RNA–Protein interactions for RNA: ENST00000530579.6

NEDD8-MDP1-201, Transcript of NEDD8-MDP1 readthrough, humanhuman

TSL 2

Gene NEDD8-MDP1, Length 471 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-MDP1-201ENST00000530579 USP50Q70EL3 339 aaPredicted RBP10.05□□□□□ -0.8
NEDD8-MDP1-201ENST00000530579 DHX32Q7L7V1 743 aaKnown RBP10.05□□□□□ -0.8
NEDD8-MDP1-201ENST00000530579 SH3BP5LQ7L8J4 393 aa10.05□□□□□ -0.8
NEDD8-MDP1-201ENST00000530579 CHST3Q7LGC8 479 aa10.05□□□□□ -0.8
NEDD8-MDP1-201ENST00000530579 FAM83AQ86UY5 434 aa10.05□□□□□ -0.8
NEDD8-MDP1-201ENST00000530579 APOBEC3FQ8IUX4 373 aaKnown RBP10.05□□□□□ -0.8
NEDD8-MDP1-201ENST00000530579 FOXP4Q8IVH2 680 aaPredicted RBP10.05□□□□□ -0.8
NEDD8-MDP1-201ENST00000530579 ESR2Q92731 530 aa10.05□□□□□ -0.8
NEDD8-MDP1-201ENST00000530579 DCPSQ96C86 337 aaKnown RBP10.05□□□□□ -0.8
NEDD8-MDP1-201ENST00000530579 TMEM39BQ9GZU3 492 aa10.05□□□□□ -0.8
NEDD8-MDP1-201ENST00000530579 PI4KBQ9UBF8 816 aa10.05□□□□□ -0.8
NEDD8-MDP1-201ENST00000530579 CLEC11AQ9Y240 323 aa10.05□□□□□ -0.8
NEDD8-MDP1-201ENST00000530579 TACC3Q9Y6A5 838 aa10.05□□□□□ -0.8
NEDD8-MDP1-201ENST00000530579 NEDD4P46934 1319 aa10.05□□□□□ -0.8
NEDD8-MDP1-201ENST00000530579 CNTNAP1P78357 1384 aa10.04□□□□□ -0.8
NEDD8-MDP1-201ENST00000530579 PRC1O43663 620 aa10.04□□□□□ -0.8
NEDD8-MDP1-201ENST00000530579 BECN1Q14457 450 aa10.04□□□□□ -0.8
NEDD8-MDP1-201ENST00000530579 FAM47AQ5JRC9 791 aa10.04□□□□□ -0.8
NEDD8-MDP1-201ENST00000530579 C16orf86Q6ZW13 317 aa10.04□□□□□ -0.8
NEDD8-MDP1-201ENST00000530579 NOL8Q76FK4 1167 aaKnown RBP10.04□□□□□ -0.8
NEDD8-MDP1-201ENST00000530579 HSCBQ8IWL3 235 aa10.04□□□□□ -0.8
NEDD8-MDP1-201ENST00000530579 MB21D2Q8IYB1 491 aaPredicted RBP10.04□□□□□ -0.8
NEDD8-MDP1-201ENST00000530579 SLC44A5Q8NCS7 719 aa10.04□□□□□ -0.8
NEDD8-MDP1-201ENST00000530579 ZNF526Q8TF50 670 aaPredicted RBP10.04□□□□□ -0.8
NEDD8-MDP1-201ENST00000530579 TCEANC2Q96MN5 208 aa10.04□□□□□ -0.8
NEDD8-MDP1-201ENST00000530579 CSRNP1Q96S65 589 aa10.04□□□□□ -0.8
NEDD8-MDP1-201ENST00000530579 LRRC2Q9BYS8 371 aa10.04□□□□□ -0.8
NEDD8-MDP1-201ENST00000530579 DEFB129Q9H1M3 183 aa10.04□□□□□ -0.8
NEDD8-MDP1-201ENST00000530579 TAF1DQ9H5J8 278 aaPredicted RBP10.04□□□□□ -0.8
NEDD8-MDP1-201ENST00000530579 RRAGCQ9HB90 399 aa10.04□□□□□ -0.8
NEDD8-MDP1-201ENST00000530579 GGA3Q9NZ52 723 aa10.04□□□□□ -0.8
NEDD8-MDP1-201ENST00000530579 ZSWIM5Q9P217 1185 aa10.04□□□□□ -0.8
NEDD8-MDP1-201ENST00000530579 DAXXQ9UER7 740 aaPredicted RBP10.04□□□□□ -0.8
NEDD8-MDP1-201ENST00000530579 SWAP70Q9UH65 585 aa10.04□□□□□ -0.8
NEDD8-MDP1-201ENST00000530579 SERPINB13Q9UIV8 391 aa10.04□□□□□ -0.8
NEDD8-MDP1-201ENST00000530579 CCDC88AQ3V6T2 1871 aa10.04□□□□□ -0.8
NEDD8-MDP1-201ENST00000530579 MYH7P12883 1935 aa10.03□□□□□ -0.8
NEDD8-MDP1-201ENST00000530579 TSPY2A6NKD2 308 aa10.03□□□□□ -0.8
NEDD8-MDP1-201ENST00000530579 IFIT3O14879 490 aaKnown RBP10.03□□□□□ -0.8
NEDD8-MDP1-201ENST00000530579 ORC4O43929 436 aa10.03□□□□□ -0.8
NEDD8-MDP1-201ENST00000530579 FGRP09769 529 aa10.03□□□□□ -0.8
NEDD8-MDP1-201ENST00000530579 TSPY3P0CV98 308 aa10.03□□□□□ -0.8
NEDD8-MDP1-201ENST00000530579 TSPY8P0CW00 308 aa10.03□□□□□ -0.8
NEDD8-MDP1-201ENST00000530579 TFAP4Q01664 338 aa10.03□□□□□ -0.8
NEDD8-MDP1-201ENST00000530579 EXOSC10Q01780 885 aaKnown RBP10.03□□□□□ -0.8
NEDD8-MDP1-201ENST00000530579 COL9A3Q14050 684 aaPredicted RBP10.03□□□□□ -0.8
NEDD8-MDP1-201ENST00000530579 ANKRD1Q15327 319 aa10.03□□□□□ -0.8
NEDD8-MDP1-201ENST00000530579 Q6ZUG5 572 aa10.03□□□□□ -0.8
NEDD8-MDP1-201ENST00000530579 CYB5R4Q7L1T6 521 aa10.03□□□□□ -0.8
NEDD8-MDP1-201ENST00000530579 PNMA8AQ86V59 439 aaPredicted RBP10.03□□□□□ -0.8
NEDD8-MDP1-201ENST00000530579 SULF1Q8IWU6 871 aa10.03□□□□□ -0.8
NEDD8-MDP1-201ENST00000530579 IL27Q8NEV9 243 aa10.03□□□□□ -0.8
NEDD8-MDP1-201ENST00000530579 ZKSCAN3Q9BRR0 538 aa10.03□□□□□ -0.8
NEDD8-MDP1-201ENST00000530579 LARP6Q9BRS8 491 aaKnown RBP10.03□□□□□ -0.8
NEDD8-MDP1-201ENST00000530579 UBAC1Q9BSL1 405 aa10.03□□□□□ -0.8
NEDD8-MDP1-201ENST00000530579 EHD4Q9H223 541 aa10.03□□□□□ -0.8
NEDD8-MDP1-201ENST00000530579 XPO5Q9HAV4 1204 aaKnown RBP eCLIP10.03□□□□□ -0.8
NEDD8-MDP1-201ENST00000530579 DDX52Q9Y2R4 599 aaKnown RBP eCLIP10.03□□□□□ -0.8
NEDD8-MDP1-201ENST00000530579 MYH2Q9UKX2 1941 aa10.03□□□□□ -0.8
NEDD8-MDP1-201ENST00000530579 ADAMTSL1Q8N6G6 1762 aa10.02□□□□□ -0.81
NEDD8-MDP1-201ENST00000530579 ERICH2A1L162 156 aa10.02□□□□□ -0.81
NEDD8-MDP1-201ENST00000530579 FAM196BA6NMK8 535 aa10.02□□□□□ -0.81
NEDD8-MDP1-201ENST00000530579 POTECB2RU33 542 aa10.02□□□□□ -0.81
NEDD8-MDP1-201ENST00000530579 MPHOSPH10O00566 681 aaKnown RBP10.02□□□□□ -0.81
NEDD8-MDP1-201ENST00000530579 SLURP2P0DP57 97 aa10.02□□□□□ -0.81
NEDD8-MDP1-201ENST00000530579 VEGFAP15692 232 aaPredicted RBP10.02□□□□□ -0.81
NEDD8-MDP1-201ENST00000530579 MCM2P49736 904 aa10.02□□□□□ -0.81
NEDD8-MDP1-201ENST00000530579 AK2P54819 239 aa10.02□□□□□ -0.81
NEDD8-MDP1-201ENST00000530579 ANTXR2P58335 489 aa10.02□□□□□ -0.81
NEDD8-MDP1-201ENST00000530579 GABPAQ06546 454 aa10.02□□□□□ -0.81
NEDD8-MDP1-201ENST00000530579 SART3Q15020 963 aaKnown RBP10.02□□□□□ -0.81
NEDD8-MDP1-201ENST00000530579 TMEM67Q5HYA8 995 aa10.02□□□□□ -0.81
NEDD8-MDP1-201ENST00000530579 PRAMEF18Q5VWM3 479 aa10.02□□□□□ -0.81
NEDD8-MDP1-201ENST00000530579 MIGA2Q7L4E1 593 aa10.02□□□□□ -0.81
NEDD8-MDP1-201ENST00000530579 USP48Q86UV5 1035 aa10.02□□□□□ -0.81
NEDD8-MDP1-201ENST00000530579 IQCA1Q86XH1 822 aa10.02□□□□□ -0.81
NEDD8-MDP1-201ENST00000530579 NKX2-3Q8TAU0 364 aa10.02□□□□□ -0.81
NEDD8-MDP1-201ENST00000530579 ZC3H15Q8WU90 426 aaKnown RBP10.02□□□□□ -0.81
NEDD8-MDP1-201ENST00000530579 SNX21Q969T3 373 aa10.02□□□□□ -0.81
NEDD8-MDP1-201ENST00000530579 TTC14Q96N46 770 aa10.02□□□□□ -0.81
NEDD8-MDP1-201ENST00000530579 ALDH8A1Q9H2A2 487 aaPredicted RBP10.02□□□□□ -0.81
NEDD8-MDP1-201ENST00000530579 NAP1L2Q9ULW6 460 aaPredicted RBP10.02□□□□□ -0.81
NEDD8-MDP1-201ENST00000530579 ZNF646O15015 1829 aaPredicted RBP10.02□□□□□ -0.81
NEDD8-MDP1-201ENST00000530579 ATRNL1Q5VV63 1379 aa10.01□□□□□ -0.81
NEDD8-MDP1-201ENST00000530579 ROBO3Q96MS0 1386 aa10.01□□□□□ -0.81
NEDD8-MDP1-201ENST00000530579 PSME4Q14997 1843 aa10.01□□□□□ -0.81
NEDD8-MDP1-201ENST00000530579 CD2BP2O95400 341 aaKnown RBP10.01□□□□□ -0.81
NEDD8-MDP1-201ENST00000530579 RASA1P20936 1047 aa10.01□□□□□ -0.81
NEDD8-MDP1-201ENST00000530579 SHMT1P34896 483 aa10.01□□□□□ -0.81
NEDD8-MDP1-201ENST00000530579 NT5C2P49902 561 aa10.01□□□□□ -0.81
NEDD8-MDP1-201ENST00000530579 SUPT20HL1Q3ZLR7 823 aa10.01□□□□□ -0.81
NEDD8-MDP1-201ENST00000530579 CERKLQ49MI3 558 aaPredicted RBP10.01□□□□□ -0.81
NEDD8-MDP1-201ENST00000530579 NBPF12Q5TAG4 269 aaPredicted RBP10.01□□□□□ -0.81
NEDD8-MDP1-201ENST00000530579 NFXL1Q6ZNB6 911 aa10.01□□□□□ -0.81
NEDD8-MDP1-201ENST00000530579 KRT26Q7Z3Y9 468 aa10.01□□□□□ -0.81
NEDD8-MDP1-201ENST00000530579 CDAN1Q8IWY9 1227 aa10.01□□□□□ -0.81
NEDD8-MDP1-201ENST00000530579 BRF1Q92994 677 aa10.01□□□□□ -0.81
NEDD8-MDP1-201ENST00000530579 HOOK2Q96ED9 719 aa10.01□□□□□ -0.81
NEDD8-MDP1-201ENST00000530579 TMEM87BQ96K49 555 aa10.01□□□□□ -0.81
NEDD8-MDP1-201ENST00000530579 ZSCAN10Q96SZ4 725 aaPredicted RBP10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 75.7 ms