RNA–Protein interactions for RNA: ENST00000335725.8

TDP1-201, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TDP1, Length 3,702 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-201ENST00000335725 KIFC2Q96AC6 838 aa9.62□□□□□ -0.87
TDP1-201ENST00000335725 ZNF570Q96NI8 536 aa9.62□□□□□ -0.87
TDP1-201ENST00000335725 RABEP2Q9H5N1 569 aa9.62□□□□□ -0.87
TDP1-201ENST00000335725 MIS18AQ9NYP9 233 aa9.62□□□□□ -0.87
TDP1-201ENST00000335725 PUF60Q9UHX1 559 aaKnown RBP9.62□□□□□ -0.87
TDP1-201ENST00000335725 FBXO9Q9UK97 447 aaPredicted RBP9.62□□□□□ -0.87
TDP1-201ENST00000335725 SH3GLB1Q9Y371 365 aa9.62□□□□□ -0.87
TDP1-201ENST00000335725 SH3TC1Q8TE82 1336 aa9.62□□□□□ -0.87
TDP1-201ENST00000335725 KDM6BO15054 1643 aa9.62□□□□□ -0.87
TDP1-201ENST00000335725 ERBINQ96RT1 1412 aa9.62□□□□□ -0.87
TDP1-201ENST00000335725 SNAPC4Q5SXM2 1469 aa9.62□□□□□ -0.87
TDP1-201ENST00000335725 SETD1BQ9UPS6 1966 aaKnown RBP9.62□□□□□ -0.87
TDP1-201ENST00000335725 EIF3FO00303 357 aaPredicted RBP9.62□□□□□ -0.87
TDP1-201ENST00000335725 OXCT1P55809 520 aa9.62□□□□□ -0.87
TDP1-201ENST00000335725 AKAP17AQ02040 695 aaKnown RBP9.62□□□□□ -0.87
TDP1-201ENST00000335725 CATIPQ7Z7H3 387 aa9.62□□□□□ -0.87
TDP1-201ENST00000335725 WDR24Q96S15 920 aa9.62□□□□□ -0.87
TDP1-201ENST00000335725 QPCTLQ9NXS2 382 aa9.62□□□□□ -0.87
TDP1-201ENST00000335725 CBFA2T2O43439 604 aa9.61□□□□□ -0.87
TDP1-201ENST00000335725 KDM1AO60341 852 aa9.61□□□□□ -0.87
TDP1-201ENST00000335725 GHRP10912 638 aa9.61□□□□□ -0.87
TDP1-201ENST00000335725 NSUN2Q08J23 767 aaKnown RBP eCLIP9.61□□□□□ -0.87
TDP1-201ENST00000335725 INAQ16352 499 aa9.61□□□□□ -0.87
TDP1-201ENST00000335725 LACTB2Q53H82 288 aaPredicted RBP9.61□□□□□ -0.87
TDP1-201ENST00000335725 CHMP7Q8WUX9 453 aaPredicted RBP9.61□□□□□ -0.87
TDP1-201ENST00000335725 TTC14Q96N46 770 aa9.61□□□□□ -0.87
TDP1-201ENST00000335725 NDNQ99608 321 aa9.61□□□□□ -0.87
TDP1-201ENST00000335725 UPF3BQ9BZI7 483 aaKnown RBP9.61□□□□□ -0.87
TDP1-201ENST00000335725 LSM1O15116 133 aaKnown RBP9.61□□□□□ -0.87
TDP1-201ENST00000335725 PRC1O43663 620 aa9.61□□□□□ -0.87
TDP1-201ENST00000335725 CCND1P24385 295 aa9.61□□□□□ -0.87
TDP1-201ENST00000335725 ELF3P78545 371 aaPredicted RBP9.61□□□□□ -0.87
TDP1-201ENST00000335725 SEPT2Q15019 361 aa9.61□□□□□ -0.87
TDP1-201ENST00000335725 NUTM2DQ5VT03 806 aaPredicted RBP9.61□□□□□ -0.87
TDP1-201ENST00000335725 CCDC70Q6NSX1 233 aa9.61□□□□□ -0.87
TDP1-201ENST00000335725 RSPH3Q86UC2 560 aa9.61□□□□□ -0.87
TDP1-201ENST00000335725 CCDC125Q86Z20 511 aa9.61□□□□□ -0.87
TDP1-201ENST00000335725 SERBP1Q8NC51 408 aaKnown RBP eCLIP9.61□□□□□ -0.87
TDP1-201ENST00000335725 RUNDC1Q96C34 613 aa9.61□□□□□ -0.87
TDP1-201ENST00000335725 OXCT2Q9BYC2 517 aaPredicted RBP9.61□□□□□ -0.87
TDP1-201ENST00000335725 DPPA5A6NC42 116 aa9.61□□□□□ -0.87
TDP1-201ENST00000335725 CSB-PGBD3P0DP91 1061 aa9.61□□□□□ -0.87
TDP1-201ENST00000335725 MAP7Q14244 749 aa9.61□□□□□ -0.87
TDP1-201ENST00000335725 C6orf89Q6UWU4 347 aa9.61□□□□□ -0.87
TDP1-201ENST00000335725 ARHGAP18Q8N392 663 aa9.61□□□□□ -0.87
TDP1-201ENST00000335725 FNBP4Q8N3X1 1017 aaPredicted RBP9.61□□□□□ -0.87
TDP1-201ENST00000335725 FGD4Q96M96 766 aa9.61□□□□□ -0.87
TDP1-201ENST00000335725 OSBPL10Q9BXB5 764 aa9.61□□□□□ -0.87
TDP1-201ENST00000335725 CTDP1Q9Y5B0 961 aaPredicted RBP9.61□□□□□ -0.87
TDP1-201ENST00000335725 DIAPH2O60879 1101 aa9.6□□□□□ -0.87
TDP1-201ENST00000335725 USP11P51784 963 aa9.6□□□□□ -0.87
TDP1-201ENST00000335725 ANKRD20A8PQ5CZ79 823 aa9.6□□□□□ -0.87
TDP1-201ENST00000335725 PACS1Q6VY07 963 aa9.6□□□□□ -0.87
TDP1-201ENST00000335725 TTC6Q86TZ1 520 aa9.6□□□□□ -0.87
TDP1-201ENST00000335725 ANKRD24Q8TF21 1146 aa9.6□□□□□ -0.87
TDP1-201ENST00000335725 DHTKD1Q96HY7 919 aaPredicted RBP9.6□□□□□ -0.87
TDP1-201ENST00000335725 NR1H4Q96RI1 486 aaPredicted RBP9.6□□□□□ -0.87
TDP1-201ENST00000335725 A0A1B0GVL5 298 aa9.6□□□□□ -0.87
TDP1-201ENST00000335725 FANCGO15287 622 aa9.6□□□□□ -0.87
TDP1-201ENST00000335725 CCT6AP40227 531 aaKnown RBP9.6□□□□□ -0.87
TDP1-201ENST00000335725 MLH1P40692 756 aa9.6□□□□□ -0.87
TDP1-201ENST00000335725 CCDC152Q4G0S7 254 aa9.6□□□□□ -0.87
TDP1-201ENST00000335725 PI16Q6UXB8 463 aa9.6□□□□□ -0.87
TDP1-201ENST00000335725 UBN2Q6ZU65 1347 aa9.6□□□□□ -0.87
TDP1-201ENST00000335725 Q6ZUG5 572 aa9.6□□□□□ -0.87
TDP1-201ENST00000335725 MAATS1Q7Z4T9 603 aa9.6□□□□□ -0.87
TDP1-201ENST00000335725 RPAP2Q8IXW5 612 aaPredicted RBP9.6□□□□□ -0.87
TDP1-201ENST00000335725 CCDC85AQ96PX6 553 aaPredicted RBP9.6□□□□□ -0.87
TDP1-201ENST00000335725 UIMC1Q96RL1 719 aa9.6□□□□□ -0.87
TDP1-201ENST00000335725 EHD4Q9H223 541 aa9.6□□□□□ -0.87
TDP1-201ENST00000335725 STAG3Q9UJ98 1225 aa9.6□□□□□ -0.87
TDP1-201ENST00000335725 DISP1Q96F81 1524 aa9.6□□□□□ -0.87
TDP1-201ENST00000335725 CFAP73A6NFT4 308 aa9.6□□□□□ -0.87
TDP1-201ENST00000335725 USO1O60763 962 aaKnown RBP9.6□□□□□ -0.87
TDP1-201ENST00000335725 GFPT2O94808 682 aa9.6□□□□□ -0.87
TDP1-201ENST00000335725 RAPGEF3O95398 923 aa9.6□□□□□ -0.87
TDP1-201ENST00000335725 FAM107AO95990 144 aa9.6□□□□□ -0.87
TDP1-201ENST00000335725 EPB41P11171 864 aaKnown RBP9.6□□□□□ -0.87
TDP1-201ENST00000335725 EIF2S2P20042 333 aaKnown RBP9.6□□□□□ -0.87
TDP1-201ENST00000335725 SDSP20132 328 aa9.6□□□□□ -0.87
TDP1-201ENST00000335725 SMARCA1P28370 1054 aa9.6□□□□□ -0.87
TDP1-201ENST00000335725 NACC2Q96BF6 587 aa9.6□□□□□ -0.87
TDP1-201ENST00000335725 SPATA32Q96LK8 384 aa9.6□□□□□ -0.87
TDP1-201ENST00000335725 L3MBTL1Q9Y468 752 aa9.6□□□□□ -0.87
TDP1-201ENST00000335725 SUPT6HQ7KZ85 1726 aaKnown RBP9.6□□□□□ -0.87
TDP1-201ENST00000335725 GSTA2P09210 222 aa9.59□□□□□ -0.87
TDP1-201ENST00000335725 MYCLP1P12525 358 aaPredicted RBP9.59□□□□□ -0.87
TDP1-201ENST00000335725 SCTRP47872 440 aa9.59□□□□□ -0.87
TDP1-201ENST00000335725 CREB3L3Q68CJ9 461 aa9.59□□□□□ -0.87
TDP1-201ENST00000335725 ERICH1Q86X53 443 aa9.59□□□□□ -0.87
TDP1-201ENST00000335725 LRRC49Q8IUZ0 686 aa9.59□□□□□ -0.87
TDP1-201ENST00000335725 DHX40Q8IX18 779 aaKnown RBP9.59□□□□□ -0.87
TDP1-201ENST00000335725 XPO4Q9C0E2 1151 aaKnown RBP9.59□□□□□ -0.87
TDP1-201ENST00000335725 GOLPH3LQ9H4A5 285 aa9.59□□□□□ -0.87
TDP1-201ENST00000335725 SDAD1Q9NVU7 687 aaKnown RBP eCLIP9.59□□□□□ -0.87
TDP1-201ENST00000335725 MSL3P1P0C860 447 aa9.59□□□□□ -0.87
TDP1-201ENST00000335725 HOXD12P35452 270 aa9.59□□□□□ -0.87
TDP1-201ENST00000335725 HIBCHQ6NVY1 386 aaPredicted RBP9.59□□□□□ -0.87
TDP1-201ENST00000335725 C11orf57Q6ZUT1 292 aaPredicted RBP9.59□□□□□ -0.87
TDP1-201ENST00000335725 NLRP14Q86W24 1093 aa9.59□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms