RNA–Protein interactions for RNA: ENST00000530304.5

PCF11-203, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 1 (best)

Gene PCF11, Length 2,649 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-203ENST00000530304 PTPN21Q16825 1174 aa22.36■■□□□ 1.17
PCF11-203ENST00000530304 TRIM22Q8IYM9 498 aa22.36■■□□□ 1.17
PCF11-203ENST00000530304 CCDC82Q8N4S0 544 aa22.36■■□□□ 1.17
PCF11-203ENST00000530304 TOMM22Q9NS69 142 aa22.36■■□□□ 1.17
PCF11-203ENST00000530304 NID2Q14112 1375 aa22.36■■□□□ 1.17
PCF11-203ENST00000530304 NPHP1O15259 732 aa22.36■■□□□ 1.17
PCF11-203ENST00000530304 CCP110O43303 1012 aa22.36■■□□□ 1.17
PCF11-203ENST00000530304 TOP1P11387 765 aaKnown RBP22.36■■□□□ 1.17
PCF11-203ENST00000530304 TDO2P48775 406 aa22.36■■□□□ 1.17
PCF11-203ENST00000530304 STAG1Q8WVM7 1258 aa22.36■■□□□ 1.17
PCF11-203ENST00000530304 KAT6BQ8WYB5 2073 aa22.35■■□□□ 1.17
PCF11-203ENST00000530304 IL6STP40189 918 aaPredicted RBP22.35■■□□□ 1.17
PCF11-203ENST00000530304 WTAPQ15007 396 aa22.35■■□□□ 1.17
PCF11-203ENST00000530304 LCORLQ8N3X6 602 aa22.35■■□□□ 1.17
PCF11-203ENST00000530304 MPHOSPH8Q99549 860 aa22.35■■□□□ 1.17
PCF11-203ENST00000530304 HOOK1Q9UJC3 728 aaKnown RBP22.35■■□□□ 1.17
PCF11-203ENST00000530304 FBXO2Q9UK22 296 aaPredicted RBP22.35■■□□□ 1.17
PCF11-203ENST00000530304 ARAP2Q8WZ64 1704 aa22.35■■□□□ 1.17
PCF11-203ENST00000530304 LRP5O75197 1615 aa22.35■■□□□ 1.17
PCF11-203ENST00000530304 ETF1P62495 437 aaKnown RBP22.35■■□□□ 1.17
PCF11-203ENST00000530304 GOLGA8FQ08AF8 430 aa22.35■■□□□ 1.17
PCF11-203ENST00000530304 GOLGA8DPQ0D2H9 430 aa22.35■■□□□ 1.17
PCF11-203ENST00000530304 SART3Q15020 963 aaKnown RBP22.35■■□□□ 1.17
PCF11-203ENST00000530304 CMTR1Q8N1G2 835 aaKnown RBP22.35■■□□□ 1.17
PCF11-203ENST00000530304 UTP14AQ9BVJ6 771 aaKnown RBP22.35■■□□□ 1.17
PCF11-203ENST00000530304 NACAP1Q9BZK3 213 aa22.35■■□□□ 1.17
PCF11-203ENST00000530304 FOXP1Q9H334 677 aaPredicted RBP22.35■■□□□ 1.17
PCF11-203ENST00000530304 BTG4Q9NY30 223 aa22.35■■□□□ 1.17
PCF11-203ENST00000530304 SLC4A4Q9Y6R1 1079 aa22.35■■□□□ 1.17
PCF11-203ENST00000530304 DOCK2Q92608 1830 aa22.35■■□□□ 1.17
PCF11-203ENST00000530304 PTPREP23469 700 aa22.34■■□□□ 1.17
PCF11-203ENST00000530304 RILPL1Q5EBL4 403 aa22.34■■□□□ 1.17
PCF11-203ENST00000530304 LRRN4CLQ8ND94 238 aa22.34■■□□□ 1.17
PCF11-203ENST00000530304 MAN1B1Q9UKM7 699 aa22.34■■□□□ 1.17
PCF11-203ENST00000530304 POLR2DO15514 142 aaKnown RBP22.34■■□□□ 1.17
PCF11-203ENST00000530304 GNAT2P19087 354 aa22.34■■□□□ 1.17
PCF11-203ENST00000530304 POSTNQ15063 836 aa22.34■■□□□ 1.17
PCF11-203ENST00000530304 ERCC6LQ2NKX8 1250 aa22.34■■□□□ 1.17
PCF11-203ENST00000530304 AK7Q96M32 723 aa22.34■■□□□ 1.17
PCF11-203ENST00000530304 SEC31BQ9NQW1 1179 aa22.34■■□□□ 1.17
PCF11-203ENST00000530304 INTS13Q9NVM9 706 aa22.34■■□□□ 1.17
PCF11-203ENST00000530304 TIAM2Q8IVF5 1701 aa22.33■■□□□ 1.17
PCF11-203ENST00000530304 CRACR2BQ8N4Y2 399 aaPredicted RBP22.33■■□□□ 1.17
PCF11-203ENST00000530304 DNAI1Q9UI46 699 aa22.33■■□□□ 1.17
PCF11-203ENST00000530304 SLIT2O94813 1529 aa22.33■■□□□ 1.17
PCF11-203ENST00000530304 ERICH2A1L162 156 aa22.33■■□□□ 1.16
PCF11-203ENST00000530304 BCAMP50895 628 aa22.33■■□□□ 1.16
PCF11-203ENST00000530304 NR5A1Q13285 461 aa22.33■■□□□ 1.16
PCF11-203ENST00000530304 HSP90AA4PQ58FG1 418 aa22.33■■□□□ 1.16
PCF11-203ENST00000530304 SUSD4Q5VX71 490 aa22.33■■□□□ 1.16
PCF11-203ENST00000530304 PCDHB6Q9Y5E3 794 aa22.33■■□□□ 1.16
PCF11-203ENST00000530304 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP22.33■■□□□ 1.165e-7■■■□□ 15.5
PCF11-203ENST00000530304 PNPLA7Q6ZV29 1317 aa22.33■■□□□ 1.16
PCF11-203ENST00000530304 IGSF3O75054 1194 aa22.32■■□□□ 1.16
PCF11-203ENST00000530304 DEXIO95424 95 aa22.32■■□□□ 1.16
PCF11-203ENST00000530304 TRIM65Q6PJ69 517 aa22.32■■□□□ 1.16
PCF11-203ENST00000530304 SERTAD1Q9UHV2 236 aa22.32■■□□□ 1.16
PCF11-203ENST00000530304 PRR29P0C7W0 189 aa22.32■■□□□ 1.16
PCF11-203ENST00000530304 NT5DC1Q5TFE4 455 aa22.32■■□□□ 1.16
PCF11-203ENST00000530304 PHLPP2Q6ZVD8 1323 aa22.32■■□□□ 1.16
PCF11-203ENST00000530304 REXO1L1PQ8IX06 675 aa22.31■■□□□ 1.16
PCF11-203ENST00000530304 TMTC2Q8N394 836 aa22.31■■□□□ 1.16
PCF11-203ENST00000530304 MIGA1Q8NAN2 632 aa22.31■■□□□ 1.16
PCF11-203ENST00000530304 CCDC196A0A1B0GTZ2 297 aa22.31■■□□□ 1.16
PCF11-203ENST00000530304 SARSP49591 514 aaKnown RBP22.31■■□□□ 1.16
PCF11-203ENST00000530304 FMR1Q06787 632 aaKnown RBP eCLIP22.31■■□□□ 1.161e-6■■■■■ 35.7
PCF11-203ENST00000530304 FANCBQ8NB91 859 aa22.31■■□□□ 1.16
PCF11-203ENST00000530304 NUP133Q8WUM0 1156 aa22.31■■□□□ 1.16
PCF11-203ENST00000530304 TMEM139Q8IV31 216 aa22.3■■□□□ 1.16
PCF11-203ENST00000530304 ZNF579Q8NAF0 562 aaKnown RBP22.3■■□□□ 1.16
PCF11-203ENST00000530304 KRT222Q8N1A0 295 aa22.3■■□□□ 1.16
PCF11-203ENST00000530304 MLKLQ8NB16 471 aa22.3■■□□□ 1.16
PCF11-203ENST00000530304 OXER1Q8TDS5 423 aa22.3■■□□□ 1.16
PCF11-203ENST00000530304 SMARCE1Q969G3 411 aa22.3■■□□□ 1.16
PCF11-203ENST00000530304 FAM53CQ9NYF3 392 aa22.3■■□□□ 1.16
PCF11-203ENST00000530304 NFE2L3Q9Y4A8 694 aa22.3■■□□□ 1.16
PCF11-203ENST00000530304 SRPRBQ9Y5M8 271 aaKnown RBP22.3■■□□□ 1.16
PCF11-203ENST00000530304 TBX2Q13207 712 aaPredicted RBP22.29■■□□□ 1.16
PCF11-203ENST00000530304 ZNF654Q8IZM8 581 aa22.29■■□□□ 1.16
PCF11-203ENST00000530304 MTA3Q9BTC8 594 aa22.29■■□□□ 1.16
PCF11-203ENST00000530304 LRP2BPQ9P2M1 347 aa22.29■■□□□ 1.16
PCF11-203ENST00000530304 FANCGO15287 622 aa22.29■■□□□ 1.16
PCF11-203ENST00000530304 ZNF18P17022 549 aa22.29■■□□□ 1.16
PCF11-203ENST00000530304 ATP2B1P20020 1258 aa22.29■■□□□ 1.16
PCF11-203ENST00000530304 MORC3Q14149 939 aa22.29■■□□□ 1.16
PCF11-203ENST00000530304 ZNF827Q17R98 1081 aa22.29■■□□□ 1.16
PCF11-203ENST00000530304 FCHSD1Q86WN1 690 aa22.29■■□□□ 1.16
PCF11-203ENST00000530304 GRAMD1CQ8IYS0 662 aa22.29■■□□□ 1.16
PCF11-203ENST00000530304 PDILTQ8N807 584 aa22.29■■□□□ 1.16
PCF11-203ENST00000530304 RNF41Q9H4P4 317 aaPredicted RBP22.29■■□□□ 1.16
PCF11-203ENST00000530304 ZNF446Q9NWS9 450 aa22.29■■□□□ 1.16
PCF11-203ENST00000530304 ARHGAP6O43182 974 aa22.28■■□□□ 1.16
PCF11-203ENST00000530304 H2AFXP16104 143 aaPredicted RBP22.28■■□□□ 1.16
PCF11-203ENST00000530304 CDK11BP21127 795 aaKnown RBP22.28■■□□□ 1.16
PCF11-203ENST00000530304 ENOX1Q8TC92 643 aaKnown RBP22.28■■□□□ 1.16
PCF11-203ENST00000530304 CABP5Q9NP86 173 aa22.28■■□□□ 1.16
PCF11-203ENST00000530304 DACH1Q9UI36 760 aa22.28■■□□□ 1.16
PCF11-203ENST00000530304 ZSCAN12O43309 604 aa22.28■■□□□ 1.16
PCF11-203ENST00000530304 KIF20AO95235 890 aa22.28■■□□□ 1.16
PCF11-203ENST00000530304 GABPB1Q06547 395 aaPredicted RBP22.28■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms