RNA–Protein interactions for RNA: ENST00000588745.5

SMAD4-205, Transcript of SMAD family member 4, humanhuman

TSL 5 BASIC

Gene SMAD4, Length 1,371 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-205ENST00000588745 USP40Q9NVE5 1235 aa13.4□□□□□ -0.26
SMAD4-205ENST00000588745 SAP30BPQ9UHR5 308 aaKnown RBP13.4□□□□□ -0.26
SMAD4-205ENST00000588745 ZDHHC9Q9Y397 364 aa13.4□□□□□ -0.26
SMAD4-205ENST00000588745 NID2Q14112 1375 aa13.4□□□□□ -0.26
SMAD4-205ENST00000588745 ERICH2A1L162 156 aa13.39□□□□□ -0.27
SMAD4-205ENST00000588745 RANBP6O60518 1105 aaKnown RBP13.39□□□□□ -0.27
SMAD4-205ENST00000588745 RAD17O75943 681 aa13.39□□□□□ -0.27
SMAD4-205ENST00000588745 VIL1P09327 827 aaKnown RBP13.39□□□□□ -0.27
SMAD4-205ENST00000588745 CCT2P78371 535 aaKnown RBP13.39□□□□□ -0.27
SMAD4-205ENST00000588745 WTAPQ15007 396 aa13.39□□□□□ -0.27
SMAD4-205ENST00000588745 SLC4A8Q2Y0W8 1093 aa13.39□□□□□ -0.27
SMAD4-205ENST00000588745 APOA5Q6Q788 366 aa13.39□□□□□ -0.27
SMAD4-205ENST00000588745 NFXL1Q6ZNB6 911 aa13.39□□□□□ -0.27
SMAD4-205ENST00000588745 NSUN7Q8NE18 718 aaKnown RBP13.39□□□□□ -0.27
SMAD4-205ENST00000588745 SMARCC2Q8TAQ2 1214 aa13.39□□□□□ -0.27
SMAD4-205ENST00000588745 SENP2Q9HC62 589 aa13.39□□□□□ -0.27
SMAD4-205ENST00000588745 HPS5Q9UPZ3 1129 aa13.39□□□□□ -0.27
SMAD4-205ENST00000588745 TNKSO95271 1327 aa13.38□□□□□ -0.27
SMAD4-205ENST00000588745 WDR33Q9C0J8 1336 aaKnown RBP13.38□□□□□ -0.27
SMAD4-205ENST00000588745 CCDC69A6NI79 296 aa13.38□□□□□ -0.27
SMAD4-205ENST00000588745 JAK2O60674 1132 aa13.38□□□□□ -0.27
SMAD4-205ENST00000588745 SYT1P21579 422 aa13.38□□□□□ -0.27
SMAD4-205ENST00000588745 PLCD1P51178 756 aa13.38□□□□□ -0.27
SMAD4-205ENST00000588745 RBM5P52756 815 aaKnown RBP eCLIP13.38□□□□□ -0.27
SMAD4-205ENST00000588745 PICALMQ13492 652 aa13.38□□□□□ -0.27
SMAD4-205ENST00000588745 NBR1Q14596 966 aa13.38□□□□□ -0.27
SMAD4-205ENST00000588745 SEC23AQ15436 765 aa13.38□□□□□ -0.27
SMAD4-205ENST00000588745 IQCA1Q86XH1 822 aa13.38□□□□□ -0.27
SMAD4-205ENST00000588745 JDP2Q8WYK2 163 aa13.38□□□□□ -0.27
SMAD4-205ENST00000588745 DYNLL2Q96FJ2 89 aa13.38□□□□□ -0.27
SMAD4-205ENST00000588745 GBP4Q96PP9 640 aa13.38□□□□□ -0.27
SMAD4-205ENST00000588745 ZSCAN10Q96SZ4 725 aaPredicted RBP13.38□□□□□ -0.27
SMAD4-205ENST00000588745 GMLQ99445 158 aa13.38□□□□□ -0.27
SMAD4-205ENST00000588745 ZKSCAN3Q9BRR0 538 aa13.38□□□□□ -0.27
SMAD4-205ENST00000588745 NCOA5Q9HCD5 579 aaKnown RBP13.38□□□□□ -0.27
SMAD4-205ENST00000588745 DDX4Q9NQI0 724 aaKnown RBP13.38□□□□□ -0.27
SMAD4-205ENST00000588745 PTPDC1A2A3K4 754 aa13.37□□□□□ -0.27
SMAD4-205ENST00000588745 ZBTB43O43298 467 aa13.37□□□□□ -0.27
SMAD4-205ENST00000588745 STX6O43752 255 aa13.37□□□□□ -0.27
SMAD4-205ENST00000588745 DHX16O60231 1041 aaKnown RBP13.37□□□□□ -0.27
SMAD4-205ENST00000588745 CTDNEP1O95476 244 aa13.37□□□□□ -0.27
SMAD4-205ENST00000588745 PDCP20941 246 aa13.37□□□□□ -0.27
SMAD4-205ENST00000588745 METAP2P50579 478 aaKnown RBP eCLIP13.37□□□□□ -0.27
SMAD4-205ENST00000588745 RCAN1P53805 252 aa13.37□□□□□ -0.27
SMAD4-205ENST00000588745 HMGN5P82970 282 aaKnown RBP13.37□□□□□ -0.27
SMAD4-205ENST00000588745 RASSF7Q02833 373 aa13.37□□□□□ -0.27
SMAD4-205ENST00000588745 CFAP100Q494V2 611 aa13.37□□□□□ -0.27
SMAD4-205ENST00000588745 C16orf86Q6ZW13 317 aa13.37□□□□□ -0.27
SMAD4-205ENST00000588745 RAB11FIP4Q86YS3 637 aa13.37□□□□□ -0.27
SMAD4-205ENST00000588745 TMTC2Q8N394 836 aa13.37□□□□□ -0.27
SMAD4-205ENST00000588745 AGBL3Q8NEM8 1001 aa13.37□□□□□ -0.27
SMAD4-205ENST00000588745 OSBPL5Q9H0X9 879 aaPredicted RBP13.37□□□□□ -0.27
SMAD4-205ENST00000588745 ZNF287Q9HBT7 754 aa13.37□□□□□ -0.27
SMAD4-205ENST00000588745 HDAC9Q9UKV0 1011 aa13.37□□□□□ -0.27
SMAD4-205ENST00000588745 PCDHAC2Q9Y5I4 1007 aa13.37□□□□□ -0.27
SMAD4-205ENST00000588745 SLC12A7Q9Y666 1083 aa13.37□□□□□ -0.27
SMAD4-205ENST00000588745 SIPA1L1O43166 1804 aa13.36□□□□□ -0.27
SMAD4-205ENST00000588745 TSPY2A6NKD2 308 aa13.36□□□□□ -0.27
SMAD4-205ENST00000588745 DTNBO60941 627 aa13.36□□□□□ -0.27
SMAD4-205ENST00000588745 PDIA4P13667 645 aaKnown RBP13.36□□□□□ -0.27
SMAD4-205ENST00000588745 CXCL9Q07325 125 aa13.36□□□□□ -0.27
SMAD4-205ENST00000588745 CIAPIN1Q6FI81 312 aa13.36□□□□□ -0.27
SMAD4-205ENST00000588745 CLEC17AQ6ZS10 378 aa13.36□□□□□ -0.27
SMAD4-205ENST00000588745 ILDR2Q71H61 639 aa13.36□□□□□ -0.27
SMAD4-205ENST00000588745 TTC6Q86TZ1 520 aa13.36□□□□□ -0.27
SMAD4-205ENST00000588745 MICU3Q86XE3 530 aa13.36□□□□□ -0.27
SMAD4-205ENST00000588745 ENAHQ8N8S7 591 aaPredicted RBP13.36□□□□□ -0.27
SMAD4-205ENST00000588745 ANP32EQ9BTT0 268 aa13.36□□□□□ -0.27
SMAD4-205ENST00000588745 IDI2Q9BXS1 227 aa13.36□□□□□ -0.27
SMAD4-205ENST00000588745 MKNK2Q9HBH9 465 aa13.36□□□□□ -0.27
SMAD4-205ENST00000588745 MYH8P13535 1937 aa13.36□□□□□ -0.27
SMAD4-205ENST00000588745 COL2A1P02458 1487 aaPredicted RBP13.35□□□□□ -0.27
SMAD4-205ENST00000588745 GOLGA8AA7E2F4 631 aa13.35□□□□□ -0.27
SMAD4-205ENST00000588745 CPLX1O14810 134 aa13.35□□□□□ -0.27
SMAD4-205ENST00000588745 NPM3O75607 178 aaKnown RBP13.35□□□□□ -0.27
SMAD4-205ENST00000588745 ZSCAN22P10073 491 aaPredicted RBP13.35□□□□□ -0.27
SMAD4-205ENST00000588745 MCM4P33991 863 aa13.35□□□□□ -0.27
SMAD4-205ENST00000588745 NFIAQ12857 509 aa13.35□□□□□ -0.27
SMAD4-205ENST00000588745 FAM47AQ5JRC9 791 aa13.35□□□□□ -0.27
SMAD4-205ENST00000588745 SYNE3Q6ZMZ3 975 aa13.35□□□□□ -0.27
SMAD4-205ENST00000588745 FAM184AQ8NB25 1140 aa13.35□□□□□ -0.27
SMAD4-205ENST00000588745 SLC44A5Q8NCS7 719 aa13.35□□□□□ -0.27
SMAD4-205ENST00000588745 DDX11Q96FC9 970 aa13.35□□□□□ -0.27
SMAD4-205ENST00000588745 FHDC1Q9C0D6 1143 aaPredicted RBP13.35□□□□□ -0.27
SMAD4-205ENST00000588745 MTMR6Q9Y217 621 aa13.35□□□□□ -0.27
SMAD4-205ENST00000588745 KIF3AQ9Y496 699 aa13.35□□□□□ -0.27
SMAD4-205ENST00000588745 DDX11L8A8MPP1 907 aa13.34□□□□□ -0.27
SMAD4-205ENST00000588745 BAG4O95429 457 aaKnown RBP13.34□□□□□ -0.27
SMAD4-205ENST00000588745 HLA-DOAP06340 250 aa13.34□□□□□ -0.27
SMAD4-205ENST00000588745 RXRAP19793 462 aa13.34□□□□□ -0.27
SMAD4-205ENST00000588745 RASA1P20936 1047 aa13.34□□□□□ -0.27
SMAD4-205ENST00000588745 CDK8P49336 464 aa13.34□□□□□ -0.27
SMAD4-205ENST00000588745 TFAP4Q01664 338 aa13.34□□□□□ -0.27
SMAD4-205ENST00000588745 IFIT1BQ5T764 474 aaKnown RBP13.34□□□□□ -0.27
SMAD4-205ENST00000588745 FOXD4L5Q5VV16 416 aaPredicted RBP13.34□□□□□ -0.27
SMAD4-205ENST00000588745 LARP1BQ659C4 914 aaKnown RBP13.34□□□□□ -0.27
SMAD4-205ENST00000588745 ZNF654Q8IZM8 581 aa13.34□□□□□ -0.27
SMAD4-205ENST00000588745 OGFOD1Q8N543 542 aa13.34□□□□□ -0.27
SMAD4-205ENST00000588745 FOXD4L4Q8WXT5 416 aaPredicted RBP13.34□□□□□ -0.27
SMAD4-205ENST00000588745 MYL10Q9BUA6 226 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms