RNA–Protein interactions for RNA: ENST00000373010.5

USP49-202, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 5 BASIC

Gene USP49, Length 2,446 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-202ENST00000373010 PNOCQ13519 176 aa21.58■■□□□ 1.05
USP49-202ENST00000373010 ARID5BQ14865 1188 aa21.58■■□□□ 1.05
USP49-202ENST00000373010 CATIPQ7Z7H3 387 aa21.58■■□□□ 1.05
USP49-202ENST00000373010 IQCA1Q86XH1 822 aa21.58■■□□□ 1.05
USP49-202ENST00000373010 RNF26Q9BY78 433 aaPredicted RBP21.58■■□□□ 1.05
USP49-202ENST00000373010 DDX52Q9Y2R4 599 aaKnown RBP eCLIP21.58■■□□□ 1.05
USP49-202ENST00000373010 FUT2Q10981 343 aa21.58■■□□□ 1.04
USP49-202ENST00000373010 PKN1Q16512 942 aa21.58■■□□□ 1.04
USP49-202ENST00000373010 TRAPPC3LQ5T215 181 aa21.58■■□□□ 1.04
USP49-202ENST00000373010 FAM196AQ6ZSG2 479 aa21.58■■□□□ 1.04
USP49-202ENST00000373010 BPIFA3Q9BQP9 254 aa21.58■■□□□ 1.04
USP49-202ENST00000373010 VPS54Q9P1Q0 977 aa21.58■■□□□ 1.04
USP49-202ENST00000373010 PCDHB6Q9Y5E3 794 aa21.58■■□□□ 1.04
USP49-202ENST00000373010 DLEC1Q9Y238 1755 aa21.58■■□□□ 1.04
USP49-202ENST00000373010 AKAP17AQ02040 695 aaKnown RBP21.57■■□□□ 1.04
USP49-202ENST00000373010 NFIXQ14938 502 aa21.57■■□□□ 1.04
USP49-202ENST00000373010 SLC4A8Q2Y0W8 1093 aa21.57■■□□□ 1.04
USP49-202ENST00000373010 LONRF3Q496Y0 759 aa21.57■■□□□ 1.04
USP49-202ENST00000373010 FAM47AQ5JRC9 791 aa21.57■■□□□ 1.04
USP49-202ENST00000373010 KCNH3Q9ULD8 1083 aa21.57■■□□□ 1.04
USP49-202ENST00000373010 RILPL1Q5EBL4 403 aa21.57■■□□□ 1.04
USP49-202ENST00000373010 ANKIB1Q9P2G1 1089 aa21.57■■□□□ 1.04
USP49-202ENST00000373010 LAMB1P07942 1786 aa21.56■■□□□ 1.04
USP49-202ENST00000373010 TROAPQ12815 778 aa21.56■■□□□ 1.04
USP49-202ENST00000373010 PPP2R5BQ15173 497 aa21.56■■□□□ 1.04
USP49-202ENST00000373010 CABP5Q9NP86 173 aa21.56■■□□□ 1.04
USP49-202ENST00000373010 TUBE1Q9UJT0 475 aa21.56■■□□□ 1.04
USP49-202ENST00000373010 FBXO2Q9UK22 296 aaPredicted RBP21.56■■□□□ 1.04
USP49-202ENST00000373010 V9GY48 417 aaPredicted RBP21.56■■□□□ 1.04
USP49-202ENST00000373010 MAST2Q6P0Q8 1798 aa21.56■■□□□ 1.04
USP49-202ENST00000373010 SBF2Q86WG5 1849 aa21.56■■□□□ 1.04
USP49-202ENST00000373010 FAM205CA6NFA0 338 aa21.56■■□□□ 1.04
USP49-202ENST00000373010 PCP11498 1178 aaKnown RBP21.56■■□□□ 1.04
USP49-202ENST00000373010 METTL16Q86W50 562 aaKnown RBP21.56■■□□□ 1.04
USP49-202ENST00000373010 DZIP1Q86YF9 867 aaKnown RBP21.56■■□□□ 1.04
USP49-202ENST00000373010 ATP8A2Q9NTI2 1148 aa21.56■■□□□ 1.04
USP49-202ENST00000373010 KRBA2Q6ZNG9 492 aa21.55■■□□□ 1.04
USP49-202ENST00000373010 ORC4O43929 436 aa21.55■■□□□ 1.04
USP49-202ENST00000373010 NCAPHQ15003 741 aa21.55■■□□□ 1.04
USP49-202ENST00000373010 FILIP1Q7Z7B0 1213 aa21.55■■□□□ 1.04
USP49-202ENST00000373010 GPR101Q96P66 508 aaPredicted RBP21.55■■□□□ 1.04
USP49-202ENST00000373010 KIAA1551Q9HCM1 1747 aa21.54■■□□□ 1.04
USP49-202ENST00000373010 FOXN1O15353 648 aa21.54■■□□□ 1.04
USP49-202ENST00000373010 PRPF3O43395 683 aaKnown RBP21.54■■□□□ 1.04
USP49-202ENST00000373010 PTPREP23469 700 aa21.54■■□□□ 1.04
USP49-202ENST00000373010 GRAPQ13588 217 aa21.54■■□□□ 1.04
USP49-202ENST00000373010 CNNM3Q8NE01 707 aa21.54■■□□□ 1.04
USP49-202ENST00000373010 GRAPLQ8TC17 118 aaPredicted RBP21.54■■□□□ 1.04
USP49-202ENST00000373010 RBM10P98175 930 aaKnown RBP21.54■■□□□ 1.04
USP49-202ENST00000373010 FOXP4Q8IVH2 680 aaPredicted RBP21.54■■□□□ 1.04
USP49-202ENST00000373010 LRRC8AQ8IWT6 810 aa21.54■■□□□ 1.04
USP49-202ENST00000373010 CNBD1Q8NA66 436 aa21.54■■□□□ 1.04
USP49-202ENST00000373010 GJD4Q96KN9 370 aaPredicted RBP21.54■■□□□ 1.04
USP49-202ENST00000373010 LRRC4BQ9NT99 713 aa21.54■■□□□ 1.04
USP49-202ENST00000373010 USP17L8P0C7I0 530 aa21.53■■□□□ 1.04
USP49-202ENST00000373010 EARS2Q5JPH6 523 aaKnown RBP21.53■■□□□ 1.04
USP49-202ENST00000373010 RBM28Q9NW13 759 aaKnown RBP21.53■■□□□ 1.04
USP49-202ENST00000373010 BAZ2BQ9UIF8 2168 aaKnown RBP21.53■■□□□ 1.04
USP49-202ENST00000373010 TMTC3Q6ZXV5 915 aa21.53■■□□□ 1.04
USP49-202ENST00000373010 MYRIPQ8NFW9 859 aa21.53■■□□□ 1.04
USP49-202ENST00000373010 PRIMPOLQ96LW4 560 aa21.53■■□□□ 1.04
USP49-202ENST00000373010 PHF20Q9BVI0 1012 aa21.53■■□□□ 1.04
USP49-202ENST00000373010 MCM9Q9NXL9 1143 aa21.53■■□□□ 1.04
USP49-202ENST00000373010 ARPP21Q9UBL0 812 aaPredicted RBP21.53■■□□□ 1.04
USP49-202ENST00000373010 SPATA31A6Q5VVP1 1343 aa21.52■■□□□ 1.04
USP49-202ENST00000373010 DDAH1O94760 285 aa21.52■■□□□ 1.04
USP49-202ENST00000373010 CALM1P0DP23 149 aa21.52■■□□□ 1.04
USP49-202ENST00000373010 CALM2P0DP24 149 aa21.52■■□□□ 1.04
USP49-202ENST00000373010 CALM3P0DP25 149 aa21.52■■□□□ 1.04
USP49-202ENST00000373010 GRIK5Q16478 980 aa21.52■■□□□ 1.04
USP49-202ENST00000373010 SBK1Q52WX2 424 aa21.52■■□□□ 1.04
USP49-202ENST00000373010 SPTY2D1Q68D10 685 aaPredicted RBP21.52■■□□□ 1.04
USP49-202ENST00000373010 XPO4Q9C0E2 1151 aaKnown RBP21.52■■□□□ 1.04
USP49-202ENST00000373010 IFNKQ9P0W0 207 aa21.52■■□□□ 1.04
USP49-202ENST00000373010 SMC2O95347 1197 aa21.51■■□□□ 1.03
USP49-202ENST00000373010 XBP1P17861 261 aa21.51■■□□□ 1.03
USP49-202ENST00000373010 PCDHA5Q9Y5H7 936 aa21.51■■□□□ 1.03
USP49-202ENST00000373010 KRT2P35908 639 aa21.51■■□□□ 1.03
USP49-202ENST00000373010 SRBD1Q8N5C6 995 aaKnown RBP21.51■■□□□ 1.03
USP49-202ENST00000373010 FAM13BQ9NYF5 915 aa21.51■■□□□ 1.03
USP49-202ENST00000373010 SMTNL1A8MU46 457 aa21.5■■□□□ 1.03
USP49-202ENST00000373010 LDHBP07195 334 aaKnown RBP21.5■■□□□ 1.03
USP49-202ENST00000373010 LMOD1P29536 600 aaPredicted RBP21.5■■□□□ 1.03
USP49-202ENST00000373010 NOM1Q5C9Z4 860 aaKnown RBP21.5■■□□□ 1.03
USP49-202ENST00000373010 MEX3CQ5U5Q3 659 aaKnown RBP21.5■■□□□ 1.03
USP49-202ENST00000373010 LEMD3Q9Y2U8 911 aa21.5■■□□□ 1.03
USP49-202ENST00000373010 CNTNAP5Q8WYK1 1306 aa21.5■■□□□ 1.03
USP49-202ENST00000373010 TSPY2A6NKD2 308 aa21.5■■□□□ 1.03
USP49-202ENST00000373010 DYNC1I1O14576 645 aa21.5■■□□□ 1.03
USP49-202ENST00000373010 POLR2DO15514 142 aaKnown RBP21.5■■□□□ 1.03
USP49-202ENST00000373010 MDM2Q00987 491 aaPredicted RBP21.5■■□□□ 1.03
USP49-202ENST00000373010 PDE4BQ07343 736 aa21.5■■□□□ 1.03
USP49-202ENST00000373010 DIXDC1Q155Q3 683 aa21.5■■□□□ 1.03
USP49-202ENST00000373010 PRR5LQ6MZQ0 368 aa21.5■■□□□ 1.03
USP49-202ENST00000373010 USP49Q70CQ1 688 aa21.5■■□□□ 1.03
USP49-202ENST00000373010 SH3RF3Q8TEJ3 882 aaPredicted RBP21.5■■□□□ 1.03
USP49-202ENST00000373010 SRPRBQ9Y5M8 271 aaKnown RBP21.5■■□□□ 1.03
USP49-202ENST00000373010 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP21.49■■□□□ 1.03
USP49-202ENST00000373010 TPM4P67936 248 aa21.49■■□□□ 1.03
USP49-202ENST00000373010 CTCFLQ8NI51 663 aaPredicted RBP21.49■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms