RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 GBP1P32455 592 aa4.61□□□□□ -1.67
USH2A-202ENST00000366942 PDE6CP51160 858 aa4.61□□□□□ -1.67
USH2A-202ENST00000366942 MFSD14BQ5SR56 506 aa4.61□□□□□ -1.67
USH2A-202ENST00000366942 B3GALNT2Q8NCR0 500 aa4.61□□□□□ -1.67
USH2A-202ENST00000366942 ARL8AQ96BM9 186 aa4.61□□□□□ -1.67
USH2A-202ENST00000366942 GZF1Q9H116 711 aaPredicted RBP4.61□□□□□ -1.67
USH2A-202ENST00000366942 IGSF1Q8N6C5 1336 aa4.6□□□□□ -1.67
USH2A-202ENST00000366942 IFIT3O14879 490 aaKnown RBP4.6□□□□□ -1.67
USH2A-202ENST00000366942 INPP4BO15327 924 aa4.6□□□□□ -1.67
USH2A-202ENST00000366942 RAD17O75943 681 aa4.6□□□□□ -1.67
USH2A-202ENST00000366942 CABYRO75952 493 aa4.6□□□□□ -1.67
USH2A-202ENST00000366942 ZAP70P43403 619 aa4.6□□□□□ -1.67
USH2A-202ENST00000366942 WDR44Q5JSH3 913 aa4.6□□□□□ -1.67
USH2A-202ENST00000366942 USP50Q70EL3 339 aaPredicted RBP4.6□□□□□ -1.67
USH2A-202ENST00000366942 TRMT1LQ7Z2T5 733 aaKnown RBP4.6□□□□□ -1.67
USH2A-202ENST00000366942 TBC1D19Q8N5T2 526 aa4.6□□□□□ -1.67
USH2A-202ENST00000366942 GLMNQ92990 594 aa4.6□□□□□ -1.67
USH2A-202ENST00000366942 KAT6BQ8WYB5 2073 aa4.6□□□□□ -1.67
USH2A-202ENST00000366942 DNMBPQ6XZF7 1577 aa4.6□□□□□ -1.67
USH2A-202ENST00000366942 PIK3C2GO75747 1445 aa4.6□□□□□ -1.67
USH2A-202ENST00000366942 TMEM265A0A087WTH1 108 aa4.6□□□□□ -1.67
USH2A-202ENST00000366942 GOLGA6CA6NDK9 693 aa4.6□□□□□ -1.67
USH2A-202ENST00000366942 GOLGA6BA6NDN3 693 aa4.6□□□□□ -1.67
USH2A-202ENST00000366942 SPDYE16A6NNV3 312 aaPredicted RBP4.6□□□□□ -1.67
USH2A-202ENST00000366942 TCP10L2B9ZVM9 353 aa4.6□□□□□ -1.67
USH2A-202ENST00000366942 GOLGA6DP0CG33 693 aa4.6□□□□□ -1.67
USH2A-202ENST00000366942 ZNF165P49910 485 aa4.6□□□□□ -1.67
USH2A-202ENST00000366942 SRSF11Q05519 484 aaKnown RBP4.6□□□□□ -1.67
USH2A-202ENST00000366942 SPDYE2Q495Y8 402 aa4.6□□□□□ -1.67
USH2A-202ENST00000366942 MEI1Q5TIA1 1274 aa4.6□□□□□ -1.67
USH2A-202ENST00000366942 LARP1BQ659C4 914 aaKnown RBP4.6□□□□□ -1.67
USH2A-202ENST00000366942 KIAA0825Q8IV33 1275 aa4.6□□□□□ -1.67
USH2A-202ENST00000366942 STK11IPQ8N1F8 1099 aa4.6□□□□□ -1.67
USH2A-202ENST00000366942 METTL13Q8N6R0 699 aa4.6□□□□□ -1.67
USH2A-202ENST00000366942 BRIP1Q9BX63 1249 aa4.6□□□□□ -1.67
USH2A-202ENST00000366942 GOLGA6AQ9NYA3 693 aa4.6□□□□□ -1.67
USH2A-202ENST00000366942 USP18Q9UMW8 372 aa4.6□□□□□ -1.67
USH2A-202ENST00000366942 PPP2R3BQ9Y5P8 575 aa4.6□□□□□ -1.67
USH2A-202ENST00000366942 YTHDC2Q9H6S0 1430 aaKnown RBP4.6□□□□□ -1.67
USH2A-202ENST00000366942 CAMSAP2Q08AD1 1489 aa4.6□□□□□ -1.67
USH2A-202ENST00000366942 PRXQ9BXM0 1461 aa4.6□□□□□ -1.67
USH2A-202ENST00000366942 TRAF5O00463 557 aa4.6□□□□□ -1.67
USH2A-202ENST00000366942 XYLBO75191 536 aa4.6□□□□□ -1.67
USH2A-202ENST00000366942 PPARGP37231 505 aaPredicted RBP4.6□□□□□ -1.67
USH2A-202ENST00000366942 FKBP15Q5T1M5 1219 aa4.6□□□□□ -1.67
USH2A-202ENST00000366942 ZC3H15Q8WU90 426 aaKnown RBP4.6□□□□□ -1.67
USH2A-202ENST00000366942 SOCS4Q8WXH5 440 aa4.6□□□□□ -1.67
USH2A-202ENST00000366942 COA1Q9GZY4 146 aa4.6□□□□□ -1.67
USH2A-202ENST00000366942 ACBD3Q9H3P7 528 aa4.6□□□□□ -1.67
USH2A-202ENST00000366942 DDX21Q9NR30 783 aaKnown RBP eCLIP4.6□□□□□ -1.67
USH2A-202ENST00000366942 UTP6Q9NYH9 597 aaKnown RBP4.6□□□□□ -1.67
USH2A-202ENST00000366942 FAM184BQ9ULE4 1060 aa4.6□□□□□ -1.67
USH2A-202ENST00000366942 KANSL1LA0AUZ9 987 aa4.6□□□□□ -1.67
USH2A-202ENST00000366942 GRXCR2A6NFK2 248 aa4.6□□□□□ -1.67
USH2A-202ENST00000366942 CAPN8A6NHC0 703 aa4.6□□□□□ -1.67
USH2A-202ENST00000366942 SEMA3EO15041 775 aa4.6□□□□□ -1.67
USH2A-202ENST00000366942 FOXD2O60548 495 aaPredicted RBP4.6□□□□□ -1.67
USH2A-202ENST00000366942 FAM13AO94988 1023 aa4.6□□□□□ -1.67
USH2A-202ENST00000366942 PARNO95453 639 aaKnown RBP4.6□□□□□ -1.67
USH2A-202ENST00000366942 HSPA6P17066 643 aa4.6□□□□□ -1.67
USH2A-202ENST00000366942 GPR158Q5T848 1215 aa4.6□□□□□ -1.67
USH2A-202ENST00000366942 TAF4BQ92750 862 aa4.6□□□□□ -1.67
USH2A-202ENST00000366942 KIF12Q96FN5 646 aa4.6□□□□□ -1.67
USH2A-202ENST00000366942 FAM167AQ96KS9 214 aa4.6□□□□□ -1.67
USH2A-202ENST00000366942 SUN1O94901 812 aa4.6□□□□□ -1.67
USH2A-202ENST00000366942 MLYCDO95822 493 aa4.6□□□□□ -1.67
USH2A-202ENST00000366942 MAPK4P31152 587 aa4.6□□□□□ -1.67
USH2A-202ENST00000366942 SP3Q02447 781 aa4.6□□□□□ -1.67
USH2A-202ENST00000366942 TTLL4Q14679 1199 aa4.6□□□□□ -1.67
USH2A-202ENST00000366942 CCNG2Q16589 344 aa4.6□□□□□ -1.67
USH2A-202ENST00000366942 DEFB132Q7Z7B7 95 aa4.6□□□□□ -1.67
USH2A-202ENST00000366942 FAM160B2Q86V87 743 aa4.6□□□□□ -1.67
USH2A-202ENST00000366942 OOSP2Q86WS3 158 aa4.6□□□□□ -1.67
USH2A-202ENST00000366942 ZNF397Q8NF99 534 aaPredicted RBP4.6□□□□□ -1.67
USH2A-202ENST00000366942 DEPTORQ8TB45 409 aa4.6□□□□□ -1.67
USH2A-202ENST00000366942 HPS3Q969F9 1004 aa4.6□□□□□ -1.67
USH2A-202ENST00000366942 LZTS2Q9BRK4 669 aa4.6□□□□□ -1.67
USH2A-202ENST00000366942 DDX23Q9BUQ8 820 aaKnown RBP4.6□□□□□ -1.67
USH2A-202ENST00000366942 SPINK5Q9NQ38 1064 aaPredicted RBP4.6□□□□□ -1.67
USH2A-202ENST00000366942 GINM1Q9NU53 330 aa4.6□□□□□ -1.67
USH2A-202ENST00000366942 SOS1Q07889 1333 aaPredicted RBP4.6□□□□□ -1.67
USH2A-202ENST00000366942 ERBB4Q15303 1308 aa4.6□□□□□ -1.67
USH2A-202ENST00000366942 PYGBP11216 843 aa4.59□□□□□ -1.67
USH2A-202ENST00000366942 UBA7P41226 1012 aa4.59□□□□□ -1.67
USH2A-202ENST00000366942 ALDH1A3P47895 512 aa4.59□□□□□ -1.67
USH2A-202ENST00000366942 PHKG1Q16816 387 aa4.59□□□□□ -1.67
USH2A-202ENST00000366942 RNF187Q5TA31 235 aaPredicted RBP4.59□□□□□ -1.67
USH2A-202ENST00000366942 BROXQ5VW32 411 aa4.59□□□□□ -1.67
USH2A-202ENST00000366942 TMED8Q6PL24 325 aaPredicted RBP4.59□□□□□ -1.67
USH2A-202ENST00000366942 TRIM62Q9BVG3 475 aa4.59□□□□□ -1.67
USH2A-202ENST00000366942 BABAM1Q9NWV8 329 aa4.59□□□□□ -1.67
USH2A-202ENST00000366942 MOSPD1Q9UJG1 213 aa4.59□□□□□ -1.67
USH2A-202ENST00000366942 USTQ9Y2C2 406 aa4.59□□□□□ -1.67
USH2A-202ENST00000366942 EMSYQ7Z589 1322 aa4.59□□□□□ -1.67
USH2A-202ENST00000366942 TRIM75PA6NK02 468 aa4.59□□□□□ -1.67
USH2A-202ENST00000366942 ZYXQ15942 572 aaKnown RBP4.59□□□□□ -1.67
USH2A-202ENST00000366942 TBC1D10BQ4KMP7 808 aaPredicted RBP4.59□□□□□ -1.67
USH2A-202ENST00000366942 RGMBQ6NW40 437 aa4.59□□□□□ -1.67
USH2A-202ENST00000366942 VPS8Q8N3P4 1428 aa4.59□□□□□ -1.67
USH2A-202ENST00000366942 FBXO22Q8NEZ5 403 aa4.59□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 73.1 ms