RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 CADPSQ9ULU8 1353 aa15.37■□□□□ 0.05
CCDC88A-201ENST00000263630 EP400NLQ6ZTU2 488 aa15.37■□□□□ 0.05
CCDC88A-201ENST00000263630 NUDCD3Q8IVD9 361 aa15.37■□□□□ 0.05
CCDC88A-201ENST00000263630 PEX26Q7Z412 305 aa15.37■□□□□ 0.05
CCDC88A-201ENST00000263630 CENPKQ9BS16 269 aa15.37■□□□□ 0.05
CCDC88A-201ENST00000263630 NEUROG2Q9H2A3 272 aa15.37■□□□□ 0.05
CCDC88A-201ENST00000263630 NOP56O00567 594 aaKnown RBP15.37■□□□□ 0.05
CCDC88A-201ENST00000263630 TAF11Q15544 211 aa15.37■□□□□ 0.05
CCDC88A-201ENST00000263630 FGD6Q6ZV73 1430 aa15.37■□□□□ 0.05
CCDC88A-201ENST00000263630 TRIM50Q86XT4 487 aa15.37■□□□□ 0.05
CCDC88A-201ENST00000263630 MAP3K2Q9Y2U5 619 aa15.37■□□□□ 0.05
CCDC88A-201ENST00000263630 CCDC169A6NNP5 214 aa15.37■□□□□ 0.05
CCDC88A-201ENST00000263630 ANKLE2Q86XL3 938 aa15.37■□□□□ 0.05
CCDC88A-201ENST00000263630 TTC1Q99614 292 aa15.37■□□□□ 0.05
CCDC88A-201ENST00000263630 SLFN5Q08AF3 891 aa15.37■□□□□ 0.05
CCDC88A-201ENST00000263630 PRPSAP1Q14558 356 aa15.37■□□□□ 0.05
CCDC88A-201ENST00000263630 MGARPQ8TDB4 240 aa15.37■□□□□ 0.05
CCDC88A-201ENST00000263630 LARP6Q9BRS8 491 aaKnown RBP15.37■□□□□ 0.05
CCDC88A-201ENST00000263630 MAGEB6P1A0A0J9YX57 407 aa15.36■□□□□ 0.05
CCDC88A-201ENST00000263630 NPR1P16066 1061 aa15.36■□□□□ 0.05
CCDC88A-201ENST00000263630 CDV3Q9UKY7 258 aaKnown RBP15.36■□□□□ 0.05
CCDC88A-201ENST00000263630 ERICH3Q5RHP9 1530 aa15.36■□□□□ 0.05
CCDC88A-201ENST00000263630 GOLGA8KD6RF30 607 aa15.36■□□□□ 0.05
CCDC88A-201ENST00000263630 TMED1Q13445 227 aa15.36■□□□□ 0.05
CCDC88A-201ENST00000263630 F13A1P00488 732 aa15.36■□□□□ 0.05
CCDC88A-201ENST00000263630 KRT8P05787 483 aa15.36■□□□□ 0.05
CCDC88A-201ENST00000263630 PEX19P40855 299 aa15.36■□□□□ 0.05
CCDC88A-201ENST00000263630 CDKL2Q92772 493 aa15.36■□□□□ 0.05
CCDC88A-201ENST00000263630 RPS6KA1Q15418 735 aa15.36■□□□□ 0.05
CCDC88A-201ENST00000263630 CLEC11AQ9Y240 323 aa15.36■□□□□ 0.05
CCDC88A-201ENST00000263630 PRPF6O94906 941 aaKnown RBP15.36■□□□□ 0.05
CCDC88A-201ENST00000263630 USP6NLQ92738 828 aa15.36■□□□□ 0.05
CCDC88A-201ENST00000263630 TMX3Q96JJ7 454 aa15.36■□□□□ 0.05
CCDC88A-201ENST00000263630 NMIQ13287 307 aaPredicted RBP15.36■□□□□ 0.05
CCDC88A-201ENST00000263630 FBXO41Q8TF61 875 aa15.36■□□□□ 0.05
CCDC88A-201ENST00000263630 CAPN7Q9Y6W3 813 aa15.36■□□□□ 0.05
CCDC88A-201ENST00000263630 SYNRGQ9UMZ2 1314 aa15.36■□□□□ 0.05
CCDC88A-201ENST00000263630 GTPBP10A4D1E9 387 aaKnown RBP15.36■□□□□ 0.05
CCDC88A-201ENST00000263630 F8W8V4 182 aa15.36■□□□□ 0.05
CCDC88A-201ENST00000263630 CASP2P42575 452 aa15.36■□□□□ 0.05
CCDC88A-201ENST00000263630 DNM2P50570 870 aa15.36■□□□□ 0.05
CCDC88A-201ENST00000263630 TTC22Q5TAA0 569 aa15.36■□□□□ 0.05
CCDC88A-201ENST00000263630 LRPPRCP42704 1394 aaKnown RBP15.35■□□□□ 0.05
CCDC88A-201ENST00000263630 NR1I2O75469 434 aa15.35■□□□□ 0.05
CCDC88A-201ENST00000263630 ARHGDIAP52565 204 aa15.35■□□□□ 0.05
CCDC88A-201ENST00000263630 TRIM31Q9BZY9 425 aa15.35■□□□□ 0.05
CCDC88A-201ENST00000263630 TRPC6Q9Y210 931 aa15.35■□□□□ 0.05
CCDC88A-201ENST00000263630 POLR2BP30876 1174 aaKnown RBP15.35■□□□□ 0.05
CCDC88A-201ENST00000263630 IFNA8P32881 189 aa15.35■□□□□ 0.05
CCDC88A-201ENST00000263630 PCYT1AP49585 367 aa15.35■□□□□ 0.05
CCDC88A-201ENST00000263630 ASPHQ12797 758 aa15.35■□□□□ 0.05
CCDC88A-201ENST00000263630 NSD3Q9BZ95 1437 aa15.35■□□□□ 0.05
CCDC88A-201ENST00000263630 GNA14O95837 355 aa15.35■□□□□ 0.05
CCDC88A-201ENST00000263630 EEF1B2P24534 225 aaKnown RBP15.35■□□□□ 0.05
CCDC88A-201ENST00000263630 RUNDC3BQ96NL0 473 aa15.35■□□□□ 0.05
CCDC88A-201ENST00000263630 EIF3CLB5ME19 914 aaKnown RBP15.35■□□□□ 0.05
CCDC88A-201ENST00000263630 STX1BP61266 288 aa15.35■□□□□ 0.05
CCDC88A-201ENST00000263630 EIF3CQ99613 913 aaKnown RBP15.35■□□□□ 0.05
CCDC88A-201ENST00000263630 NBPF3Q9H094 633 aa15.35■□□□□ 0.05
CCDC88A-201ENST00000263630 ZNF219Q9P2Y4 722 aaPredicted RBP15.35■□□□□ 0.05
CCDC88A-201ENST00000263630 ZRANB2O95218 330 aaKnown RBP eCLIP15.35■□□□□ 0.05
CCDC88A-201ENST00000263630 TRIM15Q9C019 465 aa15.35■□□□□ 0.05
CCDC88A-201ENST00000263630 NBPF5PQ86XG9 351 aaPredicted RBP15.35■□□□□ 0.05
CCDC88A-201ENST00000263630 SUCLA2Q9P2R7 463 aaPredicted RBP15.35■□□□□ 0.05
CCDC88A-201ENST00000263630 POGZQ7Z3K3 1410 aa15.35■□□□□ 0.05
CCDC88A-201ENST00000263630 GSTA4O15217 222 aa15.35■□□□□ 0.05
CCDC88A-201ENST00000263630 TMTC1Q8IUR5 882 aa15.35■□□□□ 0.05
CCDC88A-201ENST00000263630 BRF1Q92994 677 aa15.35■□□□□ 0.05
CCDC88A-201ENST00000263630 ZFXP17010 805 aaPredicted RBP15.34■□□□□ 0.05
CCDC88A-201ENST00000263630 ECE1P42892 770 aa15.34■□□□□ 0.05
CCDC88A-201ENST00000263630 STX17P56962 302 aa15.34■□□□□ 0.05
CCDC88A-201ENST00000263630 SLC12A5Q9H2X9 1139 aa15.34■□□□□ 0.05
CCDC88A-201ENST00000263630 HARSP12081 509 aaKnown RBP15.34■□□□□ 0.05
CCDC88A-201ENST00000263630 SLC52A1Q9NWF4 448 aa15.34■□□□□ 0.05
CCDC88A-201ENST00000263630 USTQ9Y2C2 406 aa15.34■□□□□ 0.05
CCDC88A-201ENST00000263630 IQCB1Q15051 598 aa15.34■□□□□ 0.05
CCDC88A-201ENST00000263630 NYXQ9GZU5 481 aa15.34■□□□□ 0.05
CCDC88A-201ENST00000263630 PARP1P09874 1014 aaKnown RBP15.34■□□□□ 0.05
CCDC88A-201ENST00000263630 CTNNA1P35221 906 aaKnown RBP15.34■□□□□ 0.05
CCDC88A-201ENST00000263630 RINT1Q6NUQ1 792 aa15.34■□□□□ 0.05
CCDC88A-201ENST00000263630 TMTC3Q6ZXV5 915 aa15.34■□□□□ 0.05
CCDC88A-201ENST00000263630 PALMDQ9NP74 551 aa15.34■□□□□ 0.05
CCDC88A-201ENST00000263630 TYW5A2RUC4 315 aaKnown RBP15.33■□□□□ 0.05
CCDC88A-201ENST00000263630 AMFRQ9UKV5 643 aa15.33■□□□□ 0.05
CCDC88A-201ENST00000263630 MAFGO15525 162 aa15.33■□□□□ 0.05
CCDC88A-201ENST00000263630 CEP104O60308 925 aa15.33■□□□□ 0.05
CCDC88A-201ENST00000263630 PICALMQ13492 652 aa15.33■□□□□ 0.05
CCDC88A-201ENST00000263630 HP1BP3Q5SSJ5 553 aaPredicted RBP15.33■□□□□ 0.05
CCDC88A-201ENST00000263630 SPOUT1Q5T280 376 aaKnown RBP15.33■□□□□ 0.05
CCDC88A-201ENST00000263630 RPS6KC1Q96S38 1066 aa15.33■□□□□ 0.05
CCDC88A-201ENST00000263630 DDX41Q9UJV9 622 aaKnown RBP15.33■□□□□ 0.05
CCDC88A-201ENST00000263630 CWF19L2Q2TBE0 894 aaKnown RBP15.33■□□□□ 0.04
CCDC88A-201ENST00000263630 TTI1O43156 1089 aa15.33■□□□□ 0.04
CCDC88A-201ENST00000263630 RNF207Q6ZRF8 634 aa15.33■□□□□ 0.04
CCDC88A-201ENST00000263630 MAP7D3Q8IWC1 876 aa15.33■□□□□ 0.04
CCDC88A-201ENST00000263630 HYOU1Q9Y4L1 999 aa15.33■□□□□ 0.04
CCDC88A-201ENST00000263630 SRGAP2BP0DMP2 458 aa15.33■□□□□ 0.04
CCDC88A-201ENST00000263630 BBOF1Q8ND07 529 aa15.33■□□□□ 0.04
CCDC88A-201ENST00000263630 FGD4Q96M96 766 aa15.33■□□□□ 0.04
CCDC88A-201ENST00000263630 MED4Q9NPJ6 270 aa15.33■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms