RNA–Protein interactions for RNA: ENST00000393310.5

LIMS1-203, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 4,392 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-203ENST00000393310 TDRD3Q9H7E2 651 aaKnown RBP9.4□□□□□ -0.91
LIMS1-203ENST00000393310 FAM184BQ9ULE4 1060 aa9.4□□□□□ -0.91
LIMS1-203ENST00000393310 GNAI2P04899 355 aa9.39□□□□□ -0.91
LIMS1-203ENST00000393310 CPLX2Q6PUV4 134 aaKnown RBP9.39□□□□□ -0.91
LIMS1-203ENST00000393310 DNAJC5GQ8N7S2 189 aa9.39□□□□□ -0.91
LIMS1-203ENST00000393310 U2AF1L4Q8WU68 220 aaKnown RBP9.39□□□□□ -0.91
LIMS1-203ENST00000393310 XRN2Q9H0D6 950 aaKnown RBP eCLIP9.39□□□□□ -0.91
LIMS1-203ENST00000393310 ANAPC4Q9UJX5 808 aa9.39□□□□□ -0.91
LIMS1-203ENST00000393310 TLR2O60603 784 aa9.39□□□□□ -0.91
LIMS1-203ENST00000393310 MNX1P50219 401 aaPredicted RBP9.39□□□□□ -0.91
LIMS1-203ENST00000393310 PPP4R3AQ6IN85 833 aa9.39□□□□□ -0.91
LIMS1-203ENST00000393310 SCYL3Q8IZE3 742 aa9.39□□□□□ -0.91
LIMS1-203ENST00000393310 ZKSCAN4Q969J2 545 aaPredicted RBP9.39□□□□□ -0.91
LIMS1-203ENST00000393310 MFSD1Q9H3U5 465 aa9.39□□□□□ -0.91
LIMS1-203ENST00000393310 PUF60Q9UHX1 559 aaKnown RBP9.39□□□□□ -0.91
LIMS1-203ENST00000393310 TPD52L2O43399 206 aaKnown RBP9.39□□□□□ -0.91
LIMS1-203ENST00000393310 STRNO43815 780 aa9.39□□□□□ -0.91
LIMS1-203ENST00000393310 UTP14CQ5TAP6 766 aaKnown RBP9.39□□□□□ -0.91
LIMS1-203ENST00000393310 HHIPL2Q6UWX4 724 aa9.39□□□□□ -0.91
LIMS1-203ENST00000393310 GIMAP7Q8NHV1 300 aa9.39□□□□□ -0.91
LIMS1-203ENST00000393310 STARD7Q9NQZ5 370 aa9.39□□□□□ -0.91
LIMS1-203ENST00000393310 POLR3EQ9NVU0 708 aa9.39□□□□□ -0.91
LIMS1-203ENST00000393310 ASB14A6NK59 587 aa9.38□□□□□ -0.91
LIMS1-203ENST00000393310 NR1I2O75469 434 aa9.38□□□□□ -0.91
LIMS1-203ENST00000393310 ANXA1P04083 346 aa9.38□□□□□ -0.91
LIMS1-203ENST00000393310 KPNA6O60684 536 aa9.38□□□□□ -0.91
LIMS1-203ENST00000393310 PARNO95453 639 aaKnown RBP9.38□□□□□ -0.91
LIMS1-203ENST00000393310 NTSR2O95665 410 aa9.38□□□□□ -0.91
LIMS1-203ENST00000393310 RPLP2P05387 115 aaKnown RBP9.38□□□□□ -0.91
LIMS1-203ENST00000393310 CCDC91Q7Z6B0 441 aa9.38□□□□□ -0.91
LIMS1-203ENST00000393310 WDR63Q8IWG1 891 aa9.38□□□□□ -0.91
LIMS1-203ENST00000393310 POP1Q99575 1024 aaKnown RBP9.38□□□□□ -0.91
LIMS1-203ENST00000393310 RTFDC1Q9BY42 306 aaPredicted RBP9.38□□□□□ -0.91
LIMS1-203ENST00000393310 DNAI2Q9GZS0 605 aa9.38□□□□□ -0.91
LIMS1-203ENST00000393310 AAASQ9NRG9 546 aa9.38□□□□□ -0.91
LIMS1-203ENST00000393310 HLFQ16534 295 aa9.38□□□□□ -0.91
LIMS1-203ENST00000393310 PUS10Q3MIT2 529 aaKnown RBP9.38□□□□□ -0.91
LIMS1-203ENST00000393310 HACE1Q8IYU2 909 aa9.38□□□□□ -0.91
LIMS1-203ENST00000393310 ZNF280CQ8ND82 737 aa9.38□□□□□ -0.91
LIMS1-203ENST00000393310 JAG2Q9Y219 1238 aa9.38□□□□□ -0.91
LIMS1-203ENST00000393310 NCK2O43639 380 aa9.38□□□□□ -0.91
LIMS1-203ENST00000393310 CYP7A1P22680 504 aa9.38□□□□□ -0.91
LIMS1-203ENST00000393310 HSFX4A0A1B0GTS1 333 aaPredicted RBP9.37□□□□□ -0.91
LIMS1-203ENST00000393310 HSFX3A0A1B0GWH4 333 aaPredicted RBP9.37□□□□□ -0.91
LIMS1-203ENST00000393310 IPO7O95373 1038 aaKnown RBP9.37□□□□□ -0.91
LIMS1-203ENST00000393310 APBB1IPQ7Z5R6 666 aaPredicted RBP9.37□□□□□ -0.91
LIMS1-203ENST00000393310 ACRBPQ8NEB7 543 aa9.37□□□□□ -0.91
LIMS1-203ENST00000393310 MICAL1Q8TDZ2 1067 aa9.37□□□□□ -0.91
LIMS1-203ENST00000393310 SENP6Q9GZR1 1112 aaPredicted RBP9.37□□□□□ -0.91
LIMS1-203ENST00000393310 THEGQ9P2T0 379 aa9.37□□□□□ -0.91
LIMS1-203ENST00000393310 ALADP13716 330 aa9.37□□□□□ -0.91
LIMS1-203ENST00000393310 PROCA1Q8NCQ7 364 aaPredicted RBP9.37□□□□□ -0.91
LIMS1-203ENST00000393310 POTEB2H3BUK9 544 aa9.37□□□□□ -0.91
LIMS1-203ENST00000393310 FLOT1O75955 427 aa9.37□□□□□ -0.91
LIMS1-203ENST00000393310 PXYLP1Q8TE99 480 aa9.37□□□□□ -0.91
LIMS1-203ENST00000393310 PTCH2Q9Y6C5 1203 aa9.37□□□□□ -0.91
LIMS1-203ENST00000393310 SGPL1O95470 568 aa9.36□□□□□ -0.91
LIMS1-203ENST00000393310 PTPRCP08575 1304 aa9.36□□□□□ -0.91
LIMS1-203ENST00000393310 SWAP70Q9UH65 585 aa9.36□□□□□ -0.91
LIMS1-203ENST00000393310 IQSEC3Q9UPP2 1182 aaPredicted RBP9.36□□□□□ -0.91
LIMS1-203ENST00000393310 TAX1BP1Q86VP1 789 aa9.36□□□□□ -0.91
LIMS1-203ENST00000393310 RNF41Q9H4P4 317 aaPredicted RBP9.36□□□□□ -0.91
LIMS1-203ENST00000393310 DPP7Q9UHL4 492 aa9.36□□□□□ -0.91
LIMS1-203ENST00000393310 SPDYE5A6NIY4 337 aa9.36□□□□□ -0.91
LIMS1-203ENST00000393310 SURF6O75683 361 aaKnown RBP9.36□□□□□ -0.91
LIMS1-203ENST00000393310 INHAP05111 366 aa9.36□□□□□ -0.91
LIMS1-203ENST00000393310 ZNF280AP59817 542 aaPredicted RBP9.36□□□□□ -0.91
LIMS1-203ENST00000393310 CRY2Q49AN0 593 aa9.36□□□□□ -0.91
LIMS1-203ENST00000393310 ITPRIPQ8IWB1 547 aa9.36□□□□□ -0.91
LIMS1-203ENST00000393310 CELF1Q92879 486 aaKnown RBP9.36□□□□□ -0.91
LIMS1-203ENST00000393310 CEP83Q9Y592 693 aa9.36□□□□□ -0.91
LIMS1-203ENST00000393310 PASKQ96RG2 1323 aa9.36□□□□□ -0.91
LIMS1-203ENST00000393310 MARF1Q9Y4F3 1742 aaKnown RBP9.35□□□□□ -0.91
LIMS1-203ENST00000393310 STK10O94804 968 aaKnown RBP9.35□□□□□ -0.91
LIMS1-203ENST00000393310 SPP2Q13103 211 aa9.35□□□□□ -0.91
LIMS1-203ENST00000393310 SPOCK2Q92563 424 aa9.35□□□□□ -0.91
LIMS1-203ENST00000393310 MROH8Q9H579 483 aa9.35□□□□□ -0.91
LIMS1-203ENST00000393310 RABGAP1Q9Y3P9 1069 aa9.35□□□□□ -0.91
LIMS1-203ENST00000393310 IL16Q14005 1332 aa9.35□□□□□ -0.91
LIMS1-203ENST00000393310 FLT3LGP49771 235 aa9.35□□□□□ -0.91
LIMS1-203ENST00000393310 CRHR2Q13324 411 aa9.35□□□□□ -0.91
LIMS1-203ENST00000393310 ABCB5Q2M3G0 1257 aa9.35□□□□□ -0.91
LIMS1-203ENST00000393310 CERKLQ49MI3 558 aaPredicted RBP9.35□□□□□ -0.91
LIMS1-203ENST00000393310 RUFY2Q8WXA3 655 aa9.35□□□□□ -0.91
LIMS1-203ENST00000393310 MINPP1Q9UNW1 487 aa9.35□□□□□ -0.91
LIMS1-203ENST00000393310 SLC4A7Q9Y6M7 1214 aa9.35□□□□□ -0.91
LIMS1-203ENST00000393310 THSD7AQ9UPZ6 1657 aa9.35□□□□□ -0.91
LIMS1-203ENST00000393310 SPDYE2BA6NHP3 402 aa9.35□□□□□ -0.91
LIMS1-203ENST00000393310 SPDYE6P0CI01 402 aa9.35□□□□□ -0.91
LIMS1-203ENST00000393310 TRIM21P19474 475 aaKnown RBP9.35□□□□□ -0.91
LIMS1-203ENST00000393310 IBSPP21815 317 aaPredicted RBP9.35□□□□□ -0.91
LIMS1-203ENST00000393310 ATN1P54259 1190 aaPredicted RBP9.35□□□□□ -0.91
LIMS1-203ENST00000393310 PPP2R5DQ14738 602 aa9.35□□□□□ -0.91
LIMS1-203ENST00000393310 CEP89Q96ST8 783 aa9.35□□□□□ -0.91
LIMS1-203ENST00000393310 APBA2Q99767 749 aa9.35□□□□□ -0.91
LIMS1-203ENST00000393310 CARD14Q9BXL6 1004 aa9.35□□□□□ -0.91
LIMS1-203ENST00000393310 WNT10BO00744 389 aa9.35□□□□□ -0.91
LIMS1-203ENST00000393310 LACTBP83111 547 aaPredicted RBP9.35□□□□□ -0.91
LIMS1-203ENST00000393310 FAM160A1Q05DH4 1040 aa9.35□□□□□ -0.91
LIMS1-203ENST00000393310 TRIM29Q14134 588 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms