RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 MIGA1Q8NAN2 632 aa12.89□□□□□ -0.35
LDLR-208ENST00000558518 KCNH5Q8NCM2 988 aa12.89□□□□□ -0.35
LDLR-208ENST00000558518 FAM208AQ9UK61 1670 aaKnown RBP12.89□□□□□ -0.35
LDLR-208ENST00000558518 STX10O60499 249 aa12.89□□□□□ -0.35
LDLR-208ENST00000558518 NUTM2AQ8IVF1 878 aaPredicted RBP12.89□□□□□ -0.35
LDLR-208ENST00000558518 GOLGA5Q8TBA6 731 aa12.89□□□□□ -0.35
LDLR-208ENST00000558518 TEX13AQ9BXU3 409 aaPredicted RBP12.89□□□□□ -0.35
LDLR-208ENST00000558518 TULP1O00294 542 aaPredicted RBP12.88□□□□□ -0.35
LDLR-208ENST00000558518 CUTAO60888 179 aa12.88□□□□□ -0.35
LDLR-208ENST00000558518 CDKL5O76039 1030 aa12.88□□□□□ -0.35
LDLR-208ENST00000558518 TDO2P48775 406 aa12.88□□□□□ -0.35
LDLR-208ENST00000558518 ZNF174Q15697 407 aa12.88□□□□□ -0.35
LDLR-208ENST00000558518 APOA5Q6Q788 366 aa12.88□□□□□ -0.35
LDLR-208ENST00000558518 LDHAL6AQ6ZMR3 332 aa12.88□□□□□ -0.35
LDLR-208ENST00000558518 PAXIP1Q6ZW49 1069 aaPredicted RBP12.88□□□□□ -0.35
LDLR-208ENST00000558518 TRIM22Q8IYM9 498 aa12.88□□□□□ -0.35
LDLR-208ENST00000558518 OXER1Q8TDS5 423 aa12.88□□□□□ -0.35
LDLR-208ENST00000558518 TSPYL1Q9H0U9 437 aa12.88□□□□□ -0.35
LDLR-208ENST00000558518 NAPBQ9H115 298 aa12.88□□□□□ -0.35
LDLR-208ENST00000558518 SEC31BQ9NQW1 1179 aa12.88□□□□□ -0.35
LDLR-208ENST00000558518 SALL1Q9NSC2 1324 aa12.88□□□□□ -0.35
LDLR-208ENST00000558518 ADGRL3Q9HAR2 1447 aa12.88□□□□□ -0.35
LDLR-208ENST00000558518 CASP8Q14790 479 aa12.88□□□□□ -0.35
LDLR-208ENST00000558518 TTC31Q49AM3 519 aaPredicted RBP12.88□□□□□ -0.35
LDLR-208ENST00000558518 SRLQ86TD4 932 aa12.88□□□□□ -0.35
LDLR-208ENST00000558518 SMARCC1Q92922 1105 aaPredicted RBP12.88□□□□□ -0.35
LDLR-208ENST00000558518 GOLGA6L9A6NEM1 432 aa12.88□□□□□ -0.35
LDLR-208ENST00000558518 TULP2O00295 520 aa12.88□□□□□ -0.35
LDLR-208ENST00000558518 RRAGBQ5VZM2 374 aa12.88□□□□□ -0.35
LDLR-208ENST00000558518 CSRNP2Q9H175 543 aa12.88□□□□□ -0.35
LDLR-208ENST00000558518 MON2Q7Z3U7 1717 aa12.87□□□□□ -0.35
LDLR-208ENST00000558518 LIG3P49916 1009 aa12.87□□□□□ -0.35
LDLR-208ENST00000558518 CTR9Q6PD62 1173 aa12.87□□□□□ -0.35
LDLR-208ENST00000558518 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.87□□□□□ -0.35
LDLR-208ENST00000558518 FAM107BQ9H098 131 aa12.87□□□□□ -0.35
LDLR-208ENST00000558518 NEDD4P46934 1319 aa12.87□□□□□ -0.35
LDLR-208ENST00000558518 ADAMTS13Q76LX8 1427 aa12.87□□□□□ -0.35
LDLR-208ENST00000558518 RIMBP3CA6NJZ7 1639 aa12.87□□□□□ -0.35
LDLR-208ENST00000558518 RIMBP3BA6NNM3 1639 aa12.87□□□□□ -0.35
LDLR-208ENST00000558518 RIMBP3Q9UFD9 1639 aa12.87□□□□□ -0.35
LDLR-208ENST00000558518 FAM170AA1A519 330 aa12.87□□□□□ -0.35
LDLR-208ENST00000558518 CCDC151A5D8V7 595 aa12.87□□□□□ -0.35
LDLR-208ENST00000558518 KCTD19Q17RG1 926 aaPredicted RBP12.87□□□□□ -0.35
LDLR-208ENST00000558518 MB21D2Q8IYB1 491 aaPredicted RBP12.87□□□□□ -0.35
LDLR-208ENST00000558518 BPIFA3Q9BQP9 254 aa12.87□□□□□ -0.35
LDLR-208ENST00000558518 VPS54Q9P1Q0 977 aa12.87□□□□□ -0.35
LDLR-208ENST00000558518 DACH1Q9UI36 760 aa12.87□□□□□ -0.35
LDLR-208ENST00000558518 CDC23Q9UJX2 597 aa12.87□□□□□ -0.35
LDLR-208ENST00000558518 TUBGCP6Q96RT7 1819 aa12.87□□□□□ -0.35
LDLR-208ENST00000558518 ERICH2A1L162 156 aa12.87□□□□□ -0.35
LDLR-208ENST00000558518 MACROD2A1Z1Q3 448 aa12.87□□□□□ -0.35
LDLR-208ENST00000558518 KIAA1328Q86T90 577 aa12.87□□□□□ -0.35
LDLR-208ENST00000558518 TMEM139Q8IV31 216 aa12.87□□□□□ -0.35
LDLR-208ENST00000558518 CRACR2AQ9BSW2 395 aa12.87□□□□□ -0.35
LDLR-208ENST00000558518 JADE2Q9NQC1 790 aa12.87□□□□□ -0.35
LDLR-208ENST00000558518 FXR1P51114 621 aaKnown RBP eCLIP12.86□□□□□ -0.35
LDLR-208ENST00000558518 TSR1Q2NL82 804 aaKnown RBP12.86□□□□□ -0.35
LDLR-208ENST00000558518 CEP112Q8N8E3 955 aa12.86□□□□□ -0.35
LDLR-208ENST00000558518 ANKZF1Q9H8Y5 726 aa12.86□□□□□ -0.35
LDLR-208ENST00000558518 ARMT1Q9H993 441 aa12.86□□□□□ -0.35
LDLR-208ENST00000558518 ADGRG1Q9Y653 693 aa12.86□□□□□ -0.35
LDLR-208ENST00000558518 RANBP6O60518 1105 aaKnown RBP12.86□□□□□ -0.35
LDLR-208ENST00000558518 KRT9P35527 623 aa12.86□□□□□ -0.35
LDLR-208ENST00000558518 RESP18Q5W5W9 173 aa12.86□□□□□ -0.35
LDLR-208ENST00000558518 KLHL34Q8N239 644 aa12.86□□□□□ -0.35
LDLR-208ENST00000558518 APPBP2Q92624 585 aa12.86□□□□□ -0.35
LDLR-208ENST00000558518 KIFC2Q96AC6 838 aa12.86□□□□□ -0.35
LDLR-208ENST00000558518 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.86□□□□□ -0.352e-9■■□□□ 12.3
LDLR-208ENST00000558518 TUBE1Q9UJT0 475 aa12.86□□□□□ -0.35
LDLR-208ENST00000558518 SYNRGQ9UMZ2 1314 aa12.86□□□□□ -0.35
LDLR-208ENST00000558518 ZPR1O75312 459 aa12.86□□□□□ -0.35
LDLR-208ENST00000558518 TUBB4AP04350 444 aa12.86□□□□□ -0.35
LDLR-208ENST00000558518 SF3A3Q12874 501 aaKnown RBP eCLIP12.86□□□□□ -0.359e-7■■□□□ 13.7
LDLR-208ENST00000558518 IFIT5Q13325 482 aaKnown RBP12.86□□□□□ -0.35
LDLR-208ENST00000558518 NOSTRINQ8IVI9 506 aa12.86□□□□□ -0.35
LDLR-208ENST00000558518 EXOC4Q96A65 974 aa12.86□□□□□ -0.35
LDLR-208ENST00000558518 NAPGQ99747 312 aaPredicted RBP12.86□□□□□ -0.35
LDLR-208ENST00000558518 CENPHQ9H3R5 247 aa12.86□□□□□ -0.35
LDLR-208ENST00000558518 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.85□□□□□ -0.35
LDLR-208ENST00000558518 EIF3CLB5ME19 914 aaKnown RBP12.85□□□□□ -0.35
LDLR-208ENST00000558518 PRKAB2O43741 272 aa12.85□□□□□ -0.35
LDLR-208ENST00000558518 RNF40O75150 1001 aa12.85□□□□□ -0.35
LDLR-208ENST00000558518 NAP1L1P55209 391 aaKnown RBP12.85□□□□□ -0.35
LDLR-208ENST00000558518 EIF3CQ99613 913 aaKnown RBP12.85□□□□□ -0.35
LDLR-208ENST00000558518 ZNF532Q9HCE3 1301 aa12.85□□□□□ -0.35
LDLR-208ENST00000558518 PALLDQ8WX93 1383 aa12.85□□□□□ -0.35
LDLR-208ENST00000558518 FOXO4P98177 505 aa12.85□□□□□ -0.35
LDLR-208ENST00000558518 RSRC2Q7L4I2 434 aaKnown RBP12.85□□□□□ -0.35
LDLR-208ENST00000558518 CCDC148Q8NFR7 591 aa12.85□□□□□ -0.35
LDLR-208ENST00000558518 ABCF2Q9UG63 623 aa12.85□□□□□ -0.35
LDLR-208ENST00000558518 TBC1D2BQ9UPU7 963 aa12.85□□□□□ -0.35
LDLR-208ENST00000558518 LRRIQ3A6PVS8 624 aaPredicted RBP12.85□□□□□ -0.35
LDLR-208ENST00000558518 UBXN1Q04323 297 aa12.85□□□□□ -0.35
LDLR-208ENST00000558518 BRD3Q15059 726 aa12.85□□□□□ -0.35
LDLR-208ENST00000558518 PTPAQ15257 358 aa12.85□□□□□ -0.35
LDLR-208ENST00000558518 ENOX2Q16206 610 aaKnown RBP12.85□□□□□ -0.35
LDLR-208ENST00000558518 EHD4Q9H223 541 aa12.85□□□□□ -0.35
LDLR-208ENST00000558518 WWC3Q9ULE0 1092 aa12.85□□□□□ -0.35
LDLR-208ENST00000558518 AKAP2Q9Y2D5 859 aa12.85□□□□□ -0.35
LDLR-208ENST00000558518 SAMM50Q9Y512 469 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 115 ms