RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 SLC45A1Q9Y2W3 748 aa8.3□□□□□ -1.08
VPS53-213ENST00000572334 MYPNQ86TC9 1320 aa8.29□□□□□ -1.08
VPS53-213ENST00000572334 TRIM75PA6NK02 468 aa8.29□□□□□ -1.08
VPS53-213ENST00000572334 IPO8O15397 1037 aaKnown RBP8.29□□□□□ -1.08
VPS53-213ENST00000572334 FMNL1O95466 1100 aaPredicted RBP8.29□□□□□ -1.08
VPS53-213ENST00000572334 CYP2E1P05181 493 aaPredicted RBP8.29□□□□□ -1.08
VPS53-213ENST00000572334 GRK4P32298 578 aa8.29□□□□□ -1.08
VPS53-213ENST00000572334 ATP8B2P98198 1209 aa8.29□□□□□ -1.08
VPS53-213ENST00000572334 SHROOM1Q2M3G4 852 aaPredicted RBP8.29□□□□□ -1.08
VPS53-213ENST00000572334 SLC4A8Q2Y0W8 1093 aa8.29□□□□□ -1.08
VPS53-213ENST00000572334 TNNI3KQ59H18 835 aa8.29□□□□□ -1.08
VPS53-213ENST00000572334 GADL1Q6ZQY3 521 aa8.29□□□□□ -1.08
VPS53-213ENST00000572334 FASTKD5Q7L8L6 764 aaKnown RBP8.29□□□□□ -1.08
VPS53-213ENST00000572334 METTL16Q86W50 562 aaKnown RBP8.29□□□□□ -1.08
VPS53-213ENST00000572334 ZSCAN29Q8IWY8 852 aaPredicted RBP8.29□□□□□ -1.08
VPS53-213ENST00000572334 SH3RF3Q8TEJ3 882 aaPredicted RBP8.29□□□□□ -1.08
VPS53-213ENST00000572334 FRAT1Q92837 279 aaPredicted RBP8.29□□□□□ -1.08
VPS53-213ENST00000572334 C1orf115Q9H7X2 142 aa8.29□□□□□ -1.08
VPS53-213ENST00000572334 GPR108Q9NPR9 543 aa8.29□□□□□ -1.08
VPS53-213ENST00000572334 PICK1Q9NRD5 415 aa8.29□□□□□ -1.08
VPS53-213ENST00000572334 SNRKQ9NRH2 765 aa8.29□□□□□ -1.08
VPS53-213ENST00000572334 FPGT-TNNI3KV9GXZ4 949 aa8.29□□□□□ -1.08
VPS53-213ENST00000572334 ZBTB7BO15156 539 aaPredicted RBP8.28□□□□□ -1.08
VPS53-213ENST00000572334 MAP4K4O95819 1239 aaPredicted RBP8.28□□□□□ -1.08
VPS53-213ENST00000572334 GJB1P08034 283 aa8.28□□□□□ -1.08
VPS53-213ENST00000572334 CCL5P13501 91 aa8.28□□□□□ -1.08
VPS53-213ENST00000572334 CAP2P40123 477 aa8.28□□□□□ -1.08
VPS53-213ENST00000572334 GJA8P48165 433 aa8.28□□□□□ -1.08
VPS53-213ENST00000572334 FXR1P51114 621 aaKnown RBP eCLIP8.28□□□□□ -1.08
VPS53-213ENST00000572334 PPP4CP60510 307 aa8.28□□□□□ -1.08
VPS53-213ENST00000572334 G3BP1Q13283 466 aaKnown RBP eCLIP8.28□□□□□ -1.08
VPS53-213ENST00000572334 ZKSCAN2Q63HK3 967 aa8.28□□□□□ -1.08
VPS53-213ENST00000572334 GCC1Q96CN9 775 aa8.28□□□□□ -1.08
VPS53-213ENST00000572334 ZNF512BQ96KM6 892 aaPredicted RBP8.28□□□□□ -1.08
VPS53-213ENST00000572334 UNC93B1Q9H1C4 597 aa8.28□□□□□ -1.08
VPS53-213ENST00000572334 XPO5Q9HAV4 1204 aaKnown RBP eCLIP8.28□□□□□ -1.08
VPS53-213ENST00000572334 TLR7Q9NYK1 1049 aaKnown RBP8.28□□□□□ -1.08
VPS53-213ENST00000572334 DBNLQ9UJU6 430 aaKnown RBP8.28□□□□□ -1.08
VPS53-213ENST00000572334 AGTPBP1Q9UPW5 1226 aa8.28□□□□□ -1.08
VPS53-213ENST00000572334 COLQQ9Y215 455 aaPredicted RBP8.28□□□□□ -1.08
VPS53-213ENST00000572334 NOP58Q9Y2X3 529 aaKnown RBP8.28□□□□□ -1.08
VPS53-213ENST00000572334 RLFQ13129 1914 aa8.27□□□□□ -1.09
VPS53-213ENST00000572334 FRMPD3Q5JV73 1810 aa8.27□□□□□ -1.09
VPS53-213ENST00000572334 H0YGN5 161 aa8.27□□□□□ -1.09
VPS53-213ENST00000572334 LDHCP07864 332 aa8.27□□□□□ -1.09
VPS53-213ENST00000572334 UQCRFS1P1P0C7P4 283 aa8.27□□□□□ -1.09
VPS53-213ENST00000572334 ELNP15502 786 aa8.27□□□□□ -1.09
VPS53-213ENST00000572334 HOXD10P28358 340 aa8.27□□□□□ -1.09
VPS53-213ENST00000572334 ZAP70P43403 619 aa8.27□□□□□ -1.09
VPS53-213ENST00000572334 FLT3LGP49771 235 aa8.27□□□□□ -1.09
VPS53-213ENST00000572334 FCGRTP55899 365 aa8.27□□□□□ -1.09
VPS53-213ENST00000572334 GSTO1P78417 241 aa8.27□□□□□ -1.09
VPS53-213ENST00000572334 SPP2Q13103 211 aa8.27□□□□□ -1.09
VPS53-213ENST00000572334 IRF5Q13568 498 aa8.27□□□□□ -1.09
VPS53-213ENST00000572334 SH3D19Q5HYK7 790 aa8.27□□□□□ -1.09
VPS53-213ENST00000572334 POTEEQ6S8J3 1075 aa8.27□□□□□ -1.09
VPS53-213ENST00000572334 TEX11Q8IYF3 940 aa8.27□□□□□ -1.09
VPS53-213ENST00000572334 ANKRD13CQ8N6S4 541 aa8.27□□□□□ -1.09
VPS53-213ENST00000572334 PROCA1Q8NCQ7 364 aaPredicted RBP8.27□□□□□ -1.09
VPS53-213ENST00000572334 ZNF280CQ8ND82 737 aa8.27□□□□□ -1.09
VPS53-213ENST00000572334 RAET1EQ8TD07 263 aa8.27□□□□□ -1.09
VPS53-213ENST00000572334 EAF2Q96CJ1 260 aaPredicted RBP8.27□□□□□ -1.09
VPS53-213ENST00000572334 PIH1D3Q9NQM4 214 aaKnown RBP8.27□□□□□ -1.09
VPS53-213ENST00000572334 AATFQ9NY61 560 aaKnown RBP eCLIP8.27□□□□□ -1.09
VPS53-213ENST00000572334 RAI14Q9P0K7 980 aa8.27□□□□□ -1.09
VPS53-213ENST00000572334 GJD2Q9UKL4 321 aa8.27□□□□□ -1.09
VPS53-213ENST00000572334 NAV1Q8NEY1 1877 aa8.27□□□□□ -1.09
VPS53-213ENST00000572334 MYH7P12883 1935 aa8.27□□□□□ -1.09
VPS53-213ENST00000572334 MYH8P13535 1937 aa8.27□□□□□ -1.09
VPS53-213ENST00000572334 FLT1P17948 1338 aa8.27□□□□□ -1.09
VPS53-213ENST00000572334 ADCY3O60266 1144 aa8.26□□□□□ -1.09
VPS53-213ENST00000572334 PEX10O60683 326 aa8.26□□□□□ -1.09
VPS53-213ENST00000572334 HMGCS2P54868 508 aa8.26□□□□□ -1.09
VPS53-213ENST00000572334 DYNLL1P63167 89 aaKnown RBP8.26□□□□□ -1.09
VPS53-213ENST00000572334 GORABQ5T7V8 394 aa8.26□□□□□ -1.09
VPS53-213ENST00000572334 DIEXFQ68CQ4 756 aaKnown RBP8.26□□□□□ -1.09
VPS53-213ENST00000572334 MAPKAPK5Q8IW41 473 aa8.26□□□□□ -1.09
VPS53-213ENST00000572334 MIER1Q8N108 512 aa8.26□□□□□ -1.09
VPS53-213ENST00000572334 SLAIN1Q8ND83 568 aa8.26□□□□□ -1.09
VPS53-213ENST00000572334 TGFBRAP1Q8WUH2 860 aa8.26□□□□□ -1.09
VPS53-213ENST00000572334 PRO3102Q9H379 93 aa8.26□□□□□ -1.09
VPS53-213ENST00000572334 LRP2BPQ9P2M1 347 aa8.26□□□□□ -1.09
VPS53-213ENST00000572334 BAZ2AQ9UIF9 1905 aaKnown RBP8.26□□□□□ -1.09
VPS53-213ENST00000572334 PARP14Q460N5 1801 aa8.26□□□□□ -1.09
VPS53-213ENST00000572334 ZNFX1Q9P2E3 1918 aaKnown RBP8.25□□□□□ -1.09
VPS53-213ENST00000572334 USP17L5A8MUK1 530 aa8.25□□□□□ -1.09
VPS53-213ENST00000572334 TNPO2O14787 897 aaKnown RBP8.25□□□□□ -1.09
VPS53-213ENST00000572334 SURF6O75683 361 aaKnown RBP8.25□□□□□ -1.09
VPS53-213ENST00000572334 SGPL1O95470 568 aa8.25□□□□□ -1.09
VPS53-213ENST00000572334 INHAP05111 366 aa8.25□□□□□ -1.09
VPS53-213ENST00000572334 FAM110CQ1W6H9 321 aa8.25□□□□□ -1.09
VPS53-213ENST00000572334 TTC39AQ5SRH9 613 aa8.25□□□□□ -1.09
VPS53-213ENST00000572334 NAA16Q6N069 864 aaPredicted RBP8.25□□□□□ -1.09
VPS53-213ENST00000572334 CEP85Q6P2H3 762 aa8.25□□□□□ -1.09
VPS53-213ENST00000572334 PXYLP1Q8TE99 480 aa8.25□□□□□ -1.09
VPS53-213ENST00000572334 U2AF1L4Q8WU68 220 aaKnown RBP8.25□□□□□ -1.09
VPS53-213ENST00000572334 WDR18Q9BV38 432 aa8.25□□□□□ -1.09
VPS53-213ENST00000572334 CCDC8Q9H0W5 538 aaPredicted RBP8.25□□□□□ -1.09
VPS53-213ENST00000572334 RNF208Q9H0X6 261 aa8.25□□□□□ -1.09
VPS53-213ENST00000572334 ASCC2Q9H1I8 757 aaPredicted RBP8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 83.7 ms