RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 SAGE1Q9NXZ1 904 aa15.65■□□□□ 0.1
CLK3-224ENST00000568605 ZNF112Q9UJU3 913 aa15.65■□□□□ 0.1
CLK3-224ENST00000568605 SNCAIPQ9Y6H5 919 aa15.65■□□□□ 0.1
CLK3-224ENST00000568605 MYH4Q9Y623 1939 aa15.64■□□□□ 0.09
CLK3-224ENST00000568605 INHBEP58166 350 aa15.64■□□□□ 0.09
CLK3-224ENST00000568605 TTC6Q86TZ1 520 aa15.64■□□□□ 0.09
CLK3-224ENST00000568605 SCYL3Q8IZE3 742 aa15.64■□□□□ 0.09
CLK3-224ENST00000568605 LCORLQ8N3X6 602 aa15.64■□□□□ 0.09
CLK3-224ENST00000568605 APPBP2Q92624 585 aa15.64■□□□□ 0.09
CLK3-224ENST00000568605 ZKSCAN4Q969J2 545 aaPredicted RBP15.64■□□□□ 0.09
CLK3-224ENST00000568605 EVI5LQ96CN4 794 aa15.64■□□□□ 0.09
CLK3-224ENST00000568605 OTUD5Q96G74 571 aa15.64■□□□□ 0.09
CLK3-224ENST00000568605 RNF113AO15541 343 aaKnown RBP15.63■□□□□ 0.09
CLK3-224ENST00000568605 CTNND1O60716 968 aaKnown RBP15.63■□□□□ 0.09
CLK3-224ENST00000568605 INPP5BP32019 993 aa15.63■□□□□ 0.09
CLK3-224ENST00000568605 GTF2A2P52657 109 aa15.63■□□□□ 0.09
CLK3-224ENST00000568605 MAP3K10Q02779 954 aa15.63■□□□□ 0.09
CLK3-224ENST00000568605 PPIL2Q13356 520 aa15.63■□□□□ 0.09
CLK3-224ENST00000568605 OTUD7BQ6GQQ9 843 aa15.63■□□□□ 0.09
CLK3-224ENST00000568605 TICAM2Q86XR7 235 aa15.63■□□□□ 0.09
CLK3-224ENST00000568605 ZIC5Q96T25 663 aa15.63■□□□□ 0.09
CLK3-224ENST00000568605 ARMT1Q9H993 441 aa15.63■□□□□ 0.09
CLK3-224ENST00000568605 ATP8A2Q9NTI2 1148 aa15.63■□□□□ 0.09
CLK3-224ENST00000568605 SAP30BPQ9UHR5 308 aaKnown RBP15.63■□□□□ 0.09
CLK3-224ENST00000568605 MGAMO43451 1857 aa15.63■□□□□ 0.09
CLK3-224ENST00000568605 FOXN1O15353 648 aa15.62■□□□□ 0.09
CLK3-224ENST00000568605 ALDH1A1P00352 501 aa15.62■□□□□ 0.09
CLK3-224ENST00000568605 PPATQ06203 517 aa15.62■□□□□ 0.09
CLK3-224ENST00000568605 FOXP4Q8IVH2 680 aaPredicted RBP15.62■□□□□ 0.09
CLK3-224ENST00000568605 EHD4Q9H223 541 aa15.62■□□□□ 0.09
CLK3-224ENST00000568605 PALD1Q9ULE6 856 aa15.62■□□□□ 0.09
CLK3-224ENST00000568605 GREB1LQ9C091 1923 aaPredicted RBP15.61■□□□□ 0.09
CLK3-224ENST00000568605 PHF20L1A8MW92 1017 aa15.61■□□□□ 0.09
CLK3-224ENST00000568605 TRIM6-TRIM34B2RNG4 842 aa15.61■□□□□ 0.09
CLK3-224ENST00000568605 POLR3DP05423 398 aaPredicted RBP15.61■□□□□ 0.09
CLK3-224ENST00000568605 TM4SF4P48230 202 aa15.61■□□□□ 0.09
CLK3-224ENST00000568605 SDR42E1Q8WUS8 393 aa15.61■□□□□ 0.09
CLK3-224ENST00000568605 TBC1D2Q9BYX2 928 aa15.61■□□□□ 0.09
CLK3-224ENST00000568605 OSBPL3Q9H4L5 887 aa15.61■□□□□ 0.09
CLK3-224ENST00000568605 MCM9Q9NXL9 1143 aa15.61■□□□□ 0.09
CLK3-224ENST00000568605 SERPINB13Q9UIV8 391 aa15.61■□□□□ 0.09
CLK3-224ENST00000568605 TAOK2Q9UL54 1235 aa15.61■□□□□ 0.09
CLK3-224ENST00000568605 FAM196BA6NMK8 535 aa15.6■□□□□ 0.09
CLK3-224ENST00000568605 GNAT2P19087 354 aa15.6■□□□□ 0.09
CLK3-224ENST00000568605 GJA5P36382 358 aa15.6■□□□□ 0.09
CLK3-224ENST00000568605 SNAPC2Q13487 334 aa15.6■□□□□ 0.09
CLK3-224ENST00000568605 SLC4A8Q2Y0W8 1093 aa15.6■□□□□ 0.09
CLK3-224ENST00000568605 PUS7LQ9H0K6 701 aaKnown RBP15.6■□□□□ 0.09
CLK3-224ENST00000568605 DCP1AQ9NPI6 582 aaPredicted RBP15.6■□□□□ 0.09
CLK3-224ENST00000568605 GINM1Q9NU53 330 aa15.6■□□□□ 0.09
CLK3-224ENST00000568605 SLC4A4Q9Y6R1 1079 aa15.6■□□□□ 0.09
CLK3-224ENST00000568605 CCL15-CCL14A0A0B4J2E2 113 aa15.59■□□□□ 0.09
CLK3-224ENST00000568605 GPAA1O43292 621 aa15.59■□□□□ 0.09
CLK3-224ENST00000568605 ASNSP08243 561 aa15.59■□□□□ 0.09
CLK3-224ENST00000568605 HSPA8P11142 646 aaKnown RBP15.59■□□□□ 0.09
CLK3-224ENST00000568605 CETPP11597 493 aa15.59■□□□□ 0.09
CLK3-224ENST00000568605 CCL15Q16663 113 aa15.59■□□□□ 0.09
CLK3-224ENST00000568605 METTL16Q86W50 562 aaKnown RBP15.59■□□□□ 0.09
CLK3-224ENST00000568605 PLEKHM2Q8IWE5 1019 aa15.59■□□□□ 0.09
CLK3-224ENST00000568605 CNKSR2Q8WXI2 1034 aa15.59■□□□□ 0.09
CLK3-224ENST00000568605 RNF186Q9NXI6 227 aa15.59■□□□□ 0.09
CLK3-224ENST00000568605 ARPP21Q9UBL0 812 aaPredicted RBP15.59■□□□□ 0.09
CLK3-224ENST00000568605 IRF6O14896 467 aa15.58■□□□□ 0.08
CLK3-224ENST00000568605 TRPA1O75762 1119 aa15.58■□□□□ 0.08
CLK3-224ENST00000568605 CAP2P40123 477 aa15.58■□□□□ 0.08
CLK3-224ENST00000568605 SLFNL1Q499Z3 407 aa15.58■□□□□ 0.08
CLK3-224ENST00000568605 CENPQQ7L2Z9 268 aaPredicted RBP15.58■□□□□ 0.08
CLK3-224ENST00000568605 IFNL1Q8IU54 200 aa15.58■□□□□ 0.08
CLK3-224ENST00000568605 RILPL2Q969X0 211 aa15.58■□□□□ 0.08
CLK3-224ENST00000568605 AS3MTQ9HBK9 375 aa15.58■□□□□ 0.08
CLK3-224ENST00000568605 PRDM10Q9NQV6 1147 aa15.58■□□□□ 0.08
CLK3-224ENST00000568605 PARP14Q460N5 1801 aa15.57■□□□□ 0.08
CLK3-224ENST00000568605 TESPA1A2RU30 521 aaPredicted RBP15.57■□□□□ 0.08
CLK3-224ENST00000568605 CHGBP05060 677 aa15.57■□□□□ 0.08
CLK3-224ENST00000568605 PTPRAP18433 802 aa15.57■□□□□ 0.08
CLK3-224ENST00000568605 LBX1P52954 281 aa15.57■□□□□ 0.08
CLK3-224ENST00000568605 ZMYM1Q5SVZ6 1142 aa15.57■□□□□ 0.08
CLK3-224ENST00000568605 GIMAP6Q6P9H5 292 aa15.57■□□□□ 0.08
CLK3-224ENST00000568605 OSBP2Q969R2 916 aa15.57■□□□□ 0.08
CLK3-224ENST00000568605 STRBPQ96SI9 672 aaKnown RBP15.57■□□□□ 0.08
CLK3-224ENST00000568605 NACAP1Q9BZK3 213 aa15.57■□□□□ 0.08
CLK3-224ENST00000568605 DNAJC18Q9H819 358 aa15.57■□□□□ 0.08
CLK3-224ENST00000568605 ZCCHC17Q9NP64 241 aaKnown RBP15.57■□□□□ 0.08
CLK3-224ENST00000568605 SWAP70Q9UH65 585 aa15.57■□□□□ 0.08
CLK3-224ENST00000568605 KCNH4Q9UQ05 1017 aa15.57■□□□□ 0.08
CLK3-224ENST00000568605 M0R2C6 588 aa15.56■□□□□ 0.08
CLK3-224ENST00000568605 HIP1O00291 1037 aa15.56■□□□□ 0.08
CLK3-224ENST00000568605 CXCL11O14625 94 aa15.56■□□□□ 0.08
CLK3-224ENST00000568605 MS4A4AQ96JQ5 239 aa15.56■□□□□ 0.08
CLK3-224ENST00000568605 CFHR5Q9BXR6 569 aa15.56■□□□□ 0.08
CLK3-224ENST00000568605 TSKSQ9UJT2 592 aa15.56■□□□□ 0.08
CLK3-224ENST00000568605 ZHX2Q9Y6X8 837 aa15.56■□□□□ 0.08
CLK3-224ENST00000568605 USP17L5A8MUK1 530 aa15.55■□□□□ 0.08
CLK3-224ENST00000568605 IGF2BP3O00425 579 aaKnown RBP eCLIP15.55■□□□□ 0.08
CLK3-224ENST00000568605 PRKAB2O43741 272 aa15.55■□□□□ 0.08
CLK3-224ENST00000568605 APPP05067 770 aa15.55■□□□□ 0.08
CLK3-224ENST00000568605 SLURP2P0DP57 97 aa15.55■□□□□ 0.08
CLK3-224ENST00000568605 TDO2P48775 406 aa15.55■□□□□ 0.08
CLK3-224ENST00000568605 MFAP1P55081 439 aaKnown RBP15.55■□□□□ 0.08
CLK3-224ENST00000568605 BRI3BPQ8WY22 251 aa15.55■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms