RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-223	ENST00000560858	ABHD4	Q8TB40	342 aa		4.17	□□□□□ -1.74
SPG11-223	ENST00000560858	FOXQ1	Q9C009	403 aa		4.17	□□□□□ -1.74
SPG11-223	ENST00000560858	PRDM5	Q9NQX1	630 aa	Predicted RBP	4.17	□□□□□ -1.74
SPG11-223	ENST00000560858	C19orf73	Q9NVV2	129 aa		4.17	□□□□□ -1.74
SPG11-223	ENST00000560858	MTMR7	Q9Y216	660 aa		4.17	□□□□□ -1.74
SPG11-223	ENST00000560858	FKBP4	Q02790	459 aa	Known RBP eCLIP	4.16	□□□□□ -1.74
SPG11-223	ENST00000560858	CDC37L1	Q7L3B6	337 aa		4.16	□□□□□ -1.74
SPG11-223	ENST00000560858	ALPK1	Q96QP1	1244 aa		4.16	□□□□□ -1.74
SPG11-223	ENST00000560858	KCNK12	Q9HB15	430 aa		4.16	□□□□□ -1.74
SPG11-223	ENST00000560858	ATP13A1	Q9HD20	1204 aa		4.16	□□□□□ -1.74
SPG11-223	ENST00000560858	CCDC87	Q9NVE4	849 aa		4.16	□□□□□ -1.74
SPG11-223	ENST00000560858	MYO15B	Q96JP2	1530 aa		4.16	□□□□□ -1.74
SPG11-223	ENST00000560858	TMEM238L	A0A1B0GVL6	79 aa		4.15	□□□□□ -1.75
SPG11-223	ENST00000560858	SLC24A1	O60721	1099 aa		4.15	□□□□□ -1.75
SPG11-223	ENST00000560858	SRF	P11831	508 aa		4.15	□□□□□ -1.75
SPG11-223	ENST00000560858	PBXIP1	Q96AQ6	731 aa		4.15	□□□□□ -1.75
SPG11-223	ENST00000560858	BORCS6	Q96GS4	357 aa		4.15	□□□□□ -1.75
SPG11-223	ENST00000560858	HSPA12B	Q96MM6	686 aa		4.15	□□□□□ -1.75
SPG11-223	ENST00000560858	PICK1	Q9NRD5	415 aa		4.15	□□□□□ -1.75
SPG11-223	ENST00000560858	TMEM39A	Q9NV64	488 aa		4.15	□□□□□ -1.75
SPG11-223	ENST00000560858	PPP4R2	Q9NY27	417 aa		4.15	□□□□□ -1.75
SPG11-223	ENST00000560858	TRAK1	Q9UPV9	953 aa		4.15	□□□□□ -1.75
SPG11-223	ENST00000560858	MAPK8IP1	Q9UQF2	711 aa		4.15	□□□□□ -1.75
SPG11-223	ENST00000560858	NFIX	Q14938	502 aa		4.14	□□□□□ -1.75
SPG11-223	ENST00000560858	CDKAL1	Q5VV42	579 aa		4.14	□□□□□ -1.75
SPG11-223	ENST00000560858	ERICH6B	Q5W0A0	696 aa		4.14	□□□□□ -1.75
SPG11-223	ENST00000560858	USPL1	Q5W0Q7	1092 aa		4.14	□□□□□ -1.75
SPG11-223	ENST00000560858	TTC6	Q86TZ1	520 aa		4.14	□□□□□ -1.75
SPG11-223	ENST00000560858	KCT2	Q8NC54	265 aa		4.14	□□□□□ -1.75
SPG11-223	ENST00000560858	MYLIP	Q8WY64	445 aa		4.14	□□□□□ -1.75
SPG11-223	ENST00000560858	ABCB6	Q9NP58	842 aa		4.14	□□□□□ -1.75
SPG11-223	ENST00000560858	SEMA3G	Q9NS98	782 aa		4.14	□□□□□ -1.75
SPG11-223	ENST00000560858	CPNE3	O75131	537 aa	Known RBP	4.13	□□□□□ -1.75
SPG11-223	ENST00000560858	GADD45B	O75293	160 aa	Predicted RBP	4.13	□□□□□ -1.75
SPG11-223	ENST00000560858	EOMES	O95936	686 aa		4.13	□□□□□ -1.75
SPG11-223	ENST00000560858	FAAP100	Q0VG06	881 aa		4.13	□□□□□ -1.75
SPG11-223	ENST00000560858	TCERG1L	Q5VWI1	586 aa		4.13	□□□□□ -1.75
SPG11-223	ENST00000560858	MAP1S	Q66K74	1059 aa	Predicted RBP	4.13	□□□□□ -1.75
SPG11-223	ENST00000560858	PRPF40B	Q6NWY9	871 aa	Known RBP	4.13	□□□□□ -1.75
SPG11-223	ENST00000560858	DTHD1	Q6ZMT9	781 aa		4.13	□□□□□ -1.75
SPG11-223	ENST00000560858	PDZD3	Q86UT5	571 aa		4.13	□□□□□ -1.75
SPG11-223	ENST00000560858	BAHD1	Q8TBE0	780 aa	Predicted RBP	4.13	□□□□□ -1.75
SPG11-223	ENST00000560858	ACSBG1	Q96GR2	724 aa		4.13	□□□□□ -1.75
SPG11-223	ENST00000560858	EMILIN2	Q9BXX0	1053 aa		4.13	□□□□□ -1.75
SPG11-223	ENST00000560858	NPHS2	Q9NP85	383 aa		4.13	□□□□□ -1.75
SPG11-223	ENST00000560858	GPN3	Q9UHW5	284 aa	Predicted RBP	4.13	□□□□□ -1.75
SPG11-223	ENST00000560858		A0A0G2JLL6	359 aa	Predicted RBP	4.12	□□□□□ -1.75
SPG11-223	ENST00000560858	FANCG	O15287	622 aa		4.12	□□□□□ -1.75
SPG11-223	ENST00000560858	ARNT	P27540	789 aa		4.12	□□□□□ -1.75
SPG11-223	ENST00000560858	SSFA2	P28290	1259 aa		4.12	□□□□□ -1.75
SPG11-223	ENST00000560858	ZNF385B	Q569K4	471 aa		4.12	□□□□□ -1.75
SPG11-223	ENST00000560858	PPM1J	Q5JR12	505 aa		4.12	□□□□□ -1.75
SPG11-223	ENST00000560858	TMEM132E	Q6IEE7	984 aa		4.12	□□□□□ -1.75
SPG11-223	ENST00000560858	THAP5	Q7Z6K1	395 aa		4.12	□□□□□ -1.75
SPG11-223	ENST00000560858	MFSD4A	Q8N468	514 aa		4.12	□□□□□ -1.75
SPG11-223	ENST00000560858	SLAMF8	Q9P0V8	285 aa		4.12	□□□□□ -1.75
SPG11-223	ENST00000560858	BRPF3	Q9ULD4	1205 aa		4.12	□□□□□ -1.75
SPG11-223	ENST00000560858	TPX2	Q9ULW0	747 aa	Known RBP	4.12	□□□□□ -1.75
SPG11-223	ENST00000560858	CNTNAP4	Q9C0A0	1308 aa		4.12	□□□□□ -1.75
SPG11-223	ENST00000560858		H3BS24	57 aa		4.11	□□□□□ -1.75
SPG11-223	ENST00000560858	ABL1	P00519	1130 aa		4.11	□□□□□ -1.75
SPG11-223	ENST00000560858	PDE3B	Q13370	1112 aa		4.11	□□□□□ -1.75
SPG11-223	ENST00000560858	SFRP5	Q5T4F7	317 aa		4.11	□□□□□ -1.75
SPG11-223	ENST00000560858	PRRT2	Q7Z6L0	340 aa	Predicted RBP	4.11	□□□□□ -1.75
SPG11-223	ENST00000560858	TMEM151B	Q8IW70	566 aa		4.11	□□□□□ -1.75
SPG11-223	ENST00000560858	SULF2	Q8IWU5	870 aa		4.11	□□□□□ -1.75
SPG11-223	ENST00000560858	MARCH10	Q8NA82	808 aa	Predicted RBP	4.11	□□□□□ -1.75
SPG11-223	ENST00000560858	UBE2F	Q969M7	185 aa		4.11	□□□□□ -1.75
SPG11-223	ENST00000560858	CCDC74A	Q96AQ1	378 aa		4.11	□□□□□ -1.75
SPG11-223	ENST00000560858	KCNC2	Q96PR1	638 aa		4.11	□□□□□ -1.75
SPG11-223	ENST00000560858	CNOT6	Q9ULM6	557 aa	Known RBP	4.11	□□□□□ -1.75
SPG11-223	ENST00000560858	SASH1	O94885	1247 aa		4.1	□□□□□ -1.75
SPG11-223	ENST00000560858	LRIG2	O94898	1065 aa		4.1	□□□□□ -1.75
SPG11-223	ENST00000560858	XRCC5	P13010	732 aa	Known RBP	4.1	□□□□□ -1.75
SPG11-223	ENST00000560858	HK2	P52789	917 aa		4.1	□□□□□ -1.75
SPG11-223	ENST00000560858	DLG4	P78352	724 aa		4.1	□□□□□ -1.75
SPG11-223	ENST00000560858	C22orf34	Q6ZV56	151 aa		4.1	□□□□□ -1.75
SPG11-223	ENST00000560858	CXorf38	Q8TB03	319 aa		4.1	□□□□□ -1.75
SPG11-223	ENST00000560858	GPBAR1	Q8TDU6	330 aa		4.1	□□□□□ -1.75
SPG11-223	ENST00000560858	CBX8	Q9HC52	389 aa		4.1	□□□□□ -1.75
SPG11-223	ENST00000560858	TMEM59L	Q9UK28	342 aa		4.1	□□□□□ -1.75
SPG11-223	ENST00000560858	CSAD	Q9Y600	493 aa		4.1	□□□□□ -1.75
SPG11-223	ENST00000560858	PRR33	A8MZF0	331 aa		4.09	□□□□□ -1.75
SPG11-223	ENST00000560858	RFXAP	O00287	272 aa		4.09	□□□□□ -1.75
SPG11-223	ENST00000560858	SEMA7A	O75326	666 aa		4.09	□□□□□ -1.75
SPG11-223	ENST00000560858	NME2	P22392	152 aa		4.09	□□□□□ -1.75
SPG11-223	ENST00000560858	FGD1	P98174	961 aa		4.09	□□□□□ -1.75
SPG11-223	ENST00000560858	ZNF746	Q6NUN9	644 aa	Predicted RBP	4.09	□□□□□ -1.75
SPG11-223	ENST00000560858	ARMCX6	Q7L4S7	300 aa		4.09	□□□□□ -1.75
SPG11-223	ENST00000560858	GGN	Q86UU5	652 aa		4.09	□□□□□ -1.75
SPG11-223	ENST00000560858	C12orf40	Q86WS4	652 aa		4.09	□□□□□ -1.75
SPG11-223	ENST00000560858	ZNF507	Q8TCN5	953 aa		4.09	□□□□□ -1.75
SPG11-223	ENST00000560858	DNAJC25	Q9H1X3	360 aa		4.09	□□□□□ -1.75
SPG11-223	ENST00000560858	TMPRSS5	Q9H3S3	457 aa		4.09	□□□□□ -1.75
SPG11-223	ENST00000560858	RTEL1	Q9NZ71	1219 aa		4.09	□□□□□ -1.75
SPG11-223	ENST00000560858	ZSWIM5	Q9P217	1185 aa		4.09	□□□□□ -1.75
SPG11-223	ENST00000560858	ST14	Q9Y5Y6	855 aa		4.09	□□□□□ -1.75
SPG11-223	ENST00000560858	DNAJC25-GNG10	A0A024R161	153 aa		4.08	□□□□□ -1.76
SPG11-223	ENST00000560858	DCDC2C	A8MYV0	355 aa		4.08	□□□□□ -1.76
SPG11-223	ENST00000560858	PEX10	O60683	326 aa		4.08	□□□□□ -1.76

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