RNA–Protein interactions for RNA: ENST00000601912.5

VRK3-225, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VRK3, Length 1,668 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-225ENST00000601912 FZD9O00144 591 aa21.15■□□□□ 0.98
VRK3-225ENST00000601912 PRDM1O75626 825 aa21.15■□□□□ 0.98
VRK3-225ENST00000601912 RPS12P25398 132 aaKnown RBP21.15■□□□□ 0.98
VRK3-225ENST00000601912 LIFRP42702 1097 aa21.15■□□□□ 0.98
VRK3-225ENST00000601912 PLCD1P51178 756 aa21.15■□□□□ 0.98
VRK3-225ENST00000601912 DLGAP5Q15398 846 aa21.15■□□□□ 0.98
VRK3-225ENST00000601912 IQCA1Q86XH1 822 aa21.15■□□□□ 0.98
VRK3-225ENST00000601912 TMTC2Q8N394 836 aa21.15■□□□□ 0.98
VRK3-225ENST00000601912 NKX2-3Q8TAU0 364 aa21.15■□□□□ 0.98
VRK3-225ENST00000601912 IDI2Q9BXS1 227 aa21.15■□□□□ 0.98
VRK3-225ENST00000601912 MKNK2Q9HBH9 465 aa21.15■□□□□ 0.98
VRK3-225ENST00000601912 GPHNQ9NQX3 736 aaPredicted RBP21.15■□□□□ 0.98
VRK3-225ENST00000601912 SMC3Q9UQE7 1217 aa21.15■□□□□ 0.98
VRK3-225ENST00000601912 FOCADQ5VW36 1801 aa21.15■□□□□ 0.98
VRK3-225ENST00000601912 ADAMTSL1Q8N6G6 1762 aa21.15■□□□□ 0.98
VRK3-225ENST00000601912 PFKFB2O60825 505 aa21.15■□□□□ 0.98
VRK3-225ENST00000601912 GTF3C6Q969F1 213 aa21.15■□□□□ 0.98
VRK3-225ENST00000601912 OSBPL5Q9H0X9 879 aaPredicted RBP21.15■□□□□ 0.98
VRK3-225ENST00000601912 DDX4Q9NQI0 724 aaKnown RBP21.15■□□□□ 0.98
VRK3-225ENST00000601912 PCDHAC2Q9Y5I4 1007 aa21.15■□□□□ 0.98
VRK3-225ENST00000601912 KLF18A0A0U1RQI7 1052 aa21.14■□□□□ 0.97
VRK3-225ENST00000601912 NPM3O75607 178 aaKnown RBP21.14■□□□□ 0.97
VRK3-225ENST00000601912 LMNB1P20700 586 aa21.14■□□□□ 0.97
VRK3-225ENST00000601912 PDIA3P30101 505 aaKnown RBP21.14■□□□□ 0.97
VRK3-225ENST00000601912 EVX2Q03828 476 aa21.14■□□□□ 0.97
VRK3-225ENST00000601912 NFXL1Q6ZNB6 911 aa21.14■□□□□ 0.97
VRK3-225ENST00000601912 PRMT6Q96LA8 375 aaPredicted RBP21.14■□□□□ 0.97
VRK3-225ENST00000601912 TMOD2Q9NZR1 351 aa21.14■□□□□ 0.97
VRK3-225ENST00000601912 MYH1P12882 1939 aa21.13■□□□□ 0.97
VRK3-225ENST00000601912 SPDYE2BA6NHP3 402 aa21.13■□□□□ 0.97
VRK3-225ENST00000601912 SPDYE6P0CI01 402 aa21.13■□□□□ 0.97
VRK3-225ENST00000601912 PRELPP51888 382 aa21.13■□□□□ 0.97
VRK3-225ENST00000601912 NUCB2P80303 420 aa21.13■□□□□ 0.97
VRK3-225ENST00000601912 WTAPQ15007 396 aa21.13■□□□□ 0.97
VRK3-225ENST00000601912 SGMS1Q86VZ5 419 aa21.13■□□□□ 0.97
VRK3-225ENST00000601912 ZNF444Q8N0Y2 327 aaPredicted RBP21.13■□□□□ 0.97
VRK3-225ENST00000601912 DYNLL2Q96FJ2 89 aa21.13■□□□□ 0.97
VRK3-225ENST00000601912 TDRD3Q9H7E2 651 aaKnown RBP21.13■□□□□ 0.97
VRK3-225ENST00000601912 LY9Q9HBG7 655 aa21.13■□□□□ 0.97
VRK3-225ENST00000601912 CCDC69A6NI79 296 aa21.12■□□□□ 0.97
VRK3-225ENST00000601912 TSPY2A6NKD2 308 aa21.12■□□□□ 0.97
VRK3-225ENST00000601912 HLA-DOAP06340 250 aa21.12■□□□□ 0.97
VRK3-225ENST00000601912 NFIAQ12857 509 aa21.12■□□□□ 0.97
VRK3-225ENST00000601912 C16orf86Q6ZW13 317 aa21.12■□□□□ 0.97
VRK3-225ENST00000601912 MTMR14Q8NCE2 650 aa21.12■□□□□ 0.97
VRK3-225ENST00000601912 ZKSCAN3Q9BRR0 538 aa21.12■□□□□ 0.97
VRK3-225ENST00000601912 DHX36Q9H2U1 1008 aaKnown RBP21.12■□□□□ 0.97
VRK3-225ENST00000601912 BRPF3Q9ULD4 1205 aa21.12■□□□□ 0.97
VRK3-225ENST00000601912 DDX60LQ5H9U9 1706 aaKnown RBP21.12■□□□□ 0.97
VRK3-225ENST00000601912 ECM29Q5VYK3 1845 aa21.12■□□□□ 0.97
VRK3-225ENST00000601912 ST3GAL1Q11201 340 aa21.12■□□□□ 0.97
VRK3-225ENST00000601912 SCRN1Q12765 414 aa21.12■□□□□ 0.97
VRK3-225ENST00000601912 SYNE3Q6ZMZ3 975 aa21.12■□□□□ 0.97
VRK3-225ENST00000601912 ZSCAN10Q96SZ4 725 aaPredicted RBP21.12■□□□□ 0.97
VRK3-225ENST00000601912 GOLGA8BA8MQT2 603 aa21.11■□□□□ 0.97
VRK3-225ENST00000601912 MYO1BO43795 1136 aa21.11■□□□□ 0.97
VRK3-225ENST00000601912 DHX16O60231 1041 aaKnown RBP21.11■□□□□ 0.97
VRK3-225ENST00000601912 CDK8P49336 464 aa21.11■□□□□ 0.97
VRK3-225ENST00000601912 DPF2Q92785 391 aa21.11■□□□□ 0.97
VRK3-225ENST00000601912 LLPHQ9BRT6 129 aaKnown RBP21.11■□□□□ 0.97
VRK3-225ENST00000601912 SLC12A7Q9Y666 1083 aa21.11■□□□□ 0.97
VRK3-225ENST00000601912 GJA3Q9Y6H8 435 aa21.11■□□□□ 0.97
VRK3-225ENST00000601912 TNKSO95271 1327 aa21.1■□□□□ 0.97
VRK3-225ENST00000601912 ENTPD3O75355 529 aa21.1■□□□□ 0.97
VRK3-225ENST00000601912 CACNB3P54284 484 aa21.1■□□□□ 0.97
VRK3-225ENST00000601912 CCT2P78371 535 aaKnown RBP21.1■□□□□ 0.97
VRK3-225ENST00000601912 CCDC178Q5BJE1 867 aa21.1■□□□□ 0.97
VRK3-225ENST00000601912 FAM47AQ5JRC9 791 aa21.1■□□□□ 0.97
VRK3-225ENST00000601912 TFAP4Q01664 338 aa21.09■□□□□ 0.97
VRK3-225ENST00000601912 TCP10Q12799 353 aa21.09■□□□□ 0.97
VRK3-225ENST00000601912 FAM198AQ9UFP1 575 aa21.09■□□□□ 0.97
VRK3-225ENST00000601912 SWAP70Q9UH65 585 aa21.09■□□□□ 0.97
VRK3-225ENST00000601912 SERPINB13Q9UIV8 391 aa21.09■□□□□ 0.97
VRK3-225ENST00000601912 ZBTB43O43298 467 aa21.09■□□□□ 0.97
VRK3-225ENST00000601912 TSPY3P0CV98 308 aa21.09■□□□□ 0.97
VRK3-225ENST00000601912 TSPY8P0CW00 308 aa21.09■□□□□ 0.97
VRK3-225ENST00000601912 GJB2P29033 226 aa21.09■□□□□ 0.97
VRK3-225ENST00000601912 SEC23AQ15436 765 aa21.09■□□□□ 0.97
VRK3-225ENST00000601912 IFIT1BQ5T764 474 aaKnown RBP21.09■□□□□ 0.97
VRK3-225ENST00000601912 APOA5Q6Q788 366 aa21.09■□□□□ 0.97
VRK3-225ENST00000601912 ZSCAN29Q8IWY8 852 aaPredicted RBP21.09■□□□□ 0.97
VRK3-225ENST00000601912 SLC44A5Q8NCS7 719 aa21.09■□□□□ 0.97
VRK3-225ENST00000601912 MYOZ2Q9NPC6 264 aa21.09■□□□□ 0.97
VRK3-225ENST00000601912 TAOK2Q9UL54 1235 aa21.09■□□□□ 0.97
VRK3-225ENST00000601912 GMPSP49915 693 aaPredicted RBP21.08■□□□□ 0.96
VRK3-225ENST00000601912 ZNF280AP59817 542 aaPredicted RBP21.08■□□□□ 0.96
VRK3-225ENST00000601912 ENAHQ8N8S7 591 aaPredicted RBP21.08■□□□□ 0.96
VRK3-225ENST00000601912 EHD4Q9H223 541 aa21.08■□□□□ 0.96
VRK3-225ENST00000601912 SENP2Q9HC62 589 aa21.08■□□□□ 0.96
VRK3-225ENST00000601912 PI4KBQ9UBF8 816 aa21.08■□□□□ 0.96
VRK3-225ENST00000601912 ZNF70Q9UC06 446 aaPredicted RBP21.08■□□□□ 0.96
VRK3-225ENST00000601912 YBX3P16989 372 aaKnown RBP eCLIP21.07■□□□□ 0.964e-7■■□□□ 11.9
VRK3-225ENST00000601912 RASA1P20936 1047 aa21.07■□□□□ 0.96
VRK3-225ENST00000601912 METAP2P50579 478 aaKnown RBP eCLIP21.07■□□□□ 0.96
VRK3-225ENST00000601912 GABPAQ06546 454 aa21.07■□□□□ 0.96
VRK3-225ENST00000601912 RAB3GAP1Q15042 981 aa21.07■□□□□ 0.96
VRK3-225ENST00000601912 SPDYE2Q495Y8 402 aa21.07■□□□□ 0.96
VRK3-225ENST00000601912 HPS5Q9UPZ3 1129 aa21.07■□□□□ 0.96
VRK3-225ENST00000601912 CPLX1O14810 134 aa21.06■□□□□ 0.96
VRK3-225ENST00000601912 PDIA4P13667 645 aaKnown RBP21.06■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms