209ENST00000433892 A0A087X0B3 334 aa13.49□□□□□ -0.25
CD44-209ENST00000433892 FANCGO15287 622 aa13.49□□□□□ -0.25
CD44-209ENST00000433892 XBP1P17861 261 aa13.49□□□□□ -0.25
CD44-209ENST00000433892 ADKP55263 362 aaKnown RBP13.49□□□□□ -0.25
CD44-209ENST00000433892 TBX2Q13207 712 aaPredicted RBP13.49□□□□□ -0.25
CD44-209ENST00000433892 FAM177A1Q8N128 213 aaPredicted RBP13.49□□□□□ -0.25
CD44-209ENST00000433892 BAG1Q99933 345 aaPredicted RBP13.49□□□□□ -0.25
CD44-209ENST00000433892 GNL3LQ9NVN8 582 aaKnown RBP13.49□□□□□ -0.25
CD44-209ENST00000433892 ZHX1Q9UKY1 873 aaPredicted RBP13.49□□□□□ -0.25
CD44-209ENST00000433892 MORC2Q9Y6X9 1032 aaPredicted RBP13.49□□□□□ -0.25
CD44-209ENST00000433892 ARHGAP6O43182 974 aa13.48□□□□□ -0.25
CD44-209ENST00000433892 CASP1P29466 404 aa13.48□□□□□ -0.25
CD44-209ENST00000433892 KRT2P35908 639 aa13.48□□□□□ -0.25
CD44-209ENST00000433892 AFMP43652 599 aa13.48□□□□□ -0.25
CD44-209ENST00000433892 FUT2Q10981 343 aa13.48□□□□□ -0.25
CD44-209ENST00000433892 SPECC1LQ69YQ0 1117 aa13.48□□□□□ -0.25
CD44-209ENST00000433892 KANK3Q6NY19 840 aa13.48□□□□□ -0.25
CD44-209ENST00000433892 CATIPQ7Z7H3 387 aa13.48□□□□□ -0.25
CD44-209ENST00000433892 PHF20Q9BVI0 1012 aa13.48□□□□□ -0.25
CD44-209ENST00000433892 GTPBP4Q9BZE4 634 aaKnown RBP13.48□□□□□ -0.25
CD44-209ENST00000433892 PPP2R2CQ9Y2T4 447 aa13.48□□□□□ -0.25
CD44-209ENST00000433892 PHLPP2Q6ZVD8 1323 aa13.48□□□□□ -0.25
CD44-209ENST00000433892 COL1A1P02452 1464 aaPredicted RBP13.48□□□□□ -0.25
CD44-209ENST00000433892 WNT7AO00755 349 aa13.48□□□□□ -0.25
CD44-209ENST00000433892 PPP2R5BQ15173 497 aa13.48□□□□□ -0.25
CD44-209ENST00000433892 ERFEQ4G0M1 354 aa13.48□□□□□ -0.25
CD44-209ENST00000433892 NOM1Q5C9Z4 860 aaKnown RBP13.48□□□□□ -0.25
CD44-209ENST00000433892 NUTM2AQ8IVF1 878 aaPredicted RBP13.48□□□□□ -0.25
CD44-209ENST00000433892 ANKRD18AQ8IVF6 992 aa13.48□□□□□ -0.25
CD44-209ENST00000433892 TC2NQ8N9U0 490 aa13.48□□□□□ -0.25
CD44-209ENST00000433892 TRIML1Q8N9V2 468 aa13.48□□□□□ -0.25
CD44-209ENST00000433892 SPATA20Q8TB22 786 aa13.48□□□□□ -0.25
CD44-209ENST00000433892 ZNF384Q8TF68 577 aa13.48□□□□□ -0.25
CD44-209ENST00000433892 PLCH1Q4KWH8 1693 aa13.48□□□□□ -0.25
CD44-209ENST00000433892 ZSCAN12O43309 604 aa13.47□□□□□ -0.25
CD44-209ENST00000433892 URI1O94763 535 aaPredicted RBP13.47□□□□□ -0.25
CD44-209ENST00000433892 EVX2Q03828 476 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 80.6 ms