RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-238ENST00000569430 SPAG1Q07617 926 aa12.9□□□□□ -0.34
CLN3-238ENST00000569430 TTC19Q6DKK2 380 aaPredicted RBP12.9□□□□□ -0.34
CLN3-238ENST00000569430 GOLGA6AQ9NYA3 693 aa12.9□□□□□ -0.34
CLN3-238ENST00000569430 HSF2BPO75031 334 aa12.9□□□□□ -0.34
CLN3-238ENST00000569430 CASP14P31944 242 aa12.9□□□□□ -0.34
CLN3-238ENST00000569430 KIF5AQ12840 1032 aa12.9□□□□□ -0.34
CLN3-238ENST00000569430 IFT81Q8WYA0 676 aa12.9□□□□□ -0.34
CLN3-238ENST00000569430 EXOC4Q96A65 974 aa12.9□□□□□ -0.34
CLN3-238ENST00000569430 MAST3O60307 1309 aa12.9□□□□□ -0.35
CLN3-238ENST00000569430 ATP8B1O43520 1251 aa12.89□□□□□ -0.35
CLN3-238ENST00000569430 IDEP14735 1019 aa12.89□□□□□ -0.35
CLN3-238ENST00000569430 ERCC3P19447 782 aa12.89□□□□□ -0.35
CLN3-238ENST00000569430 RILPL1Q5EBL4 403 aa12.89□□□□□ -0.35
CLN3-238ENST00000569430 CATIPQ7Z7H3 387 aa12.89□□□□□ -0.35
CLN3-238ENST00000569430 ACRBPQ8NEB7 543 aa12.89□□□□□ -0.35
CLN3-238ENST00000569430 ANKRD18BA2A2Z9 1011 aa12.89□□□□□ -0.35
CLN3-238ENST00000569430 ATF3P18847 181 aa12.89□□□□□ -0.35
CLN3-238ENST00000569430 PTPN12Q05209 780 aaKnown RBP12.89□□□□□ -0.35
CLN3-238ENST00000569430 CTDSPL2Q05D32 466 aa12.89□□□□□ -0.35
CLN3-238ENST00000569430 MTF1Q14872 753 aa12.89□□□□□ -0.35
CLN3-238ENST00000569430 TAX1BP1Q86VP1 789 aa12.89□□□□□ -0.35
CLN3-238ENST00000569430 IQCA1Q86XH1 822 aa12.89□□□□□ -0.35
CLN3-238ENST00000569430 SLC4A4Q9Y6R1 1079 aa12.89□□□□□ -0.35
CLN3-238ENST00000569430 USP6P35125 1406 aa12.89□□□□□ -0.35
CLN3-238ENST00000569430 NDUFAB1O14561 156 aa12.89□□□□□ -0.35
CLN3-238ENST00000569430 MCM7P33993 719 aa12.89□□□□□ -0.35
CLN3-238ENST00000569430 PI16Q6UXB8 463 aa12.89□□□□□ -0.35
CLN3-238ENST00000569430 SND1Q7KZF4 910 aaKnown RBP eCLIP12.89□□□□□ -0.351e-7■■■□□ 15.8
CLN3-238ENST00000569430 OSBP2Q969R2 916 aa12.89□□□□□ -0.35
CLN3-238ENST00000569430 CCDC42Q96M95 316 aa12.89□□□□□ -0.35
CLN3-238ENST00000569430 PUS3Q9BZE2 481 aaKnown RBP12.89□□□□□ -0.35
CLN3-238ENST00000569430 GNL3LQ9NVN8 582 aaKnown RBP12.89□□□□□ -0.35
CLN3-238ENST00000569430 FHOD1Q9Y613 1164 aa12.89□□□□□ -0.35
CLN3-238ENST00000569430 A1BGP04217 495 aa12.88□□□□□ -0.35
CLN3-238ENST00000569430 RNASE9P60153 205 aaKnown RBP12.88□□□□□ -0.35
CLN3-238ENST00000569430 RBL2Q08999 1139 aa12.88□□□□□ -0.35
CLN3-238ENST00000569430 CEP57Q86XR8 500 aa12.88□□□□□ -0.35
CLN3-238ENST00000569430 TMTC1Q8IUR5 882 aa12.88□□□□□ -0.35
CLN3-238ENST00000569430 CABLES1Q8TDN4 633 aa12.88□□□□□ -0.35
CLN3-238ENST00000569430 CEP89Q96ST8 783 aa12.88□□□□□ -0.35
CLN3-238ENST00000569430 IGKV5-2P06315 115 aa12.88□□□□□ -0.35
CLN3-238ENST00000569430 TUBBP07437 444 aa12.88□□□□□ -0.35
CLN3-238ENST00000569430 STAT6P42226 847 aa12.88□□□□□ -0.35
CLN3-238ENST00000569430 TAF4BQ92750 862 aa12.88□□□□□ -0.35
CLN3-238ENST00000569430 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP12.88□□□□□ -0.35
CLN3-238ENST00000569430 A0A0G2JLW4 131 aa12.88□□□□□ -0.35
CLN3-238ENST00000569430 FOXN1O15353 648 aa12.88□□□□□ -0.35
CLN3-238ENST00000569430 TTF1Q15361 905 aaPredicted RBP12.88□□□□□ -0.35
CLN3-238ENST00000569430 CCDC178Q5BJE1 867 aa12.88□□□□□ -0.35
CLN3-238ENST00000569430 ZMYM1Q5SVZ6 1142 aa12.88□□□□□ -0.35
CLN3-238ENST00000569430 CYP26C1Q6V0L0 522 aa12.88□□□□□ -0.35
CLN3-238ENST00000569430 SMARCC2Q8TAQ2 1214 aa12.88□□□□□ -0.35
CLN3-238ENST00000569430 C19orf44Q9H6X5 657 aa12.88□□□□□ -0.35
CLN3-238ENST00000569430 MMRN2Q9H8L6 949 aa12.88□□□□□ -0.35
CLN3-238ENST00000569430 MKRN1Q9UHC7 482 aaKnown RBP12.88□□□□□ -0.35
CLN3-238ENST00000569430 WWC3Q9ULE0 1092 aa12.88□□□□□ -0.35
CLN3-238ENST00000569430 PTPRUQ92729 1446 aa12.88□□□□□ -0.35
CLN3-238ENST00000569430 CCDC194A0A1B0GVG4 234 aa12.88□□□□□ -0.35
CLN3-238ENST00000569430 GOLGA6BA6NDN3 693 aa12.88□□□□□ -0.35
CLN3-238ENST00000569430 M0R2C6 588 aa12.88□□□□□ -0.35
CLN3-238ENST00000569430 TUBB4BP68371 445 aa12.88□□□□□ -0.35
CLN3-238ENST00000569430 MAGEB6Q8N7X4 407 aa12.88□□□□□ -0.35
CLN3-238ENST00000569430 EHBP1Q8NDI1 1231 aa12.88□□□□□ -0.35
CLN3-238ENST00000569430 LUC7LQ9NQ29 371 aaKnown RBP12.88□□□□□ -0.35
CLN3-238ENST00000569430 MYO6Q9UM54 1294 aa12.88□□□□□ -0.35
CLN3-238ENST00000569430 GOLGA6L7A0A1B0GV03 622 aa12.87□□□□□ -0.35
CLN3-238ENST00000569430 MBD4O95243 580 aa12.87□□□□□ -0.35
CLN3-238ENST00000569430 CCT5P48643 541 aa12.87□□□□□ -0.35
CLN3-238ENST00000569430 KRT83P78385 493 aa12.87□□□□□ -0.35
CLN3-238ENST00000569430 NOSTRINQ8IVI9 506 aa12.87□□□□□ -0.35
CLN3-238ENST00000569430 AMOTL1Q8IY63 956 aa12.87□□□□□ -0.35
CLN3-238ENST00000569430 RNF41Q9H4P4 317 aaPredicted RBP12.87□□□□□ -0.35
CLN3-238ENST00000569430 PRDM11Q9NQV5 511 aa12.87□□□□□ -0.35
CLN3-238ENST00000569430 FEZ2Q9UHY8 353 aaPredicted RBP12.87□□□□□ -0.35
CLN3-238ENST00000569430 USP32Q8NFA0 1604 aa12.87□□□□□ -0.35
CLN3-238ENST00000569430 ADORA1P30542 326 aa12.87□□□□□ -0.35
CLN3-238ENST00000569430 INPP5BP32019 993 aa12.87□□□□□ -0.35
CLN3-238ENST00000569430 CASP8Q14790 479 aa12.87□□□□□ -0.35
CLN3-238ENST00000569430 NCAPH2Q6IBW4 605 aa12.87□□□□□ -0.35
CLN3-238ENST00000569430 FCHSD1Q86WN1 690 aa12.87□□□□□ -0.35
CLN3-238ENST00000569430 IQUBQ8NA54 791 aa12.87□□□□□ -0.35
CLN3-238ENST00000569430 ALS2CR12Q96Q35 445 aa12.87□□□□□ -0.35
CLN3-238ENST00000569430 ERLIN2O94905 339 aa12.87□□□□□ -0.35
CLN3-238ENST00000569430 H2AFXP16104 143 aaPredicted RBP12.87□□□□□ -0.35
CLN3-238ENST00000569430 CASP1P29466 404 aa12.87□□□□□ -0.35
CLN3-238ENST00000569430 ARID5AQ03989 594 aa12.87□□□□□ -0.35
CLN3-238ENST00000569430 KRT28Q7Z3Y7 464 aa12.87□□□□□ -0.35
CLN3-238ENST00000569430 KRT23Q9C075 422 aa12.87□□□□□ -0.35
CLN3-238ENST00000569430 ZNF446Q9NWS9 450 aa12.87□□□□□ -0.35
CLN3-238ENST00000569430 TACC1O75410 805 aa12.86□□□□□ -0.35
CLN3-238ENST00000569430 SF3A3Q12874 501 aaKnown RBP eCLIP12.86□□□□□ -0.35
CLN3-238ENST00000569430 BCAS4Q8TDM0 211 aa12.86□□□□□ -0.35
CLN3-238ENST00000569430 PLCD4Q9BRC7 762 aa12.86□□□□□ -0.35
CLN3-238ENST00000569430 VPS54Q9P1Q0 977 aa12.86□□□□□ -0.35
CLN3-238ENST00000569430 MAN1B1Q9UKM7 699 aa12.86□□□□□ -0.35
CLN3-238ENST00000569430 JRKLQ9Y4A0 524 aa12.86□□□□□ -0.35
CLN3-238ENST00000569430 V9GY48 417 aaPredicted RBP12.86□□□□□ -0.35
CLN3-238ENST00000569430 OPA1O60313 960 aa12.86□□□□□ -0.35
CLN3-238ENST00000569430 PRDM1O75626 825 aa12.86□□□□□ -0.35
CLN3-238ENST00000569430 MICALCLQ6ZW33 695 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms