RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 DPF2Q92785 391 aa31.43■■■□□ 2.62
MSX1-201ENST00000382723 RNF181Q9P0P0 153 aa31.43■■■□□ 2.62
MSX1-201ENST00000382723 CNOT7Q9UIV1 285 aaKnown RBP31.43■■■□□ 2.62
MSX1-201ENST00000382723 WNT10BO00744 389 aa31.43■■■□□ 2.62
MSX1-201ENST00000382723 ZBTB43O43298 467 aa31.43■■■□□ 2.62
MSX1-201ENST00000382723 JAK2O60674 1132 aa31.43■■■□□ 2.62
MSX1-201ENST00000382723 ENTPD3O75355 529 aa31.43■■■□□ 2.62
MSX1-201ENST00000382723 IFIT1BQ5T764 474 aaKnown RBP31.43■■■□□ 2.62
MSX1-201ENST00000382723 SYNE3Q6ZMZ3 975 aa31.43■■■□□ 2.62
MSX1-201ENST00000382723 CCDC144CPQ8IYA2 1237 aa31.43■■■□□ 2.62
MSX1-201ENST00000382723 MYO1BO43795 1136 aa31.42■■■□□ 2.62
MSX1-201ENST00000382723 METAP2P50579 478 aaKnown RBP eCLIP31.42■■■□□ 2.62
MSX1-201ENST00000382723 ZBED3Q96IU2 234 aaPredicted RBP31.42■■■□□ 2.62
MSX1-201ENST00000382723 EGFRP00533 1210 aa31.41■■■□□ 2.62
MSX1-201ENST00000382723 SLURP2P0DP57 97 aa31.41■■■□□ 2.62
MSX1-201ENST00000382723 NT5C2P49902 561 aa31.41■■■□□ 2.62
MSX1-201ENST00000382723 NUCB2P80303 420 aa31.41■■■□□ 2.62
MSX1-201ENST00000382723 CTDNEP1O95476 244 aa31.4■■■□□ 2.62
MSX1-201ENST00000382723 MMP14P50281 582 aa31.4■■■□□ 2.62
MSX1-201ENST00000382723 RAB3GAP1Q15042 981 aa31.4■■■□□ 2.62
MSX1-201ENST00000382723 SAMD7Q7Z3H4 446 aa31.4■■■□□ 2.62
MSX1-201ENST00000382723 CRACR2BQ8N4Y2 399 aaPredicted RBP31.4■■■□□ 2.62
MSX1-201ENST00000382723 IL17RBQ9NRM6 502 aa31.4■■■□□ 2.62
MSX1-201ENST00000382723 SWAP70Q9UH65 585 aa31.4■■■□□ 2.62
MSX1-201ENST00000382723 PPFIA3O75145 1194 aa31.39■■■□□ 2.62
MSX1-201ENST00000382723 GPR162Q16538 588 aa31.39■■■□□ 2.62
MSX1-201ENST00000382723 NSUN7Q8NE18 718 aaKnown RBP31.39■■■□□ 2.62
MSX1-201ENST00000382723 DDX11Q96FC9 970 aa31.39■■■□□ 2.62
MSX1-201ENST00000382723 LLPHQ9BRT6 129 aaKnown RBP31.39■■■□□ 2.62
MSX1-201ENST00000382723 PI4KBQ9UBF8 816 aa31.39■■■□□ 2.62
MSX1-201ENST00000382723 GOLGA8AA7E2F4 631 aa31.39■■■□□ 2.62
MSX1-201ENST00000382723 TBC1D10BQ4KMP7 808 aaPredicted RBP31.39■■■□□ 2.62
MSX1-201ENST00000382723 ZNF654Q8IZM8 581 aa31.39■■■□□ 2.62
MSX1-201ENST00000382723 EHD4Q9H223 541 aa31.39■■■□□ 2.62
MSX1-201ENST00000382723 DHX16O60231 1041 aaKnown RBP31.38■■■□□ 2.61
MSX1-201ENST00000382723 GPC2Q8N158 579 aa31.38■■■□□ 2.61
MSX1-201ENST00000382723 CHMP4CQ96CF2 233 aa31.38■■■□□ 2.61
MSX1-201ENST00000382723 PTPDC1A2A3K4 754 aa31.37■■■□□ 2.61
MSX1-201ENST00000382723 FAM196BA6NMK8 535 aa31.37■■■□□ 2.61
MSX1-201ENST00000382723 CPLX1O14810 134 aa31.37■■■□□ 2.61
MSX1-201ENST00000382723 FOXD4L5Q5VV16 416 aaPredicted RBP31.37■■■□□ 2.61
MSX1-201ENST00000382723 NUP133Q8WUM0 1156 aa31.37■■■□□ 2.61
MSX1-201ENST00000382723 FOXD4L4Q8WXT5 416 aaPredicted RBP31.37■■■□□ 2.61
MSX1-201ENST00000382723 SHMT1P34896 483 aa31.37■■■□□ 2.61
MSX1-201ENST00000382723 ADD1P35611 737 aaKnown RBP31.37■■■□□ 2.61
MSX1-201ENST00000382723 C9orf131Q5VYM1 1079 aa31.37■■■□□ 2.61
MSX1-201ENST00000382723 TRIM34Q9BYJ4 488 aa31.37■■■□□ 2.61
MSX1-201ENST00000382723 CDC27P30260 824 aa31.36■■■□□ 2.61
MSX1-201ENST00000382723 SMARCC2Q8TAQ2 1214 aa31.36■■■□□ 2.61
MSX1-201ENST00000382723 FAM151AQ8WW52 585 aa31.36■■■□□ 2.61
MSX1-201ENST00000382723 CSRNP1Q96S65 589 aa31.36■■■□□ 2.61
MSX1-201ENST00000382723 TCP11L1Q9NUJ3 509 aa31.36■■■□□ 2.61
MSX1-201ENST00000382723 ZDHHC9Q9Y397 364 aa31.36■■■□□ 2.61
MSX1-201ENST00000382723 CNTNAP1P78357 1384 aa31.36■■■□□ 2.61
MSX1-201ENST00000382723 SYT1P21579 422 aa31.36■■■□□ 2.61
MSX1-201ENST00000382723 RCSD1Q6JBY9 416 aa31.36■■■□□ 2.61
MSX1-201ENST00000382723 CATIPQ7Z7H3 387 aa31.36■■■□□ 2.61
MSX1-201ENST00000382723 NEDD1Q8NHV4 660 aa31.36■■■□□ 2.61
MSX1-201ENST00000382723 TNPO1Q92973 898 aaKnown RBP31.36■■■□□ 2.61
MSX1-201ENST00000382723 DNAJC18Q9H819 358 aa31.36■■■□□ 2.61
MSX1-201ENST00000382723 ATRNL1Q5VV63 1379 aa31.35■■■□□ 2.61
MSX1-201ENST00000382723 SBF1O95248 1867 aa31.35■■■□□ 2.61
MSX1-201ENST00000382723 H7C1D1 291 aa31.35■■■□□ 2.61
MSX1-201ENST00000382723 AKR1B1P15121 316 aa31.34■■■□□ 2.61
MSX1-201ENST00000382723 KIF4BQ2VIQ3 1234 aa31.34■■■□□ 2.61
MSX1-201ENST00000382723 CCDC178Q5BJE1 867 aa31.34■■■□□ 2.61
MSX1-201ENST00000382723 FKBP1CQ5VVH2 108 aa31.34■■■□□ 2.61
MSX1-201ENST00000382723 DICER1Q9UPY3 1922 aaKnown RBP31.34■■■□□ 2.61
MSX1-201ENST00000382723 DGKHQ86XP1 1220 aa31.34■■■□□ 2.61
MSX1-201ENST00000382723 FOXP4Q8IVH2 680 aaPredicted RBP31.34■■■□□ 2.61
MSX1-201ENST00000382723 FAM217BQ9NTX9 383 aaPredicted RBP31.34■■■□□ 2.61
MSX1-201ENST00000382723 STX8Q9UNK0 236 aa31.34■■■□□ 2.61
MSX1-201ENST00000382723 SCAF8Q9UPN6 1271 aaKnown RBP31.34■■■□□ 2.61
MSX1-201ENST00000382723 LARP1BQ659C4 914 aaKnown RBP31.33■■■□□ 2.61
MSX1-201ENST00000382723 FAM184AQ8NB25 1140 aa31.33■■■□□ 2.61
MSX1-201ENST00000382723 TMEM39BQ9GZU3 492 aa31.33■■■□□ 2.61
MSX1-201ENST00000382723 GPRC5DQ9NZD1 345 aa31.33■■■□□ 2.61
MSX1-201ENST00000382723 COL2A1P02458 1487 aaPredicted RBP31.32■■■□□ 2.6
MSX1-201ENST00000382723 STX6O43752 255 aa31.32■■■□□ 2.6
MSX1-201ENST00000382723 DDNO94850 711 aaPredicted RBP31.32■■■□□ 2.6
MSX1-201ENST00000382723 HMGN5P82970 282 aaKnown RBP31.32■■■□□ 2.6
MSX1-201ENST00000382723 RTN1Q16799 776 aa31.32■■■□□ 2.6
MSX1-201ENST00000382723 KAT14Q9H8E8 782 aa31.32■■■□□ 2.6
MSX1-201ENST00000382723 BRD1O95696 1058 aa31.32■■■□□ 2.6
MSX1-201ENST00000382723 FANCBQ8NB91 859 aa31.32■■■□□ 2.6
MSX1-201ENST00000382723 ASTN2O75129 1339 aaPredicted RBP31.31■■■□□ 2.6
MSX1-201ENST00000382723 MPHOSPH10O00566 681 aaKnown RBP31.31■■■□□ 2.6
MSX1-201ENST00000382723 CEP95Q96GE4 821 aa31.31■■■□□ 2.6
MSX1-201ENST00000382723 RCAN1P53805 252 aa31.3■■■□□ 2.6
MSX1-201ENST00000382723 CPLX2Q6PUV4 134 aaKnown RBP31.3■■■□□ 2.6
MSX1-201ENST00000382723 FAM83AQ86UY5 434 aa31.3■■■□□ 2.6
MSX1-201ENST00000382723 ANKS1AQ92625 1134 aa31.3■■■□□ 2.6
MSX1-201ENST00000382723 GNL3Q9BVP2 549 aaKnown RBP eCLIP31.3■■■□□ 2.6
MSX1-201ENST00000382723 SIPA1L1O43166 1804 aa31.29■■■□□ 2.6
MSX1-201ENST00000382723 WDR33Q9C0J8 1336 aaKnown RBP31.29■■■□□ 2.6
MSX1-201ENST00000382723 NID2Q14112 1375 aa31.29■■■□□ 2.6
MSX1-201ENST00000382723 SOCS7O14512 581 aa31.29■■■□□ 2.6
MSX1-201ENST00000382723 DDAH1O94760 285 aa31.29■■■□□ 2.6
MSX1-201ENST00000382723 PDCP20941 246 aa31.29■■■□□ 2.6
MSX1-201ENST00000382723 EPS15P42566 896 aa31.29■■■□□ 2.6
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms