RNA–Protein interactions for RNA: ENST00000378679.7

SHROOM1-203, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SHROOM1, Length 4,019 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-203ENST00000378679 ERCC4Q92889 916 aaPredicted RBP16.1■□□□□ 0.17
SHROOM1-203ENST00000378679 NEMFO60524 1076 aa16.1■□□□□ 0.17
SHROOM1-203ENST00000378679 FCHSD1Q86WN1 690 aa16.1■□□□□ 0.17
SHROOM1-203ENST00000378679 KDM6AO15550 1401 aaPredicted RBP16.1■□□□□ 0.17
SHROOM1-203ENST00000378679 CUTAO60888 179 aa16.1■□□□□ 0.17
SHROOM1-203ENST00000378679 GOLGA8HP0CJ92 632 aa16.1■□□□□ 0.17
SHROOM1-203ENST00000378679 ENOX2Q16206 610 aaKnown RBP16.1■□□□□ 0.17
SHROOM1-203ENST00000378679 LINC00116Q8NCU8 138 aa16.1■□□□□ 0.17
SHROOM1-203ENST00000378679 ZFP91Q96JP5 570 aaPredicted RBP16.1■□□□□ 0.17
SHROOM1-203ENST00000378679 PSMA7O14818 248 aa16.1■□□□□ 0.17
SHROOM1-203ENST00000378679 GPS2Q13227 327 aa16.1■□□□□ 0.17
SHROOM1-203ENST00000378679 CCDC40Q4G0X9 1142 aa16.1■□□□□ 0.17
SHROOM1-203ENST00000378679 TCERG1LQ5VWI1 586 aa16.1■□□□□ 0.17
SHROOM1-203ENST00000378679 LRRC27Q9C0I9 530 aa16.1■□□□□ 0.17
SHROOM1-203ENST00000378679 KIAA1328Q86T90 577 aa16.09■□□□□ 0.17
SHROOM1-203ENST00000378679 TICAM2Q86XR7 235 aa16.09■□□□□ 0.17
SHROOM1-203ENST00000378679 NOSTRINQ8IVI9 506 aa16.09■□□□□ 0.17
SHROOM1-203ENST00000378679 UBR1Q8IWV7 1749 aa16.09■□□□□ 0.17
SHROOM1-203ENST00000378679 KIF20BQ96Q89 1820 aa16.09■□□□□ 0.17
SHROOM1-203ENST00000378679 USP17L8P0C7I0 530 aa16.09■□□□□ 0.17
SHROOM1-203ENST00000378679 PCP11498 1178 aaKnown RBP16.09■□□□□ 0.17
SHROOM1-203ENST00000378679 GPT2Q8TD30 523 aa16.09■□□□□ 0.17
SHROOM1-203ENST00000378679 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.09■□□□□ 0.17
SHROOM1-203ENST00000378679 KLRF2D3W0D1 207 aa16.09■□□□□ 0.17
SHROOM1-203ENST00000378679 CHMP4BP1P59074 171 aa16.09■□□□□ 0.17
SHROOM1-203ENST00000378679 NOLC1Q14978 699 aaKnown RBP eCLIP16.09■□□□□ 0.17
SHROOM1-203ENST00000378679 PXDNLA1KZ92 1463 aa16.08■□□□□ 0.17
SHROOM1-203ENST00000378679 LZTS2Q9BRK4 669 aa16.08■□□□□ 0.17
SHROOM1-203ENST00000378679 ARHGEF10LQ9HCE6 1279 aa16.08■□□□□ 0.17
SHROOM1-203ENST00000378679 ZSCAN12O43309 604 aa16.08■□□□□ 0.16
SHROOM1-203ENST00000378679 MATR3P43243 847 aaKnown RBP eCLIP16.08■□□□□ 0.16
SHROOM1-203ENST00000378679 ODF2Q5BJF6 829 aa16.08■□□□□ 0.16
SHROOM1-203ENST00000378679 SEPT11Q9NVA2 429 aaKnown RBP16.08■□□□□ 0.16
SHROOM1-203ENST00000378679 USP42Q9H9J4 1324 aaKnown RBP16.08■□□□□ 0.16
SHROOM1-203ENST00000378679 LRRC47Q8N1G4 583 aaKnown RBP16.08■□□□□ 0.16
SHROOM1-203ENST00000378679 INCENPQ9NQS7 918 aa16.08■□□□□ 0.16
SHROOM1-203ENST00000378679 TBCAO75347 108 aaKnown RBP16.07■□□□□ 0.16
SHROOM1-203ENST00000378679 NONOQ15233 471 aaKnown RBP eCLIP16.07■□□□□ 0.166e-7■■■■□ 20.6
SHROOM1-203ENST00000378679 SH2D4AQ9H788 454 aa16.07■□□□□ 0.16
SHROOM1-203ENST00000378679 NR1I2O75469 434 aa16.07■□□□□ 0.16
SHROOM1-203ENST00000378679 NPR1P16066 1061 aa16.07■□□□□ 0.16
SHROOM1-203ENST00000378679 TXKP42681 527 aa16.07■□□□□ 0.16
SHROOM1-203ENST00000378679 ADALQ6DHV7 355 aa16.07■□□□□ 0.16
SHROOM1-203ENST00000378679 TNNT1P13805 278 aa16.07■□□□□ 0.16
SHROOM1-203ENST00000378679 TOB2Q14106 344 aaPredicted RBP16.07■□□□□ 0.16
SHROOM1-203ENST00000378679 RC3H1Q5TC82 1133 aaKnown RBP16.07■□□□□ 0.16
SHROOM1-203ENST00000378679 BBXQ8WY36 941 aaPredicted RBP16.07■□□□□ 0.16
SHROOM1-203ENST00000378679 FAM84BQ96KN1 310 aaPredicted RBP16.07■□□□□ 0.16
SHROOM1-203ENST00000378679 IL25Q9H293 177 aa16.07■□□□□ 0.16
SHROOM1-203ENST00000378679 IFNKQ9P0W0 207 aa16.07■□□□□ 0.16
SHROOM1-203ENST00000378679 CARMIL3Q8ND23 1372 aa16.06■□□□□ 0.16
SHROOM1-203ENST00000378679 CCNT1O60563 726 aaKnown RBP16.06■□□□□ 0.16
SHROOM1-203ENST00000378679 PLS1Q14651 629 aa16.06■□□□□ 0.16
SHROOM1-203ENST00000378679 SLC27A3Q5K4L6 730 aa16.06■□□□□ 0.16
SHROOM1-203ENST00000378679 SH2B2O14492 632 aaPredicted RBP16.06■□□□□ 0.16
SHROOM1-203ENST00000378679 SKILP12757 684 aa16.06■□□□□ 0.16
SHROOM1-203ENST00000378679 SPAG1Q07617 926 aa16.06■□□□□ 0.16
SHROOM1-203ENST00000378679 KIF18AQ8NI77 898 aa16.06■□□□□ 0.16
SHROOM1-203ENST00000378679 CLEC11AQ9Y240 323 aa16.06■□□□□ 0.16
SHROOM1-203ENST00000378679 REXO1Q8N1G1 1221 aaKnown RBP16.06■□□□□ 0.16
SHROOM1-203ENST00000378679 STAMQ92783 540 aa16.06■□□□□ 0.16
SHROOM1-203ENST00000378679 DYNLL2Q96FJ2 89 aa16.06■□□□□ 0.16
SHROOM1-203ENST00000378679 SCG2P13521 617 aa16.05■□□□□ 0.16
SHROOM1-203ENST00000378679 TTC14Q96N46 770 aa16.05■□□□□ 0.16
SHROOM1-203ENST00000378679 SMCO2A6NFE2 343 aa16.05■□□□□ 0.16
SHROOM1-203ENST00000378679 TCP10L2B9ZVM9 353 aa16.05■□□□□ 0.16
SHROOM1-203ENST00000378679 LIFRP42702 1097 aa16.05■□□□□ 0.16
SHROOM1-203ENST00000378679 MYL5Q02045 173 aa16.05■□□□□ 0.16
SHROOM1-203ENST00000378679 SF3B3Q15393 1217 aaKnown RBP16.05■□□□□ 0.16
SHROOM1-203ENST00000378679 TBC1D10CQ8IV04 446 aa16.05■□□□□ 0.16
SHROOM1-203ENST00000378679 GPKOWQ92917 476 aaPredicted RBP eCLIP16.05■□□□□ 0.16
SHROOM1-203ENST00000378679 AIFM3Q96NN9 605 aa16.05■□□□□ 0.16
SHROOM1-203ENST00000378679 CD209Q9NNX6 404 aa16.05■□□□□ 0.16
SHROOM1-203ENST00000378679 FSD2A1L4K1 749 aa16.05■□□□□ 0.16
SHROOM1-203ENST00000378679 KIF2AO00139 706 aaPredicted RBP16.05■□□□□ 0.16
SHROOM1-203ENST00000378679 SPA17Q15506 151 aa16.05■□□□□ 0.16
SHROOM1-203ENST00000378679 TDRD12Q587J7 1177 aaKnown RBP16.05■□□□□ 0.16
SHROOM1-203ENST00000378679 TEX35Q5T0J7 233 aa16.05■□□□□ 0.16
SHROOM1-203ENST00000378679 INTS5Q6P9B9 1019 aaKnown RBP16.05■□□□□ 0.16
SHROOM1-203ENST00000378679 KRT25Q7Z3Z0 450 aa16.05■□□□□ 0.16
SHROOM1-203ENST00000378679 FAM114A1Q8IWE2 563 aa16.05■□□□□ 0.16
SHROOM1-203ENST00000378679 UIMC1Q96RL1 719 aa16.05■□□□□ 0.16
SHROOM1-203ENST00000378679 CCDC66A2RUB6 948 aa16.04■□□□□ 0.16
SHROOM1-203ENST00000378679 POLR3GO15318 223 aaPredicted RBP16.04■□□□□ 0.16
SHROOM1-203ENST00000378679 CERKLQ49MI3 558 aaPredicted RBP16.04■□□□□ 0.16
SHROOM1-203ENST00000378679 SYCP3Q8IZU3 236 aa16.04■□□□□ 0.16
SHROOM1-203ENST00000378679 PCDHA7Q9UN72 937 aa16.04■□□□□ 0.16
SHROOM1-203ENST00000378679 C3P01024 1663 aa16.04■□□□□ 0.16
SHROOM1-203ENST00000378679 URI1O94763 535 aaPredicted RBP16.04■□□□□ 0.16
SHROOM1-203ENST00000378679 NTSR2O95665 410 aa16.04■□□□□ 0.16
SHROOM1-203ENST00000378679 ADCY7P51828 1080 aa16.04■□□□□ 0.16
SHROOM1-203ENST00000378679 CPXCR1Q8N123 301 aa16.04■□□□□ 0.16
SHROOM1-203ENST00000378679 FTOQ9C0B1 505 aaKnown RBP eCLIP16.04■□□□□ 0.16
SHROOM1-203ENST00000378679 TMX1Q9H3N1 280 aa16.04■□□□□ 0.16
SHROOM1-203ENST00000378679 CBX8Q9HC52 389 aa16.04■□□□□ 0.16
SHROOM1-203ENST00000378679 FRMPD2Q68DX3 1309 aaPredicted RBP16.04■□□□□ 0.16
SHROOM1-203ENST00000378679 DDAH1O94760 285 aa16.04■□□□□ 0.16
SHROOM1-203ENST00000378679 USH1GQ495M9 461 aa16.04■□□□□ 0.16
SHROOM1-203ENST00000378679 SERPINB13Q9UIV8 391 aa16.04■□□□□ 0.16
SHROOM1-203ENST00000378679 ADGRB2O60241 1585 aa16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms