RNA–Protein interactions for RNA: ENST00000409915.8

SF3B1-202, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2 BASIC

Gene SF3B1, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-202ENST00000409915 ALKBH8Q96BT7 664 aaKnown RBP5.56□□□□□ -1.52
SF3B1-202ENST00000409915 IL17RAQ96F46 866 aa5.56□□□□□ -1.52
SF3B1-202ENST00000409915 TEX13AQ9BXU3 409 aaPredicted RBP5.56□□□□□ -1.52
SF3B1-202ENST00000409915 TRIM55Q9BYV6 548 aa5.56□□□□□ -1.52
SF3B1-202ENST00000409915 ZNF408Q9H9D4 720 aa5.56□□□□□ -1.52
SF3B1-202ENST00000409915 BABAM1Q9NWV8 329 aa5.56□□□□□ -1.52
SF3B1-202ENST00000409915 NARFQ9UHQ1 456 aa5.56□□□□□ -1.52
SF3B1-202ENST00000409915 GGT7Q9UJ14 662 aa5.56□□□□□ -1.52
SF3B1-202ENST00000409915 AK5Q9Y6K8 562 aa5.56□□□□□ -1.52
SF3B1-202ENST00000409915 COL24A1Q17RW2 1714 aa5.56□□□□□ -1.52
SF3B1-202ENST00000409915 BCORQ6W2J9 1755 aa5.55□□□□□ -1.52
SF3B1-202ENST00000409915 ZNF521Q96K83 1311 aa5.55□□□□□ -1.52
SF3B1-202ENST00000409915 FZD6O60353 706 aa5.55□□□□□ -1.52
SF3B1-202ENST00000409915 CAMTA2O94983 1202 aa5.55□□□□□ -1.52
SF3B1-202ENST00000409915 LDHAP00338 332 aaKnown RBP5.55□□□□□ -1.52
SF3B1-202ENST00000409915 HMGB2P26583 209 aaKnown RBP5.55□□□□□ -1.52
SF3B1-202ENST00000409915 MZF1P28698 734 aaPredicted RBP5.55□□□□□ -1.52
SF3B1-202ENST00000409915 GNALP38405 381 aa5.55□□□□□ -1.52
SF3B1-202ENST00000409915 GYS2P54840 703 aa5.55□□□□□ -1.52
SF3B1-202ENST00000409915 DHX8Q14562 1220 aaKnown RBP5.55□□□□□ -1.52
SF3B1-202ENST00000409915 NFIXQ14938 502 aa5.55□□□□□ -1.52
SF3B1-202ENST00000409915 ARSHQ5FYA8 562 aa5.55□□□□□ -1.52
SF3B1-202ENST00000409915 TBC1D9BQ66K14 1250 aa5.55□□□□□ -1.52
SF3B1-202ENST00000409915 DESI1Q6ICB0 168 aa5.55□□□□□ -1.52
SF3B1-202ENST00000409915 LYPD8Q6UX82 237 aa5.55□□□□□ -1.52
SF3B1-202ENST00000409915 RETREG3Q86VR2 466 aa5.55□□□□□ -1.52
SF3B1-202ENST00000409915 RAVER1Q8IY67 606 aaKnown RBP5.55□□□□□ -1.52
SF3B1-202ENST00000409915 SMAP1Q8IYB5 467 aaPredicted RBP5.55□□□□□ -1.52
SF3B1-202ENST00000409915 CCDC24Q8N4L8 307 aa5.55□□□□□ -1.52
SF3B1-202ENST00000409915 TSEN2Q8NCE0 465 aaKnown RBP5.55□□□□□ -1.52
SF3B1-202ENST00000409915 RELTQ969Z4 430 aa5.55□□□□□ -1.52
SF3B1-202ENST00000409915 DEPDC7Q96QD5 511 aa5.55□□□□□ -1.52
SF3B1-202ENST00000409915 MPHOSPH6Q99547 160 aaKnown RBP5.55□□□□□ -1.52
SF3B1-202ENST00000409915 SENP7Q9BQF6 1050 aa5.55□□□□□ -1.52
SF3B1-202ENST00000409915 NIF3L1Q9GZT8 377 aa5.55□□□□□ -1.52
SF3B1-202ENST00000409915 KANSL2Q9H9L4 492 aa5.55□□□□□ -1.52
SF3B1-202ENST00000409915 SFMBT1Q9UHJ3 866 aa5.55□□□□□ -1.52
SF3B1-202ENST00000409915 FBXO9Q9UK97 447 aaPredicted RBP5.55□□□□□ -1.52
SF3B1-202ENST00000409915 CARMIL3Q8ND23 1372 aa5.55□□□□□ -1.52
SF3B1-202ENST00000409915 IL16Q14005 1332 aa5.54□□□□□ -1.52
SF3B1-202ENST00000409915 A0A087WZG4 1122 aa5.54□□□□□ -1.52
SF3B1-202ENST00000409915 FAM221BA6H8Z2 402 aa5.54□□□□□ -1.52
SF3B1-202ENST00000409915 FAM177BA6PVY3 158 aa5.54□□□□□ -1.52
SF3B1-202ENST00000409915 POLRMTO00411 1230 aaKnown RBP5.54□□□□□ -1.52
SF3B1-202ENST00000409915 CD2BP2O95400 341 aaKnown RBP5.54□□□□□ -1.52
SF3B1-202ENST00000409915 HCLS1P14317 486 aaPredicted RBP5.54□□□□□ -1.52
SF3B1-202ENST00000409915 BDNFP23560 247 aa5.54□□□□□ -1.52
SF3B1-202ENST00000409915 ANP32AP39687 249 aaKnown RBP5.54□□□□□ -1.52
SF3B1-202ENST00000409915 EIF1AXP47813 144 aaKnown RBP5.54□□□□□ -1.52
SF3B1-202ENST00000409915 EXOSC9Q06265 439 aaKnown RBP5.54□□□□□ -1.52
SF3B1-202ENST00000409915 AIMP1Q12904 312 aaKnown RBP5.54□□□□□ -1.52
SF3B1-202ENST00000409915 NFX1Q12986 1120 aaKnown RBP5.54□□□□□ -1.52
SF3B1-202ENST00000409915 RASA3Q14644 834 aa5.54□□□□□ -1.52
SF3B1-202ENST00000409915 HLFQ16534 295 aa5.54□□□□□ -1.52
SF3B1-202ENST00000409915 WDR78Q5VTH9 848 aa5.54□□□□□ -1.52
SF3B1-202ENST00000409915 PTCRAQ6ISU1 281 aaPredicted RBP5.54□□□□□ -1.52
SF3B1-202ENST00000409915 ANKS3Q6ZW76 656 aa5.54□□□□□ -1.52
SF3B1-202ENST00000409915 LRP10Q7Z4F1 713 aa5.54□□□□□ -1.52
SF3B1-202ENST00000409915 WDR63Q8IWG1 891 aa5.54□□□□□ -1.52
SF3B1-202ENST00000409915 CNPY4Q8N129 248 aa5.54□□□□□ -1.52
SF3B1-202ENST00000409915 XAGE3Q8WTP9 111 aa5.54□□□□□ -1.52
SF3B1-202ENST00000409915 SYT17Q9BSW7 474 aa5.54□□□□□ -1.52
SF3B1-202ENST00000409915 C10orf71Q711Q0 1435 aa5.54□□□□□ -1.52
SF3B1-202ENST00000409915 UTRNP46939 3433 aa5.53□□□□□ -1.52
SF3B1-202ENST00000409915 ESYT3A0FGR9 886 aa5.53□□□□□ -1.52
SF3B1-202ENST00000409915 DGAT1O75907 488 aa5.53□□□□□ -1.52
SF3B1-202ENST00000409915 TPM2P07951 284 aa5.53□□□□□ -1.52
SF3B1-202ENST00000409915 HOXB7P09629 217 aa5.53□□□□□ -1.52
SF3B1-202ENST00000409915 GPTP24298 496 aa5.53□□□□□ -1.52
SF3B1-202ENST00000409915 MASP1P48740 699 aa5.53□□□□□ -1.52
SF3B1-202ENST00000409915 MMP14P50281 582 aa5.53□□□□□ -1.52
SF3B1-202ENST00000409915 SKOR1P84550 965 aa5.53□□□□□ -1.52
SF3B1-202ENST00000409915 HNRNPUQ00839 825 aaKnown RBP eCLIP5.53□□□□□ -1.52
SF3B1-202ENST00000409915 PTK2Q05397 1052 aa5.53□□□□□ -1.52
SF3B1-202ENST00000409915 TWISTNBQ3B726 338 aaPredicted RBP5.53□□□□□ -1.52
SF3B1-202ENST00000409915 ALKBH2Q6NS38 261 aa5.53□□□□□ -1.52
SF3B1-202ENST00000409915 KIF6Q6ZMV9 814 aa5.53□□□□□ -1.52
SF3B1-202ENST00000409915 COPS6Q7L5N1 327 aa5.53□□□□□ -1.52
SF3B1-202ENST00000409915 KIAA0907Q7Z7F0 614 aaPredicted RBP5.53□□□□□ -1.52
SF3B1-202ENST00000409915 HOMER1Q86YM7 354 aa5.53□□□□□ -1.52
SF3B1-202ENST00000409915 PGBD3Q8N328 593 aa5.53□□□□□ -1.52
SF3B1-202ENST00000409915 CCDC85AQ96PX6 553 aaPredicted RBP5.53□□□□□ -1.52
SF3B1-202ENST00000409915 MAP7D2Q96T17 732 aa5.53□□□□□ -1.52
SF3B1-202ENST00000409915 NAP1L4Q99733 375 aaKnown RBP5.53□□□□□ -1.52
SF3B1-202ENST00000409915 TMX4Q9H1E5 349 aaPredicted RBP5.53□□□□□ -1.52
SF3B1-202ENST00000409915 PHAXQ9H814 394 aaKnown RBP5.53□□□□□ -1.52
SF3B1-202ENST00000409915 PCDHGA11Q9Y5H2 935 aa5.53□□□□□ -1.52
SF3B1-202ENST00000409915 PARP3Q9Y6F1 533 aa5.53□□□□□ -1.52
SF3B1-202ENST00000409915 PXDNLA1KZ92 1463 aa5.52□□□□□ -1.53
SF3B1-202ENST00000409915 ERBB4Q15303 1308 aa5.52□□□□□ -1.53
SF3B1-202ENST00000409915 MAP3K15Q6ZN16 1313 aa5.52□□□□□ -1.53
SF3B1-202ENST00000409915 UBN2Q6ZU65 1347 aa5.52□□□□□ -1.53
SF3B1-202ENST00000409915 CCDC85CA6NKD9 419 aa5.52□□□□□ -1.53
SF3B1-202ENST00000409915 ST8SIA5O15466 376 aa5.52□□□□□ -1.53
SF3B1-202ENST00000409915 CAND2O75155 1236 aa5.52□□□□□ -1.53
SF3B1-202ENST00000409915 SERPINB2P05120 415 aa5.52□□□□□ -1.53
SF3B1-202ENST00000409915 JUNDP17535 347 aa5.52□□□□□ -1.53
SF3B1-202ENST00000409915 TM4SF1P30408 202 aa5.52□□□□□ -1.53
SF3B1-202ENST00000409915 TERF1P54274 439 aa5.52□□□□□ -1.53
SF3B1-202ENST00000409915 PRR20EP86478 221 aa5.52□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 85.5 ms