RNA–Protein interactions for RNA: YAL013W

DEP1, Transcript of Component of the Rpd3L histone deacetylase complex, yeastyeast

Gene DEP1, Length 1,218 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DEP1YAL013W MET14Q02196 202 aa14.4□□□□□ -0.1
DEP1YAL013W HOS1Q12214 470 aa14.4□□□□□ -0.1
DEP1YAL013W SYN8P31377 255 aa14.39□□□□□ -0.11
DEP1YAL013W URA8P38627 578 aaPredicted RBP14.39□□□□□ -0.11
DEP1YAL013W TRS85P46944 698 aa14.39□□□□□ -0.11
DEP1YAL013W MRS2Q01926 470 aa14.39□□□□□ -0.11
DEP1YAL013W HMG2P12684 1045 aa14.38□□□□□ -0.11
DEP1YAL013W MET22P32179 357 aa14.38□□□□□ -0.11
DEP1YAL013W SMI1P32566 505 aa14.38□□□□□ -0.11
DEP1YAL013W SEC6P32844 805 aa14.38□□□□□ -0.11
DEP1YAL013W ETR1P38071 380 aa14.38□□□□□ -0.11
DEP1YAL013W ELO3P40319 345 aa14.38□□□□□ -0.11
DEP1YAL013W YFL012WP43580 148 aa14.38□□□□□ -0.11
DEP1YAL013W TRM112P53738 135 aaPredicted RBP14.38□□□□□ -0.11
DEP1YAL013W YOR387CQ08910 206 aa14.38□□□□□ -0.11
DEP1YAL013W OCA6Q12454 224 aa14.38□□□□□ -0.11
DEP1YAL013W AFI1Q99222 893 aa14.38□□□□□ -0.11
DEP1YAL013W COX5AP00424 153 aa14.37□□□□□ -0.11
DEP1YAL013W PAT1P25644 796 aaKnown RBP14.37□□□□□ -0.11
DEP1YAL013W URA10P30402 227 aa14.37□□□□□ -0.11
DEP1YAL013W HEM12P32347 362 aaPredicted RBP14.37□□□□□ -0.11
DEP1YAL013W RRN7P40992 514 aa14.37□□□□□ -0.11
DEP1YAL013W UFE1P41834 346 aa14.37□□□□□ -0.11
DEP1YAL013W TAN1P53072 289 aaPredicted RBP14.37□□□□□ -0.11
DEP1YAL013W COQ6P53318 479 aa14.37□□□□□ -0.11
DEP1YAL013W YLR012CQ07927 99 aa14.37□□□□□ -0.11
DEP1YAL013W GPA2P10823 449 aa14.36□□□□□ -0.11
DEP1YAL013W AMS1P22855 1083 aa14.36□□□□□ -0.11
DEP1YAL013W YBR032WP38223 100 aa14.36□□□□□ -0.11
DEP1YAL013W ATG12P38316 186 aa14.36□□□□□ -0.11
DEP1YAL013W VAC8P39968 578 aa14.36□□□□□ -0.11
DEP1YAL013W TEP1P53916 434 aa14.36□□□□□ -0.11
DEP1YAL013W BUD22Q04347 519 aaKnown RBP14.36□□□□□ -0.11
DEP1YAL013W YET3Q07451 203 aa14.36□□□□□ -0.11
DEP1YAL013W SLD7Q08457 257 aa14.36□□□□□ -0.11
DEP1YAL013W YEL077CQ3E7X8 1277 aa14.36□□□□□ -0.11
DEP1YAL013W INO1P11986 533 aa14.35□□□□□ -0.11
DEP1YAL013W SLU7Q02775 382 aaKnown RBP14.35□□□□□ -0.11
DEP1YAL013W ADI1Q03677 179 aa14.35□□□□□ -0.11
DEP1YAL013W SLP1Q12232 587 aa14.35□□□□□ -0.11
DEP1YAL013W SSC1P0CS90 654 aaKnown RBP14.34□□□□□ -0.11
DEP1YAL013W APE1P14904 514 aa14.34□□□□□ -0.11
DEP1YAL013W HSP60P19882 572 aaKnown RBP14.34□□□□□ -0.11
DEP1YAL013W AAT2P23542 418 aaKnown RBP14.34□□□□□ -0.11
DEP1YAL013W PPH22P23595 377 aa14.34□□□□□ -0.11
DEP1YAL013W KAR9P32526 644 aa14.34□□□□□ -0.11
DEP1YAL013W YIL161WP40449 235 aaKnown RBP14.34□□□□□ -0.11
DEP1YAL013W DSN1P40568 576 aa14.34□□□□□ -0.11
DEP1YAL013W TFG1P41895 735 aaPredicted RBP14.34□□□□□ -0.11
DEP1YAL013W YJL107CP42947 387 aa14.34□□□□□ -0.11
DEP1YAL013W BST1P43571 1029 aa14.34□□□□□ -0.11
DEP1YAL013W ROK1P45818 564 aaPredicted RBP14.34□□□□□ -0.11
DEP1YAL013W CCT8P47079 568 aaKnown RBP14.34□□□□□ -0.11
DEP1YAL013W PRP24P49960 444 aaKnown RBP14.34□□□□□ -0.11
DEP1YAL013W RPL34AP87262 121 aaPredicted RBP14.34□□□□□ -0.11
DEP1YAL013W RLI1Q03195 608 aaKnown RBP14.34□□□□□ -0.11
DEP1YAL013W RPN4Q03465 531 aa14.34□□□□□ -0.11
DEP1YAL013W RTN1Q04947 295 aaKnown RBP14.34□□□□□ -0.11
DEP1YAL013W CDC10P25342 322 aaKnown RBP14.33□□□□□ -0.12
DEP1YAL013W MRS6P32864 603 aaKnown RBP14.33□□□□□ -0.12
DEP1YAL013W REV7P38927 245 aa14.33□□□□□ -0.12
DEP1YAL013W YPL014WQ02606 381 aa14.33□□□□□ -0.12
DEP1YAL013W PEX34P25584 144 aa14.32□□□□□ -0.12
DEP1YAL013W YCL068CP25593 260 aa14.32□□□□□ -0.12
DEP1YAL013W BEM3P32873 1128 aa14.32□□□□□ -0.12
DEP1YAL013W SGE1P33335 543 aa14.32□□□□□ -0.12
DEP1YAL013W LOS1P33418 1100 aaPredicted RBP14.32□□□□□ -0.12
DEP1YAL013W LSB6P42951 607 aa14.32□□□□□ -0.12
DEP1YAL013W STR3P53101 465 aaKnown RBP14.32□□□□□ -0.12
DEP1YAL013W SIW14P53965 281 aa14.32□□□□□ -0.12
DEP1YAL013W VHS3Q08438 674 aa14.32□□□□□ -0.12
DEP1YAL013W ACO1P19414 778 aaKnown RBP RIP-Chip data14.31□□□□□ -0.12not detected
DEP1YAL013W PSE1P32337 1089 aaKnown RBP14.31□□□□□ -0.12
DEP1YAL013W NDI1P32340 513 aa14.31□□□□□ -0.12
DEP1YAL013W PEX5P35056 612 aa14.31□□□□□ -0.12
DEP1YAL013W PEX28P38848 579 aa14.31□□□□□ -0.12
DEP1YAL013W TDA10P42938 290 aa14.31□□□□□ -0.12
DEP1YAL013W TRF5P48561 642 aaKnown RBP14.31□□□□□ -0.12
DEP1YAL013W ASN2P49090 572 aaKnown RBP14.31□□□□□ -0.12
DEP1YAL013W BIO4P53630 237 aa14.31□□□□□ -0.12
DEP1YAL013W PGC1Q08959 321 aa14.31□□□□□ -0.12
DEP1YAL013W LDB17Q12342 491 aa14.31□□□□□ -0.12
DEP1YAL013W ADD66P36040 267 aa14.3□□□□□ -0.12
DEP1YAL013W APM3P38153 483 aa14.3□□□□□ -0.12
DEP1YAL013W SRP68P38687 599 aaKnown RBP14.3□□□□□ -0.12
DEP1YAL013W IST3P40565 148 aaPredicted RBP14.3□□□□□ -0.12
DEP1YAL013W LIA1P47120 325 aaKnown RBP14.3□□□□□ -0.12
DEP1YAL013W YCS4Q06156 1176 aa14.3□□□□□ -0.12
DEP1YAL013W CAB3P36076 571 aa14.29□□□□□ -0.12
DEP1YAL013W KTR4P38131 464 aa14.29□□□□□ -0.12
DEP1YAL013W PFK26P40433 827 aaKnown RBP14.29□□□□□ -0.12
DEP1YAL013W CDC14Q00684 551 aa14.29□□□□□ -0.12
DEP1YAL013W CDC123Q05791 360 aa14.29□□□□□ -0.12
DEP1YAL013W YLR053CQ12026 108 aa14.29□□□□□ -0.12
DEP1YAL013W GDA1P32621 518 aa14.28□□□□□ -0.12
DEP1YAL013W SQT1P35184 431 aa14.28□□□□□ -0.12
DEP1YAL013W YHL041WP38730 149 aa14.28□□□□□ -0.12
DEP1YAL013W SEO1P39709 593 aa14.28□□□□□ -0.12
DEP1YAL013W OAF1P39720 1047 aaPredicted RBP14.28□□□□□ -0.12
DEP1YAL013W RAD26P40352 1085 aa14.28□□□□□ -0.12
Retrieved 100 of 5,963 RNA–protein pairs in 96.1 ms