RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 SERPINB13Q9UIV8 391 aa21.86■■□□□ 1.09
CLN3-204ENST00000357857 ZDHHC9Q9Y397 364 aa21.86■■□□□ 1.09
CLN3-204ENST00000357857 GJA3Q9Y6H8 435 aa21.86■■□□□ 1.09
CLN3-204ENST00000357857 COL2A1P02458 1487 aaPredicted RBP21.86■■□□□ 1.09
CLN3-204ENST00000357857 NID2Q14112 1375 aa21.86■■□□□ 1.09
CLN3-204ENST00000357857 PTPDC1A2A3K4 754 aa21.86■■□□□ 1.09
CLN3-204ENST00000357857 GOLGA8AA7E2F4 631 aa21.86■■□□□ 1.09
CLN3-204ENST00000357857 BRD1O95696 1058 aa21.86■■□□□ 1.09
CLN3-204ENST00000357857 SYT1P21579 422 aa21.86■■□□□ 1.09
CLN3-204ENST00000357857 RCAN1P53805 252 aa21.86■■□□□ 1.09
CLN3-204ENST00000357857 HMGN5P82970 282 aaKnown RBP21.86■■□□□ 1.09
CLN3-204ENST00000357857 CCDC178Q5BJE1 867 aa21.86■■□□□ 1.09
CLN3-204ENST00000357857 ZNF654Q8IZM8 581 aa21.86■■□□□ 1.09
CLN3-204ENST00000357857 MYL10Q9BUA6 226 aa21.86■■□□□ 1.09
CLN3-204ENST00000357857 EHD4Q9H223 541 aa21.86■■□□□ 1.09
CLN3-204ENST00000357857 WDR33Q9C0J8 1336 aaKnown RBP21.85■■□□□ 1.09
CLN3-204ENST00000357857 ZNF541Q9H0D2 1346 aa21.85■■□□□ 1.09
CLN3-204ENST00000357857 CPLX1O14810 134 aa21.85■■□□□ 1.09
CLN3-204ENST00000357857 NMT2O60551 498 aa21.85■■□□□ 1.09
CLN3-204ENST00000357857 RXRAP19793 462 aa21.85■■□□□ 1.09
CLN3-204ENST00000357857 PDCP20941 246 aa21.85■■□□□ 1.09
CLN3-204ENST00000357857 GMPSP49915 693 aaPredicted RBP21.85■■□□□ 1.09
CLN3-204ENST00000357857 ZNF280AP59817 542 aaPredicted RBP21.85■■□□□ 1.09
CLN3-204ENST00000357857 SPDYE2Q495Y8 402 aa21.85■■□□□ 1.09
CLN3-204ENST00000357857 DPF2Q92785 391 aa21.85■■□□□ 1.09
CLN3-204ENST00000357857 ZBED3Q96IU2 234 aaPredicted RBP21.85■■□□□ 1.09
CLN3-204ENST00000357857 MYOZ2Q9NPC6 264 aa21.85■■□□□ 1.09
CLN3-204ENST00000357857 TCP11L1Q9NUJ3 509 aa21.85■■□□□ 1.09
CLN3-204ENST00000357857 CLRN2A0PK11 232 aa21.84■■□□□ 1.09
CLN3-204ENST00000357857 STX6O43752 255 aa21.84■■□□□ 1.09
CLN3-204ENST00000357857 NFKBIBQ15653 356 aa21.84■■□□□ 1.09
CLN3-204ENST00000357857 ZSCAN29Q8IWY8 852 aaPredicted RBP21.84■■□□□ 1.09
CLN3-204ENST00000357857 DDX11Q96FC9 970 aa21.84■■□□□ 1.09
CLN3-204ENST00000357857 ATRNL1Q5VV63 1379 aa21.84■■□□□ 1.09
CLN3-204ENST00000357857 SRCAPQ6ZRS2 3230 aa21.83■■□□□ 1.09
CLN3-204ENST00000357857 SHTN1A0MZ66 631 aa21.83■■□□□ 1.09
CLN3-204ENST00000357857 DDTLA6NHG4 134 aaPredicted RBP21.83■■□□□ 1.09
CLN3-204ENST00000357857 MYO1BO43795 1136 aa21.83■■□□□ 1.09
CLN3-204ENST00000357857 YBX3P16989 372 aaKnown RBP eCLIP21.83■■□□□ 1.09
CLN3-204ENST00000357857 LARP1BQ659C4 914 aaKnown RBP21.83■■□□□ 1.09
CLN3-204ENST00000357857 SH3BP5LQ7L8J4 393 aa21.83■■□□□ 1.09
CLN3-204ENST00000357857 CCDC144CPQ8IYA2 1237 aa21.83■■□□□ 1.09
CLN3-204ENST00000357857 IL17RBQ9NRM6 502 aa21.83■■□□□ 1.09
CLN3-204ENST00000357857 PI4KBQ9UBF8 816 aa21.83■■□□□ 1.09
CLN3-204ENST00000357857 PDIA4P13667 645 aaKnown RBP21.83■■□□□ 1.08
CLN3-204ENST00000357857 CPLX2Q6PUV4 134 aaKnown RBP21.83■■□□□ 1.08
CLN3-204ENST00000357857 CATIPQ7Z7H3 387 aa21.83■■□□□ 1.08
CLN3-204ENST00000357857 FAM184AQ8NB25 1140 aa21.83■■□□□ 1.08
CLN3-204ENST00000357857 NEDD1Q8NHV4 660 aa21.83■■□□□ 1.08
CLN3-204ENST00000357857 KIF3AQ9Y496 699 aa21.83■■□□□ 1.08
CLN3-204ENST00000357857 TCP10L2B9ZVM9 353 aa21.82■■□□□ 1.08
CLN3-204ENST00000357857 CDC27P30260 824 aa21.82■■□□□ 1.08
CLN3-204ENST00000357857 ADD1P35611 737 aaKnown RBP21.82■■□□□ 1.08
CLN3-204ENST00000357857 RTN1Q16799 776 aa21.82■■□□□ 1.08
CLN3-204ENST00000357857 FOXD4L5Q5VV16 416 aaPredicted RBP21.82■■□□□ 1.08
CLN3-204ENST00000357857 FKBP1CQ5VVH2 108 aa21.82■■□□□ 1.08
CLN3-204ENST00000357857 RCSD1Q6JBY9 416 aa21.82■■□□□ 1.08
CLN3-204ENST00000357857 DGKHQ86XP1 1220 aa21.82■■□□□ 1.08
CLN3-204ENST00000357857 CRACR2BQ8N4Y2 399 aaPredicted RBP21.82■■□□□ 1.08
CLN3-204ENST00000357857 NUP133Q8WUM0 1156 aa21.82■■□□□ 1.08
CLN3-204ENST00000357857 FOXD4L4Q8WXT5 416 aaPredicted RBP21.82■■□□□ 1.08
CLN3-204ENST00000357857 ANKS1AQ92625 1134 aa21.82■■□□□ 1.08
CLN3-204ENST00000357857 TAOK2Q9UL54 1235 aa21.82■■□□□ 1.08
CLN3-204ENST00000357857 WNT10BO00744 389 aa21.81■■□□□ 1.08
CLN3-204ENST00000357857 CDKL5O76039 1030 aa21.81■■□□□ 1.08
CLN3-204ENST00000357857 MICALL2Q8IY33 904 aa21.81■■□□□ 1.08
CLN3-204ENST00000357857 VEZTQ9HBM0 779 aa21.81■■□□□ 1.08
CLN3-204ENST00000357857 FAM217BQ9NTX9 383 aaPredicted RBP21.81■■□□□ 1.08
CLN3-204ENST00000357857 CNOT7Q9UIV1 285 aaKnown RBP21.81■■□□□ 1.08
CLN3-204ENST00000357857 PLIN4Q96Q06 1357 aa21.81■■□□□ 1.08
CLN3-204ENST00000357857 DDAH1O94760 285 aa21.8■■□□□ 1.08
CLN3-204ENST00000357857 SHMT1P34896 483 aa21.8■■□□□ 1.08
CLN3-204ENST00000357857 NBPF9Q3BBW0 867 aa21.8■■□□□ 1.08
CLN3-204ENST00000357857 FAM151AQ8WW52 585 aa21.8■■□□□ 1.08
CLN3-204ENST00000357857 GBP4Q96PP9 640 aa21.8■■□□□ 1.08
CLN3-204ENST00000357857 GREB1LQ9C091 1923 aaPredicted RBP21.8■■□□□ 1.08
CLN3-204ENST00000357857 CCDC196A0A1B0GTZ2 297 aa21.8■■□□□ 1.08
CLN3-204ENST00000357857 CALM1P0DP23 149 aa21.8■■□□□ 1.08
CLN3-204ENST00000357857 CALM2P0DP24 149 aa21.8■■□□□ 1.08
CLN3-204ENST00000357857 CALM3P0DP25 149 aa21.8■■□□□ 1.08
CLN3-204ENST00000357857 ZSCAN22P10073 491 aaPredicted RBP21.8■■□□□ 1.08
CLN3-204ENST00000357857 PPP2R5BQ15173 497 aa21.8■■□□□ 1.08
CLN3-204ENST00000357857 FOXP4Q8IVH2 680 aaPredicted RBP21.8■■□□□ 1.08
CLN3-204ENST00000357857 FANCBQ8NB91 859 aa21.8■■□□□ 1.08
CLN3-204ENST00000357857 TRIM34Q9BYJ4 488 aa21.8■■□□□ 1.08
CLN3-204ENST00000357857 KAT14Q9H8E8 782 aa21.8■■□□□ 1.08
CLN3-204ENST00000357857 MTMR6Q9Y217 621 aa21.8■■□□□ 1.08
CLN3-204ENST00000357857 CLEC17AQ6ZS10 378 aa21.79■■□□□ 1.08
CLN3-204ENST00000357857 CNTNAP1P78357 1384 aa21.79■■□□□ 1.08
CLN3-204ENST00000357857 MYH6P13533 1939 aa21.79■■□□□ 1.08
CLN3-204ENST00000357857 VPS37CA5D8V6 355 aaPredicted RBP21.78■■□□□ 1.08
CLN3-204ENST00000357857 PPFIA3O75145 1194 aa21.78■■□□□ 1.08
CLN3-204ENST00000357857 AKR1B1P15121 316 aa21.78■■□□□ 1.08
CLN3-204ENST00000357857 TROAPQ12815 778 aa21.78■■□□□ 1.08
CLN3-204ENST00000357857 NTRK3Q16288 839 aa21.78■■□□□ 1.08
CLN3-204ENST00000357857 RBM26Q5T8P6 1007 aaKnown RBP21.78■■□□□ 1.08
CLN3-204ENST00000357857 GPC2Q8N158 579 aa21.78■■□□□ 1.08
CLN3-204ENST00000357857 DNAJC18Q9H819 358 aa21.78■■□□□ 1.08
CLN3-204ENST00000357857 RNF181Q9P0P0 153 aa21.78■■□□□ 1.08
CLN3-204ENST00000357857 ORC3Q9UBD5 711 aaPredicted RBP21.78■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms