RNA–Protein interactions for RNA: ENST00000600117.1

CCDC9-205, Transcript of coiled-coil domain containing 9, humanhuman

TSL 2

Gene CCDC9, Length 580 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9-205ENST00000600117 ENTPD3O75355 529 aa22.62■■□□□ 1.21
CCDC9-205ENST00000600117 TNFAIP1Q13829 316 aa22.62■■□□□ 1.21
CCDC9-205ENST00000600117 RASA3Q14644 834 aa22.62■■□□□ 1.21
CCDC9-205ENST00000600117 MCMDC2Q4G0Z9 681 aa22.62■■□□□ 1.21
CCDC9-205ENST00000600117 SPRYD7Q5W111 196 aa22.62■■□□□ 1.21
CCDC9-205ENST00000600117 CWC27Q6UX04 472 aaKnown RBP22.62■■□□□ 1.21
CCDC9-205ENST00000600117 ZFPM1Q8IX07 1006 aa22.62■■□□□ 1.21
CCDC9-205ENST00000600117 TGFBRAP1Q8WUH2 860 aa22.62■■□□□ 1.21
CCDC9-205ENST00000600117 CRNKL1Q9BZJ0 848 aaKnown RBP22.62■■□□□ 1.21
CCDC9-205ENST00000600117 DEFB129Q9H1M3 183 aa22.62■■□□□ 1.21
CCDC9-205ENST00000600117 IL25Q9H293 177 aa22.62■■□□□ 1.21
CCDC9-205ENST00000600117 FLT1P17948 1338 aa22.61■■□□□ 1.21
CCDC9-205ENST00000600117 POTEFA5A3E0 1075 aa22.61■■□□□ 1.21
CCDC9-205ENST00000600117 TNNI2P48788 182 aa22.61■■□□□ 1.21
CCDC9-205ENST00000600117 PICALMQ13492 652 aa22.61■■□□□ 1.21
CCDC9-205ENST00000600117 DDX60LQ5H9U9 1706 aaKnown RBP22.61■■□□□ 1.21
CCDC9-205ENST00000600117 LDLRAD1Q5T700 205 aa22.61■■□□□ 1.21
CCDC9-205ENST00000600117 OTOP1Q7RTM1 612 aa22.61■■□□□ 1.21
CCDC9-205ENST00000600117 ZNF589Q86UQ0 364 aaPredicted RBP22.61■■□□□ 1.21
CCDC9-205ENST00000600117 FAM151AQ8WW52 585 aa22.61■■□□□ 1.21
CCDC9-205ENST00000600117 TRIM17Q9Y577 477 aa22.61■■□□□ 1.21
CCDC9-205ENST00000600117 PPP2R3BQ9Y5P8 575 aa22.61■■□□□ 1.21
CCDC9-205ENST00000600117 INHBEP58166 350 aa22.6■■□□□ 1.21
CCDC9-205ENST00000600117 TCP10Q12799 353 aa22.6■■□□□ 1.21
CCDC9-205ENST00000600117 MAPKAPK5Q8IW41 473 aa22.6■■□□□ 1.21
CCDC9-205ENST00000600117 SDR42E1Q8WUS8 393 aa22.6■■□□□ 1.21
CCDC9-205ENST00000600117 TEPSINQ96N21 525 aa22.6■■□□□ 1.21
CCDC9-205ENST00000600117 TMEM39BQ9GZU3 492 aa22.6■■□□□ 1.21
CCDC9-205ENST00000600117 OSBPL5Q9H0X9 879 aaPredicted RBP22.6■■□□□ 1.21
CCDC9-205ENST00000600117 RPAP1Q9BWH6 1393 aaPredicted RBP22.6■■□□□ 1.21
CCDC9-205ENST00000600117 COL2A1P02458 1487 aaPredicted RBP22.6■■□□□ 1.21
CCDC9-205ENST00000600117 SZT2Q5T011 3432 aa22.59■■□□□ 1.21
CCDC9-205ENST00000600117 LAMB1P07942 1786 aa22.59■■□□□ 1.21
CCDC9-205ENST00000600117 MANSC4A6NHS7 340 aaPredicted RBP22.59■■□□□ 1.21
CCDC9-205ENST00000600117 FOXP2O15409 715 aa22.59■■□□□ 1.21
CCDC9-205ENST00000600117 CDC45O75419 566 aa22.59■■□□□ 1.21
CCDC9-205ENST00000600117 SH3BP5LQ7L8J4 393 aa22.59■■□□□ 1.21
CCDC9-205ENST00000600117 CDAN1Q8IWY9 1227 aa22.59■■□□□ 1.21
CCDC9-205ENST00000600117 SLC4A4Q9Y6R1 1079 aa22.59■■□□□ 1.21
CCDC9-205ENST00000600117 NAV1Q8NEY1 1877 aa22.59■■□□□ 1.21
CCDC9-205ENST00000600117 TRIOBPQ9H2D6 2365 aa22.58■■□□□ 1.21
CCDC9-205ENST00000600117 CCDC171Q6TFL3 1326 aa22.58■■□□□ 1.21
CCDC9-205ENST00000600117 RAD50Q92878 1312 aa22.58■■□□□ 1.21
CCDC9-205ENST00000600117 GSG1L2A8MUP6 293 aa22.58■■□□□ 1.21
CCDC9-205ENST00000600117 USP5P45974 858 aa22.58■■□□□ 1.21
CCDC9-205ENST00000600117 PRKG1Q13976 671 aa22.58■■□□□ 1.21
CCDC9-205ENST00000600117 DCP1AQ9NPI6 582 aaPredicted RBP22.58■■□□□ 1.21
CCDC9-205ENST00000600117 MYH1P12882 1939 aa22.57■■□□□ 1.2
CCDC9-205ENST00000600117 SGSM2O43147 1006 aa22.57■■□□□ 1.2
CCDC9-205ENST00000600117 GNAT2P19087 354 aa22.57■■□□□ 1.2
CCDC9-205ENST00000600117 FXR1P51114 621 aaKnown RBP eCLIP22.57■■□□□ 1.2
CCDC9-205ENST00000600117 IFNL1Q8IU54 200 aa22.57■■□□□ 1.2
CCDC9-205ENST00000600117 EPB41L4AQ9HCS5 686 aaPredicted RBP22.57■■□□□ 1.2
CCDC9-205ENST00000600117 ATP8A2Q9NTI2 1148 aa22.57■■□□□ 1.2
CCDC9-205ENST00000600117 ANGEL1Q9UNK9 670 aaKnown RBP22.57■■□□□ 1.2
CCDC9-205ENST00000600117 ATRNL1Q5VV63 1379 aa22.57■■□□□ 1.2
CCDC9-205ENST00000600117 SSC5DA1L4H1 1573 aa22.57■■□□□ 1.2
CCDC9-205ENST00000600117 DDTLA6NHG4 134 aaPredicted RBP22.56■■□□□ 1.2
CCDC9-205ENST00000600117 VPS53Q5VIR6 699 aa22.56■■□□□ 1.2
CCDC9-205ENST00000600117 RUFY2Q8WXA3 655 aa22.56■■□□□ 1.2
CCDC9-205ENST00000600117 BAZ2AQ9UIF9 1905 aaKnown RBP22.56■■□□□ 1.2
CCDC9-205ENST00000600117 SIPA1L1O43166 1804 aa22.55■■□□□ 1.2
CCDC9-205ENST00000600117 PATL2C9JE40 543 aaKnown RBP22.55■■□□□ 1.2
CCDC9-205ENST00000600117 ZBTB48P10074 688 aaPredicted RBP22.55■■□□□ 1.2
CCDC9-205ENST00000600117 NBPF12Q5TAG4 269 aaPredicted RBP22.55■■□□□ 1.2
CCDC9-205ENST00000600117 ERO1AQ96HE7 468 aa22.55■■□□□ 1.2
CCDC9-205ENST00000600117 ESYT1Q9BSJ8 1104 aa22.55■■□□□ 1.2
CCDC9-205ENST00000600117 SAP30BPQ9UHR5 308 aaKnown RBP22.55■■□□□ 1.2
CCDC9-205ENST00000600117 PTPN22Q9Y2R2 807 aa22.55■■□□□ 1.2
CCDC9-205ENST00000600117 MFAP1P55081 439 aaKnown RBP22.54■■□□□ 1.2
CCDC9-205ENST00000600117 GIMAP6Q6P9H5 292 aa22.54■■□□□ 1.2
CCDC9-205ENST00000600117 ARMC5Q96C12 935 aa22.54■■□□□ 1.2
CCDC9-205ENST00000600117 SLC10A4Q96EP9 437 aa22.54■■□□□ 1.2
CCDC9-205ENST00000600117 PALD1Q9ULE6 856 aa22.54■■□□□ 1.2
CCDC9-205ENST00000600117 HSPD1P10809 573 aaKnown RBP22.53■■□□□ 1.2
CCDC9-205ENST00000600117 MAP3K11Q16584 847 aa22.53■■□□□ 1.2
CCDC9-205ENST00000600117 IFNL3Q8IZI9 196 aa22.53■■□□□ 1.2
CCDC9-205ENST00000600117 MCM9Q9NXL9 1143 aa22.53■■□□□ 1.2
CCDC9-205ENST00000600117 RANBP2P49792 3224 aaKnown RBP22.53■■□□□ 1.2
CCDC9-205ENST00000600117 IGF2BP3O00425 579 aaKnown RBP eCLIP22.52■■□□□ 1.2
CCDC9-205ENST00000600117 ZSCAN29Q8IWY8 852 aaPredicted RBP22.52■■□□□ 1.2
CCDC9-205ENST00000600117 DHX36Q9H2U1 1008 aaKnown RBP22.52■■□□□ 1.2
CCDC9-205ENST00000600117 UNCXA6NJT0 531 aa22.51■■□□□ 1.19
CCDC9-205ENST00000600117 APPP05067 770 aa22.51■■□□□ 1.19
CCDC9-205ENST00000600117 CYP2D6P10635 497 aa22.51■■□□□ 1.19
CCDC9-205ENST00000600117 EN2P19622 333 aaPredicted RBP22.51■■□□□ 1.19
CCDC9-205ENST00000600117 EVX2Q03828 476 aa22.51■■□□□ 1.19
CCDC9-205ENST00000600117 ALX1Q15699 326 aa22.51■■□□□ 1.19
CCDC9-205ENST00000600117 SUPT20HL1Q3ZLR7 823 aa22.51■■□□□ 1.19
CCDC9-205ENST00000600117 CASC1Q6TDU7 716 aa22.51■■□□□ 1.19
CCDC9-205ENST00000600117 WNK4Q96J92 1243 aa22.51■■□□□ 1.19
CCDC9-205ENST00000600117 FZD1Q9UP38 647 aa22.51■■□□□ 1.19
CCDC9-205ENST00000600117 USP17L12C9JPN9 530 aa22.5■■□□□ 1.19
CCDC9-205ENST00000600117 USP17L21D6R901 530 aa22.5■■□□□ 1.19
CCDC9-205ENST00000600117 SLURP2P0DP57 97 aa22.5■■□□□ 1.19
CCDC9-205ENST00000600117 SLC4A8Q2Y0W8 1093 aa22.5■■□□□ 1.19
CCDC9-205ENST00000600117 SBK1Q52WX2 424 aa22.5■■□□□ 1.19
CCDC9-205ENST00000600117 CTR9Q6PD62 1173 aa22.5■■□□□ 1.19
CCDC9-205ENST00000600117 CD99L2Q8TCZ2 262 aa22.5■■□□□ 1.19
CCDC9-205ENST00000600117 DSCC1Q9BVC3 393 aa22.5■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms