RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 KIF5AQ12840 1032 aa8.76□□□□□ -1.01
VPS13D-211ENST00000543710 DAAM2Q86T65 1068 aa8.76□□□□□ -1.01
VPS13D-211ENST00000543710 DDX55Q8NHQ9 600 aaKnown RBP eCLIP8.76□□□□□ -1.01
VPS13D-211ENST00000543710 MICAL1Q8TDZ2 1067 aa8.76□□□□□ -1.01
VPS13D-211ENST00000543710 FBF1Q8TES7 1133 aa8.76□□□□□ -1.01
VPS13D-211ENST00000543710 CPLX3Q8WVH0 158 aa8.76□□□□□ -1.01
VPS13D-211ENST00000543710 RSRC1Q96IZ7 334 aaKnown RBP8.76□□□□□ -1.01
VPS13D-211ENST00000543710 PAG1Q9NWQ8 432 aa8.76□□□□□ -1.01
VPS13D-211ENST00000543710 GRM8O00222 908 aa8.75□□□□□ -1.01
VPS13D-211ENST00000543710 NOP56O00567 594 aaKnown RBP8.75□□□□□ -1.01
VPS13D-211ENST00000543710 CIB2O75838 187 aa8.75□□□□□ -1.01
VPS13D-211ENST00000543710 SSBP05455 408 aaKnown RBP eCLIP8.75□□□□□ -1.01
VPS13D-211ENST00000543710 NLRP12P59046 1061 aa8.75□□□□□ -1.01
VPS13D-211ENST00000543710 TYRO3Q06418 890 aa8.75□□□□□ -1.01
VPS13D-211ENST00000543710 SETDB1Q15047 1291 aa8.75□□□□□ -1.01
VPS13D-211ENST00000543710 TTC31Q49AM3 519 aaPredicted RBP8.75□□□□□ -1.01
VPS13D-211ENST00000543710 ARHGAP24Q8N264 748 aa8.75□□□□□ -1.01
VPS13D-211ENST00000543710 FAM76AQ8TAV0 307 aa8.75□□□□□ -1.01
VPS13D-211ENST00000543710 CARD10Q9BWT7 1032 aa8.75□□□□□ -1.01
VPS13D-211ENST00000543710 BOLA2Q9H3K6 86 aa8.75□□□□□ -1.01
VPS13D-211ENST00000543710 ZC3H13Q5T200 1668 aaKnown RBP8.75□□□□□ -1.01
VPS13D-211ENST00000543710 MAGEB6P1A0A0J9YX57 407 aa8.75□□□□□ -1.01
VPS13D-211ENST00000543710 TRIM75PA6NK02 468 aa8.75□□□□□ -1.01
VPS13D-211ENST00000543710 AKR1B15C9JRZ8 316 aaPredicted RBP8.75□□□□□ -1.01
VPS13D-211ENST00000543710 N4BP3O15049 544 aa8.75□□□□□ -1.01
VPS13D-211ENST00000543710 LDHBP07195 334 aaKnown RBP8.75□□□□□ -1.01
VPS13D-211ENST00000543710 RPS6KB1P23443 525 aa8.75□□□□□ -1.01
VPS13D-211ENST00000543710 KCTD2Q14681 263 aa8.75□□□□□ -1.01
VPS13D-211ENST00000543710 MASTLQ96GX5 879 aa8.75□□□□□ -1.01
VPS13D-211ENST00000543710 SAMD15Q9P1V8 674 aa8.75□□□□□ -1.01
VPS13D-211ENST00000543710 DEXIO95424 95 aa8.75□□□□□ -1.01
VPS13D-211ENST00000543710 MCM10Q7L590 875 aa8.75□□□□□ -1.01
VPS13D-211ENST00000543710 DHX32Q7L7V1 743 aaKnown RBP8.75□□□□□ -1.01
VPS13D-211ENST00000543710 FTOQ9C0B1 505 aaKnown RBP eCLIP8.75□□□□□ -1.01
VPS13D-211ENST00000543710 RAB23Q9ULC3 237 aa8.75□□□□□ -1.01
VPS13D-211ENST00000543710 RBM8AQ9Y5S9 174 aaKnown RBP8.75□□□□□ -1.01
VPS13D-211ENST00000543710 A0A1B0GVL5 298 aa8.75□□□□□ -1.01
VPS13D-211ENST00000543710 SKILP12757 684 aa8.75□□□□□ -1.01
VPS13D-211ENST00000543710 GNG11P61952 73 aa8.75□□□□□ -1.01
VPS13D-211ENST00000543710 CFAP157Q5JU67 520 aa8.75□□□□□ -1.01
VPS13D-211ENST00000543710 FYB2Q5VWT5 728 aa8.75□□□□□ -1.01
VPS13D-211ENST00000543710 CEP85Q6P2H3 762 aa8.75□□□□□ -1.01
VPS13D-211ENST00000543710 TRIML1Q8N9V2 468 aa8.75□□□□□ -1.01
VPS13D-211ENST00000543710 MLKLQ8NB16 471 aa8.75□□□□□ -1.01
VPS13D-211ENST00000543710 UIMC1Q96RL1 719 aa8.75□□□□□ -1.01
VPS13D-211ENST00000543710 PRDM5Q9NQX1 630 aaPredicted RBP8.75□□□□□ -1.01
VPS13D-211ENST00000543710 ATP10DQ9P241 1426 aa8.75□□□□□ -1.01
VPS13D-211ENST00000543710 FBXO3Q9UK99 471 aa8.75□□□□□ -1.01
VPS13D-211ENST00000543710 SSX2IPQ9Y2D8 614 aa8.75□□□□□ -1.01
VPS13D-211ENST00000543710 TRPM1Q7Z4N2 1603 aa8.75□□□□□ -1.01
VPS13D-211ENST00000543710 GOLGA8KD6RF30 607 aa8.74□□□□□ -1.01
VPS13D-211ENST00000543710 ZNF189O75820 626 aaPredicted RBP8.74□□□□□ -1.01
VPS13D-211ENST00000543710 SYT1P21579 422 aa8.74□□□□□ -1.01
VPS13D-211ENST00000543710 YWHAEP62258 255 aaKnown RBP8.74□□□□□ -1.01
VPS13D-211ENST00000543710 CCDC65Q8IXS2 484 aa8.74□□□□□ -1.01
VPS13D-211ENST00000543710 LINS1Q8NG48 757 aa8.74□□□□□ -1.01
VPS13D-211ENST00000543710 IP6K1Q92551 441 aa8.74□□□□□ -1.01
VPS13D-211ENST00000543710 SLC26A6Q9BXS9 759 aa8.74□□□□□ -1.01
VPS13D-211ENST00000543710 VCX3BQ9H321 246 aa8.74□□□□□ -1.01
VPS13D-211ENST00000543710 CARMIL3Q8ND23 1372 aa8.74□□□□□ -1.01
VPS13D-211ENST00000543710 ERBB4Q15303 1308 aa8.74□□□□□ -1.01
VPS13D-211ENST00000543710 MYO3BQ8WXR4 1341 aa8.74□□□□□ -1.01
VPS13D-211ENST00000543710 KDM3AQ9Y4C1 1321 aa8.74□□□□□ -1.01
VPS13D-211ENST00000543710 CDC42BPGQ6DT37 1551 aa8.74□□□□□ -1.01
VPS13D-211ENST00000543710 UGGT1Q9NYU2 1555 aa8.74□□□□□ -1.01
VPS13D-211ENST00000543710 TSPY3P0CV98 308 aa8.74□□□□□ -1.01
VPS13D-211ENST00000543710 TSPY8P0CW00 308 aa8.74□□□□□ -1.01
VPS13D-211ENST00000543710 FAM81BQ96LP2 452 aa8.74□□□□□ -1.01
VPS13D-211ENST00000543710 TCHPQ9BT92 498 aa8.74□□□□□ -1.01
VPS13D-211ENST00000543710 USP26Q9BXU7 913 aa8.74□□□□□ -1.01
VPS13D-211ENST00000543710 JADE2Q9NQC1 790 aa8.74□□□□□ -1.01
VPS13D-211ENST00000543710 EIF3CLB5ME19 914 aaKnown RBP8.74□□□□□ -1.01
VPS13D-211ENST00000543710 GAS8O95995 478 aa8.74□□□□□ -1.01
VPS13D-211ENST00000543710 MYL5Q02045 173 aa8.74□□□□□ -1.01
VPS13D-211ENST00000543710 CDAN1Q8IWY9 1227 aa8.74□□□□□ -1.01
VPS13D-211ENST00000543710 SYCP3Q8IZU3 236 aa8.74□□□□□ -1.01
VPS13D-211ENST00000543710 SMC6Q96SB8 1091 aa8.74□□□□□ -1.01
VPS13D-211ENST00000543710 EIF3CQ99613 913 aaKnown RBP8.74□□□□□ -1.01
VPS13D-211ENST00000543710 DNAI1Q9UI46 699 aa8.74□□□□□ -1.01
VPS13D-211ENST00000543710 SH3TC1Q8TE82 1336 aa8.74□□□□□ -1.01
VPS13D-211ENST00000543710 NCAPD2Q15021 1401 aa8.74□□□□□ -1.01
VPS13D-211ENST00000543710 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP8.74□□□□□ -1.01
VPS13D-211ENST00000543710 A0A1W2PRG0 241 aa8.74□□□□□ -1.01
VPS13D-211ENST00000543710 ERVV-2B6SEH9 535 aa8.74□□□□□ -1.01
VPS13D-211ENST00000543710 SMARCA5O60264 1052 aaPredicted RBP8.74□□□□□ -1.01
VPS13D-211ENST00000543710 RANBP6O60518 1105 aaKnown RBP8.74□□□□□ -1.01
VPS13D-211ENST00000543710 KIF11P52732 1056 aa8.74□□□□□ -1.01
VPS13D-211ENST00000543710 HUNKP57058 714 aa8.74□□□□□ -1.01
VPS13D-211ENST00000543710 PICALMQ13492 652 aa8.74□□□□□ -1.01
VPS13D-211ENST00000543710 WHAMMP3Q1A5X7 153 aa8.74□□□□□ -1.01
VPS13D-211ENST00000543710 Q6ZUG5 572 aa8.74□□□□□ -1.01
VPS13D-211ENST00000543710 NME9Q86XW9 330 aa8.74□□□□□ -1.01
VPS13D-211ENST00000543710 IFT20Q8IY31 132 aa8.74□□□□□ -1.01
VPS13D-211ENST00000543710 IQUBQ8NA54 791 aa8.74□□□□□ -1.01
VPS13D-211ENST00000543710 NAPGQ99747 312 aaPredicted RBP8.74□□□□□ -1.01
VPS13D-211ENST00000543710 IQCGQ9H095 443 aaKnown RBP8.74□□□□□ -1.01
VPS13D-211ENST00000543710 ZBTB40Q9NUA8 1239 aa8.74□□□□□ -1.01
VPS13D-211ENST00000543710 MLH3Q9UHC1 1453 aa8.74□□□□□ -1.01
VPS13D-211ENST00000543710 SERPINB2P05120 415 aa8.74□□□□□ -1.01
VPS13D-211ENST00000543710 SSR1P43307 286 aaKnown RBP8.74□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms