RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 SPECC1Q5M775 1068 aa23.96■■□□□ 1.43
CCDC88B-203ENST00000359902 CATIPQ7Z7H3 387 aa23.96■■□□□ 1.43
CCDC88B-203ENST00000359902 IQCA1Q86XH1 822 aa23.96■■□□□ 1.43
CCDC88B-203ENST00000359902 FOXP4Q8IVH2 680 aaPredicted RBP23.96■■□□□ 1.43
CCDC88B-203ENST00000359902 ARHGEF1Q92888 912 aaKnown RBP23.96■■□□□ 1.43
CCDC88B-203ENST00000359902 AATFQ9NY61 560 aaKnown RBP eCLIP23.96■■□□□ 1.43
CCDC88B-203ENST00000359902 EVX2Q03828 476 aa23.95■■□□□ 1.43
CCDC88B-203ENST00000359902 GRIN1Q05586 938 aa23.95■■□□□ 1.43
CCDC88B-203ENST00000359902 CNNM3Q8NE01 707 aa23.95■■□□□ 1.43
CCDC88B-203ENST00000359902 CCNL1Q9UK58 526 aaPredicted RBP23.95■■□□□ 1.43
CCDC88B-203ENST00000359902 DDX52Q9Y2R4 599 aaKnown RBP eCLIP23.95■■□□□ 1.43
CCDC88B-203ENST00000359902 BTAF1O14981 1849 aa23.95■■□□□ 1.42
CCDC88B-203ENST00000359902 PRDX5P30044 214 aa23.95■■□□□ 1.42
CCDC88B-203ENST00000359902 TPM4P67936 248 aa23.95■■□□□ 1.42
CCDC88B-203ENST00000359902 AKAP17AQ02040 695 aaKnown RBP23.95■■□□□ 1.42
CCDC88B-203ENST00000359902 TROAPQ12815 778 aa23.95■■□□□ 1.42
CCDC88B-203ENST00000359902 TXNRD3Q86VQ6 643 aa23.95■■□□□ 1.42
CCDC88B-203ENST00000359902 ELOA2Q8IYF1 753 aaPredicted RBP23.95■■□□□ 1.42
CCDC88B-203ENST00000359902 FNBP4Q8N3X1 1017 aaPredicted RBP23.95■■□□□ 1.42
CCDC88B-203ENST00000359902 XPO4Q9C0E2 1151 aaKnown RBP23.95■■□□□ 1.42
CCDC88B-203ENST00000359902 DCP1AQ9NPI6 582 aaPredicted RBP23.95■■□□□ 1.42
CCDC88B-203ENST00000359902 IFNKQ9P0W0 207 aa23.95■■□□□ 1.42
CCDC88B-203ENST00000359902 PRPF3O43395 683 aaKnown RBP23.94■■□□□ 1.42
CCDC88B-203ENST00000359902 CHAF1AQ13111 956 aaPredicted RBP23.94■■□□□ 1.42
CCDC88B-203ENST00000359902 CRNKL1Q9BZJ0 848 aaKnown RBP23.94■■□□□ 1.42
CCDC88B-203ENST00000359902 CABP5Q9NP86 173 aa23.94■■□□□ 1.42
CCDC88B-203ENST00000359902 MDM2Q00987 491 aaPredicted RBP23.94■■□□□ 1.42
CCDC88B-203ENST00000359902 OSBPL5Q9H0X9 879 aaPredicted RBP23.94■■□□□ 1.42
CCDC88B-203ENST00000359902 HSD3B7Q9H2F3 369 aa23.94■■□□□ 1.42
CCDC88B-203ENST00000359902 PDCL3Q9H2J4 239 aa23.94■■□□□ 1.42
CCDC88B-203ENST00000359902 IMPACTQ9P2X3 320 aa23.94■■□□□ 1.42
CCDC88B-203ENST00000359902 ORC4O43929 436 aa23.93■■□□□ 1.42
CCDC88B-203ENST00000359902 PLEKHA8P1O95397 391 aa23.93■■□□□ 1.42
CCDC88B-203ENST00000359902 SKILP12757 684 aa23.93■■□□□ 1.42
CCDC88B-203ENST00000359902 FAM182BQ5T319 152 aa23.93■■□□□ 1.42
CCDC88B-203ENST00000359902 RBM28Q9NW13 759 aaKnown RBP23.93■■□□□ 1.42
CCDC88B-203ENST00000359902 VPS54Q9P1Q0 977 aa23.93■■□□□ 1.42
CCDC88B-203ENST00000359902 PCDHA5Q9Y5H7 936 aa23.93■■□□□ 1.42
CCDC88B-203ENST00000359902 V9GY48 417 aaPredicted RBP23.93■■□□□ 1.42
CCDC88B-203ENST00000359902 CCZ1BP86790 482 aa23.93■■□□□ 1.42
CCDC88B-203ENST00000359902 CCZ1P86791 482 aaPredicted RBP23.93■■□□□ 1.42
CCDC88B-203ENST00000359902 ZNF579Q8NAF0 562 aaKnown RBP23.93■■□□□ 1.42
CCDC88B-203ENST00000359902 C16orf45Q96MC5 204 aaPredicted RBP23.93■■□□□ 1.42
CCDC88B-203ENST00000359902 ATP8A2Q9NTI2 1148 aa23.93■■□□□ 1.42
CCDC88B-203ENST00000359902 IRS2Q9Y4H2 1338 aa23.93■■□□□ 1.42
CCDC88B-203ENST00000359902 MYH6P13533 1939 aa23.93■■□□□ 1.42
CCDC88B-203ENST00000359902 MYH13Q9UKX3 1938 aa23.92■■□□□ 1.42
CCDC88B-203ENST00000359902 SMC2O95347 1197 aa23.92■■□□□ 1.42
CCDC88B-203ENST00000359902 CALM1P0DP23 149 aa23.92■■□□□ 1.42
CCDC88B-203ENST00000359902 CALM2P0DP24 149 aa23.92■■□□□ 1.42
CCDC88B-203ENST00000359902 CALM3P0DP25 149 aa23.92■■□□□ 1.42
CCDC88B-203ENST00000359902 XBP1P17861 261 aa23.92■■□□□ 1.42
CCDC88B-203ENST00000359902 GSDMDP57764 484 aa23.92■■□□□ 1.42
CCDC88B-203ENST00000359902 PHF20Q9BVI0 1012 aa23.92■■□□□ 1.42
CCDC88B-203ENST00000359902 SRPRBQ9Y5M8 271 aaKnown RBP23.92■■□□□ 1.42
CCDC88B-203ENST00000359902 hCG_1642624A0A1W2PR95 340 aa23.92■■□□□ 1.42
CCDC88B-203ENST00000359902 FOXN1O15353 648 aa23.92■■□□□ 1.42
CCDC88B-203ENST00000359902 LMOD1P29536 600 aaPredicted RBP23.92■■□□□ 1.42
CCDC88B-203ENST00000359902 CEP131Q9UPN4 1083 aa23.92■■□□□ 1.42
CCDC88B-203ENST00000359902 RIOK3O14730 519 aaKnown RBP23.91■■□□□ 1.42
CCDC88B-203ENST00000359902 DDAH1O94760 285 aa23.91■■□□□ 1.42
CCDC88B-203ENST00000359902 ATP2B1P20020 1258 aa23.91■■□□□ 1.42
CCDC88B-203ENST00000359902 TSC1Q92574 1164 aa23.91■■□□□ 1.42
CCDC88B-203ENST00000359902 ZBTB22O15209 634 aa23.9■■□□□ 1.42
CCDC88B-203ENST00000359902 JAG2Q9Y219 1238 aa23.9■■□□□ 1.42
CCDC88B-203ENST00000359902 DLEC1Q9Y238 1755 aa23.9■■□□□ 1.42
CCDC88B-203ENST00000359902 NMT2O60551 498 aa23.9■■□□□ 1.42
CCDC88B-203ENST00000359902 CYP2D6P10635 497 aa23.9■■□□□ 1.42
CCDC88B-203ENST00000359902 TPD52L1Q16890 204 aaPredicted RBP23.9■■□□□ 1.42
CCDC88B-203ENST00000359902 SBK1Q52WX2 424 aa23.9■■□□□ 1.42
CCDC88B-203ENST00000359902 TMED8Q6PL24 325 aaPredicted RBP23.9■■□□□ 1.42
CCDC88B-203ENST00000359902 TMTC3Q6ZXV5 915 aa23.9■■□□□ 1.42
CCDC88B-203ENST00000359902 FAM205CA6NFA0 338 aa23.89■■□□□ 1.42
CCDC88B-203ENST00000359902 POLR2DO15514 142 aaKnown RBP23.89■■□□□ 1.42
CCDC88B-203ENST00000359902 TNNT1P13805 278 aa23.89■■□□□ 1.42
CCDC88B-203ENST00000359902 BMP6P22004 513 aa23.89■■□□□ 1.42
CCDC88B-203ENST00000359902 FANCCQ00597 558 aa23.89■■□□□ 1.42
CCDC88B-203ENST00000359902 MYL5Q02045 173 aa23.89■■□□□ 1.42
CCDC88B-203ENST00000359902 ATP1A3P13637 1013 aa23.89■■□□□ 1.41
CCDC88B-203ENST00000359902 KRT2P35908 639 aa23.89■■□□□ 1.41
CCDC88B-203ENST00000359902 EARS2Q5JPH6 523 aaKnown RBP23.89■■□□□ 1.41
CCDC88B-203ENST00000359902 FAM47AQ5JRC9 791 aa23.89■■□□□ 1.41
CCDC88B-203ENST00000359902 HOOK1Q9UJC3 728 aaKnown RBP23.89■■□□□ 1.41
CCDC88B-203ENST00000359902 NHSQ6T4R5 1651 aa23.89■■□□□ 1.41
CCDC88B-203ENST00000359902 OLFM4Q6UX06 510 aa23.88■■□□□ 1.41
CCDC88B-203ENST00000359902 ARPP21Q9UBL0 812 aaPredicted RBP23.88■■□□□ 1.41
CCDC88B-203ENST00000359902 SERTAD1Q9UHV2 236 aa23.88■■□□□ 1.41
CCDC88B-203ENST00000359902 USP21Q9UK80 565 aa23.88■■□□□ 1.41
CCDC88B-203ENST00000359902 MORC2Q9Y6X9 1032 aaPredicted RBP23.88■■□□□ 1.41
CCDC88B-203ENST00000359902 TMC6Q7Z403 805 aa23.88■■□□□ 1.41
CCDC88B-203ENST00000359902 MAP7D2Q96T17 732 aa23.88■■□□□ 1.41
CCDC88B-203ENST00000359902 CSRNP2Q9H175 543 aa23.88■■□□□ 1.41
CCDC88B-203ENST00000359902 TRIM75PA6NK02 468 aa23.87■■□□□ 1.41
CCDC88B-203ENST00000359902 USP27XA6NNY8 438 aa23.87■■□□□ 1.41
CCDC88B-203ENST00000359902 POSTNQ15063 836 aa23.87■■□□□ 1.41
CCDC88B-203ENST00000359902 SPTY2D1Q68D10 685 aaPredicted RBP23.87■■□□□ 1.41
CCDC88B-203ENST00000359902 SRBD1Q8N5C6 995 aaKnown RBP23.87■■□□□ 1.41
CCDC88B-203ENST00000359902 NPHP1O15259 732 aa23.87■■□□□ 1.41
CCDC88B-203ENST00000359902 RFC4P35249 363 aa23.87■■□□□ 1.41
CCDC88B-203ENST00000359902 NT5DC1Q5TFE4 455 aa23.87■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 114.2 ms