RNA–Protein interactions for RNA: ENST00000636020.1

CLN6-212, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 2

Gene CLN6, Length 894 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-212ENST00000636020 COL9A1P20849 921 aa22.77■■□□□ 1.24
CLN6-212ENST00000636020 ASCC2Q9H1I8 757 aaPredicted RBP22.77■■□□□ 1.24
CLN6-212ENST00000636020 EXOSC9Q06265 439 aaKnown RBP22.76■■□□□ 1.23
CLN6-212ENST00000636020 CACNB2Q08289 660 aaPredicted RBP22.76■■□□□ 1.23
CLN6-212ENST00000636020 SPP2Q13103 211 aa22.76■■□□□ 1.23
CLN6-212ENST00000636020 PABPC4Q13310 644 aaKnown RBP eCLIP22.76■■□□□ 1.23
CLN6-212ENST00000636020 SYMPKQ92797 1274 aaKnown RBP22.76■■□□□ 1.23
CLN6-212ENST00000636020 SLC5A1P13866 664 aa22.75■■□□□ 1.23
CLN6-212ENST00000636020 LPIN2Q92539 896 aa22.75■■□□□ 1.23
CLN6-212ENST00000636020 NUDT12Q9BQG2 462 aa22.75■■□□□ 1.23
CLN6-212ENST00000636020 DDX4Q9NQI0 724 aaKnown RBP22.75■■□□□ 1.23
CLN6-212ENST00000636020 SALL1Q9NSC2 1324 aa22.75■■□□□ 1.23
CLN6-212ENST00000636020 TBC1D12O60347 775 aa22.74■■□□□ 1.23
CLN6-212ENST00000636020 HMGCS2P54868 508 aa22.74■■□□□ 1.23
CLN6-212ENST00000636020 TRMT44Q8IYL2 757 aaKnown RBP22.74■■□□□ 1.23
CLN6-212ENST00000636020 GAKO14976 1311 aa22.74■■□□□ 1.23
CLN6-212ENST00000636020 LOC285556D6RIA3 1793 aa22.73■■□□□ 1.23
CLN6-212ENST00000636020 CCND3P30281 292 aaPredicted RBP22.73■■□□□ 1.23
CLN6-212ENST00000636020 ZNF280CQ8ND82 737 aa22.73■■□□□ 1.23
CLN6-212ENST00000636020 SOCS4Q8WXH5 440 aa22.73■■□□□ 1.23
CLN6-212ENST00000636020 MYLIPQ8WY64 445 aa22.73■■□□□ 1.23
CLN6-212ENST00000636020 ZKSCAN1P17029 563 aaPredicted RBP22.72■■□□□ 1.23
CLN6-212ENST00000636020 USP6NLQ92738 828 aa22.72■■□□□ 1.23
CLN6-212ENST00000636020 SH3D19Q5HYK7 790 aa22.71■■□□□ 1.23
CLN6-212ENST00000636020 TBC1D2Q9BYX2 928 aa22.71■■□□□ 1.23
CLN6-212ENST00000636020 OSBPL5Q9H0X9 879 aaPredicted RBP22.71■■□□□ 1.23
CLN6-212ENST00000636020 MYH2Q9UKX2 1941 aa22.7■■□□□ 1.23
CLN6-212ENST00000636020 SHHQ15465 462 aa22.7■■□□□ 1.22
CLN6-212ENST00000636020 NCBP3Q53F19 620 aaKnown RBP22.7■■□□□ 1.22
CLN6-212ENST00000636020 SENP6Q9GZR1 1112 aaPredicted RBP22.7■■□□□ 1.22
CLN6-212ENST00000636020 TTYH1Q9H313 450 aaPredicted RBP22.7■■□□□ 1.22
CLN6-212ENST00000636020 FAM196BA6NMK8 535 aa22.69■■□□□ 1.22
CLN6-212ENST00000636020 EYA2O00167 538 aa22.69■■□□□ 1.22
CLN6-212ENST00000636020 PEX10O60683 326 aa22.69■■□□□ 1.22
CLN6-212ENST00000636020 PICALMQ13492 652 aa22.69■■□□□ 1.22
CLN6-212ENST00000636020 CCL14Q16627 93 aa22.69■■□□□ 1.22
CLN6-212ENST00000636020 FAM163AQ96GL9 167 aaPredicted RBP22.69■■□□□ 1.22
CLN6-212ENST00000636020 XPO5Q9HAV4 1204 aaKnown RBP eCLIP22.69■■□□□ 1.22
CLN6-212ENST00000636020 TXNRD2Q9NNW7 524 aa22.69■■□□□ 1.22
CLN6-212ENST00000636020 GNL3LQ9NVN8 582 aaKnown RBP22.69■■□□□ 1.22
CLN6-212ENST00000636020 DENND2AQ9ULE3 1009 aa22.69■■□□□ 1.22
CLN6-212ENST00000636020 GPRC5AQ8NFJ5 357 aa22.68■■□□□ 1.22
CLN6-212ENST00000636020 P2RX7Q99572 595 aaKnown RBP22.68■■□□□ 1.22
CLN6-212ENST00000636020 MAST2Q6P0Q8 1798 aa22.68■■□□□ 1.22
CLN6-212ENST00000636020 SEMA3EO15041 775 aa22.67■■□□□ 1.22
CLN6-212ENST00000636020 MAPK4P31152 587 aa22.67■■□□□ 1.22
CLN6-212ENST00000636020 HOXA7P31268 230 aaPredicted RBP22.67■■□□□ 1.22
CLN6-212ENST00000636020 IRX3P78415 501 aaPredicted RBP22.67■■□□□ 1.22
CLN6-212ENST00000636020 PDE3AQ14432 1141 aa22.67■■□□□ 1.22
CLN6-212ENST00000636020 RRP1BQ14684 758 aaKnown RBP22.67■■□□□ 1.22
CLN6-212ENST00000636020 C9orf50Q5SZB4 431 aa22.67■■□□□ 1.22
CLN6-212ENST00000636020 MORN1Q5T089 497 aa22.67■■□□□ 1.22
CLN6-212ENST00000636020 PRKAG2Q9UGJ0 569 aa22.67■■□□□ 1.22
CLN6-212ENST00000636020 USP17L5A8MUK1 530 aa22.66■■□□□ 1.22
CLN6-212ENST00000636020 TNFRSF10AO00220 468 aa22.66■■□□□ 1.22
CLN6-212ENST00000636020 FOSL2P15408 326 aa22.66■■□□□ 1.22
CLN6-212ENST00000636020 CAP2P40123 477 aa22.66■■□□□ 1.22
CLN6-212ENST00000636020 RGS2P41220 211 aa22.66■■□□□ 1.22
CLN6-212ENST00000636020 RFX5P48382 616 aaPredicted RBP22.66■■□□□ 1.22
CLN6-212ENST00000636020 ATN1P54259 1190 aaPredicted RBP22.66■■□□□ 1.22
CLN6-212ENST00000636020 SMAD3P84022 425 aaKnown RBP22.66■■□□□ 1.22
CLN6-212ENST00000636020 ATG9AQ7Z3C6 839 aa22.66■■□□□ 1.22
CLN6-212ENST00000636020 ZGPATQ8N5A5 531 aaKnown RBP22.66■■□□□ 1.22
CLN6-212ENST00000636020 RAPGEFL1Q9UHV5 662 aa22.66■■□□□ 1.22
CLN6-212ENST00000636020 ZBTB22O15209 634 aa22.65■■□□□ 1.22
CLN6-212ENST00000636020 NPM3O75607 178 aaKnown RBP22.65■■□□□ 1.22
CLN6-212ENST00000636020 BTDP43251 543 aa22.65■■□□□ 1.22
CLN6-212ENST00000636020 PHKA1P46020 1223 aa22.65■■□□□ 1.22
CLN6-212ENST00000636020 HERVK_113P62684 666 aa22.65■■□□□ 1.22
CLN6-212ENST00000636020 Q3C1V9 767 aa22.65■■□□□ 1.22
CLN6-212ENST00000636020 TJAP1Q5JTD0 557 aa22.65■■□□□ 1.22
CLN6-212ENST00000636020 WDR63Q8IWG1 891 aa22.65■■□□□ 1.22
CLN6-212ENST00000636020 RBPJLQ9UBG7 517 aa22.65■■□□□ 1.22
CLN6-212ENST00000636020 LTBP2Q14767 1821 aa22.64■■□□□ 1.22
CLN6-212ENST00000636020 RHBDL3P58872 404 aa22.64■■□□□ 1.21
CLN6-212ENST00000636020 RTP1P59025 263 aa22.64■■□□□ 1.21
CLN6-212ENST00000636020 ATP2B3Q16720 1220 aa22.64■■□□□ 1.21
CLN6-212ENST00000636020 DZIP1Q86YF9 867 aaKnown RBP22.64■■□□□ 1.21
CLN6-212ENST00000636020 SLF2Q8IX21 1173 aa22.64■■□□□ 1.21
CLN6-212ENST00000636020 APBA2Q99767 749 aa22.64■■□□□ 1.21
CLN6-212ENST00000636020 PORCNQ9H237 461 aa22.64■■□□□ 1.21
CLN6-212ENST00000636020 GPR142Q7Z601 462 aa22.63■■□□□ 1.21
CLN6-212ENST00000636020 WDR18Q9BV38 432 aa22.63■■□□□ 1.21
CLN6-212ENST00000636020 AS3MTQ9HBK9 375 aa22.63■■□□□ 1.21
CLN6-212ENST00000636020 FRMPD3Q5JV73 1810 aa22.63■■□□□ 1.21
CLN6-212ENST00000636020 ERVK-9P63128 1117 aa22.62■■□□□ 1.21
CLN6-212ENST00000636020 ERVK-24P63145 666 aa22.62■■□□□ 1.21
CLN6-212ENST00000636020 MTMR2Q13614 643 aa22.62■■□□□ 1.21
CLN6-212ENST00000636020 PLEKHH3Q7Z736 793 aa22.62■■□□□ 1.21
CLN6-212ENST00000636020 ATAD5Q96QE3 1844 aa22.61■■□□□ 1.21
CLN6-212ENST00000636020 MROH7-TTC4A0A0A0MT08 1334 aa22.61■■□□□ 1.21
CLN6-212ENST00000636020 GPR75-ASB3A0A0A6YYF3 556 aa22.61■■□□□ 1.21
CLN6-212ENST00000636020 BACE1P56817 501 aa22.61■■□□□ 1.21
CLN6-212ENST00000636020 CCAR1Q8IX12 1150 aaKnown RBP22.61■■□□□ 1.21
CLN6-212ENST00000636020 LPAR1Q92633 364 aa22.61■■□□□ 1.21
CLN6-212ENST00000636020 TMOD4Q9NZQ9 345 aa22.61■■□□□ 1.21
CLN6-212ENST00000636020 ABCF2Q9UG63 623 aa22.61■■□□□ 1.21
CLN6-212ENST00000636020 DDX20Q9UHI6 824 aaKnown RBP22.61■■□□□ 1.21
CLN6-212ENST00000636020 DNM1LO00429 736 aa22.6■■□□□ 1.21
CLN6-212ENST00000636020 MAP2K5Q13163 448 aa22.6■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 164.7 ms