RNA–Protein interactions for RNA: ENST00000597901.1

LIG1-215, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-215ENST00000597901 PRRT2Q7Z6L0 340 aaPredicted RBP18.35■□□□□ 0.53
LIG1-215ENST00000597901 MIGA1Q8NAN2 632 aa18.35■□□□□ 0.53
LIG1-215ENST00000597901 PPIL4Q8WUA2 492 aaKnown RBP eCLIP18.35■□□□□ 0.53
LIG1-215ENST00000597901 FRMD4AQ9P2Q2 1039 aaPredicted RBP18.35■□□□□ 0.53
LIG1-215ENST00000597901 HERC5Q9UII4 1024 aaKnown RBP18.35■□□□□ 0.53
LIG1-215ENST00000597901 PALD1Q9ULE6 856 aa18.35■□□□□ 0.53
LIG1-215ENST00000597901 CAP2P40123 477 aa18.34■□□□□ 0.53
LIG1-215ENST00000597901 TTF1Q15361 905 aaPredicted RBP18.34■□□□□ 0.53
LIG1-215ENST00000597901 CCDC84Q86UT8 332 aaPredicted RBP18.34■□□□□ 0.53
LIG1-215ENST00000597901 CPA4Q9UI42 421 aa18.34■□□□□ 0.53
LIG1-215ENST00000597901 COL2A1P02458 1487 aaPredicted RBP18.33■□□□□ 0.53
LIG1-215ENST00000597901 FLT1P17948 1338 aa18.33■□□□□ 0.53
LIG1-215ENST00000597901 TRIM75PA6NK02 468 aa18.33■□□□□ 0.52
LIG1-215ENST00000597901 GADL1Q6ZQY3 521 aa18.33■□□□□ 0.52
LIG1-215ENST00000597901 METTL16Q86W50 562 aaKnown RBP18.33■□□□□ 0.52
LIG1-215ENST00000597901 CERS3Q8IU89 383 aa18.33■□□□□ 0.52
LIG1-215ENST00000597901 SAP30BPQ9UHR5 308 aaKnown RBP18.33■□□□□ 0.52
LIG1-215ENST00000597901 AK9Q5TCS8 1911 aa18.33■□□□□ 0.52
LIG1-215ENST00000597901 GOLIM4O00461 696 aa18.32■□□□□ 0.52
LIG1-215ENST00000597901 LACTBP83111 547 aaPredicted RBP18.32■□□□□ 0.52
LIG1-215ENST00000597901 SPP2Q13103 211 aa18.32■□□□□ 0.52
LIG1-215ENST00000597901 KIF22Q14807 665 aa18.32■□□□□ 0.52
LIG1-215ENST00000597901 SLC9C2Q5TAH2 1124 aa18.32■□□□□ 0.52
LIG1-215ENST00000597901 LAMB1P07942 1786 aa18.32■□□□□ 0.52
LIG1-215ENST00000597901 USP17L5A8MUK1 530 aa18.31■□□□□ 0.52
LIG1-215ENST00000597901 CYP2C8P10632 490 aa18.31■□□□□ 0.52
LIG1-215ENST00000597901 ATP5JP18859 108 aa18.31■□□□□ 0.52
LIG1-215ENST00000597901 USP5P45974 858 aa18.31■□□□□ 0.52
LIG1-215ENST00000597901 CRACR2BQ8N4Y2 399 aaPredicted RBP18.31■□□□□ 0.52
LIG1-215ENST00000597901 ZNF280CQ8ND82 737 aa18.31■□□□□ 0.52
LIG1-215ENST00000597901 DNAJC2Q99543 621 aaKnown RBP18.31■□□□□ 0.52
LIG1-215ENST00000597901 LRRCC1Q9C099 1032 aa18.31■□□□□ 0.52
LIG1-215ENST00000597901 ARHGAP39Q9C0H5 1083 aa18.31■□□□□ 0.52
LIG1-215ENST00000597901 BOLA2Q9H3K6 86 aa18.31■□□□□ 0.52
LIG1-215ENST00000597901 DCTPP1Q9H773 170 aa18.31■□□□□ 0.52
LIG1-215ENST00000597901 ADGRA2Q96PE1 1338 aa18.3■□□□□ 0.52
LIG1-215ENST00000597901 SMARCA5O60264 1052 aaPredicted RBP18.3■□□□□ 0.52
LIG1-215ENST00000597901 JAG1P78504 1218 aa18.3■□□□□ 0.52
LIG1-215ENST00000597901 EDC3Q96F86 508 aaKnown RBP18.3■□□□□ 0.52
LIG1-215ENST00000597901 PARK7Q99497 189 aaKnown RBP18.3■□□□□ 0.52
LIG1-215ENST00000597901 RIOK1Q9BRS2 568 aaKnown RBP18.3■□□□□ 0.52
LIG1-215ENST00000597901 SLC45A1Q9Y2W3 748 aa18.3■□□□□ 0.52
LIG1-215ENST00000597901 MAGEB6P1A0A0J9YX57 407 aa18.29■□□□□ 0.52
LIG1-215ENST00000597901 ECM2O94769 699 aaPredicted RBP18.29■□□□□ 0.52
LIG1-215ENST00000597901 GNRH1P01148 92 aa18.29■□□□□ 0.52
LIG1-215ENST00000597901 HLA-DOAP06340 250 aa18.29■□□□□ 0.52
LIG1-215ENST00000597901 PDE6AP16499 860 aa18.29■□□□□ 0.52
LIG1-215ENST00000597901 TRIM34Q9BYJ4 488 aa18.29■□□□□ 0.52
LIG1-215ENST00000597901 TBC1D2Q9BYX2 928 aa18.29■□□□□ 0.52
LIG1-215ENST00000597901 DNAJC18Q9H819 358 aa18.29■□□□□ 0.52
LIG1-215ENST00000597901 BCRP11274 1271 aa18.28■□□□□ 0.52
LIG1-215ENST00000597901 CTGFP29279 349 aa18.28■□□□□ 0.52
LIG1-215ENST00000597901 PSMC4P43686 418 aa18.28■□□□□ 0.52
LIG1-215ENST00000597901 SLC4A8Q2Y0W8 1093 aa18.28■□□□□ 0.52
LIG1-215ENST00000597901 ARMC5Q96C12 935 aa18.28■□□□□ 0.52
LIG1-215ENST00000597901 HAUS7Q99871 368 aa18.28■□□□□ 0.52
LIG1-215ENST00000597901 WDR18Q9BV38 432 aa18.28■□□□□ 0.52
LIG1-215ENST00000597901 AS3MTQ9HBK9 375 aa18.28■□□□□ 0.52
LIG1-215ENST00000597901 PAG1Q9NWQ8 432 aa18.28■□□□□ 0.52
LIG1-215ENST00000597901 PTCH2Q9Y6C5 1203 aa18.28■□□□□ 0.52
LIG1-215ENST00000597901 ZNF532Q9HCE3 1301 aa18.27■□□□□ 0.52
LIG1-215ENST00000597901 TCRBV5S4A2TA0A5A2 114 aa18.27■□□□□ 0.52
LIG1-215ENST00000597901 FMNL1O95466 1100 aaPredicted RBP18.27■□□□□ 0.52
LIG1-215ENST00000597901 ASNSP08243 561 aa18.27■□□□□ 0.52
LIG1-215ENST00000597901 TREML2Q5T2D2 321 aa18.27■□□□□ 0.52
LIG1-215ENST00000597901 TTC6Q86TZ1 520 aa18.27■□□□□ 0.52
LIG1-215ENST00000597901 PROCA1Q8NCQ7 364 aaPredicted RBP18.27■□□□□ 0.52
LIG1-215ENST00000597901 TRIM47Q96LD4 638 aa18.27■□□□□ 0.52
LIG1-215ENST00000597901 GINM1Q9NU53 330 aa18.27■□□□□ 0.52
LIG1-215ENST00000597901 AGTPBP1Q9UPW5 1226 aa18.27■□□□□ 0.52
LIG1-215ENST00000597901 HMGCS2P54868 508 aa18.26■□□□□ 0.51
LIG1-215ENST00000597901 PRMT2P55345 433 aa18.26■□□□□ 0.51
LIG1-215ENST00000597901 SH3D19Q5HYK7 790 aa18.26■□□□□ 0.51
LIG1-215ENST00000597901 NBPF11Q86T75 865 aa18.26■□□□□ 0.51
LIG1-215ENST00000597901 PCDHB15Q9Y5E8 787 aa18.26■□□□□ 0.51
LIG1-215ENST00000597901 GDF11O95390 407 aa18.25■□□□□ 0.51
LIG1-215ENST00000597901 HOXD10P28358 340 aa18.25■□□□□ 0.51
LIG1-215ENST00000597901 PLCD1P51178 756 aa18.25■□□□□ 0.51
LIG1-215ENST00000597901 BACE1P56817 501 aa18.25■□□□□ 0.51
LIG1-215ENST00000597901 SHROOM1Q2M3G4 852 aaPredicted RBP18.25■□□□□ 0.51
LIG1-215ENST00000597901 SLFNL1Q499Z3 407 aa18.25■□□□□ 0.51
LIG1-215ENST00000597901 TATDN1Q6P1N9 297 aa18.25■□□□□ 0.51
LIG1-215ENST00000597901 YTHDC1Q96MU7 727 aaKnown RBP18.25■□□□□ 0.51
LIG1-215ENST00000597901 CRNKL1Q9BZJ0 848 aaKnown RBP18.25■□□□□ 0.51
LIG1-215ENST00000597901 SRRDQ9UH36 339 aa18.25■□□□□ 0.51
LIG1-215ENST00000597901 SERPINB13Q9UIV8 391 aa18.25■□□□□ 0.51
LIG1-215ENST00000597901 DOCK2Q92608 1830 aa18.24■□□□□ 0.51
LIG1-215ENST00000597901 POLR3DP05423 398 aaPredicted RBP18.24■□□□□ 0.51
LIG1-215ENST00000597901 OSBPP22059 807 aa18.24■□□□□ 0.51
LIG1-215ENST00000597901 ADD2P35612 726 aa18.24■□□□□ 0.51
LIG1-215ENST00000597901 RRP1P56182 461 aaKnown RBP18.24■□□□□ 0.51
LIG1-215ENST00000597901 SLC9C1Q4G0N8 1177 aa18.24■□□□□ 0.51
LIG1-215ENST00000597901 SMCR8Q8TEV9 937 aaPredicted RBP18.24■□□□□ 0.51
LIG1-215ENST00000597901 EHD4Q9H223 541 aa18.24■□□□□ 0.51
LIG1-215ENST00000597901 ECHDC1Q9NTX5 307 aa18.24■□□□□ 0.51
LIG1-215ENST00000597901 ZBTB21Q9ULJ3 1066 aa18.24■□□□□ 0.51
LIG1-215ENST00000597901 POTEFA5A3E0 1075 aa18.23■□□□□ 0.51
LIG1-215ENST00000597901 C19orf81C9J6K1 198 aa18.23■□□□□ 0.51
LIG1-215ENST00000597901 PABPC4Q13310 644 aaKnown RBP eCLIP18.23■□□□□ 0.51
LIG1-215ENST00000597901 LCORLQ8N3X6 602 aa18.23■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms