RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 ANGEL1Q9UNK9 670 aaKnown RBP16.23■□□□□ 0.19
USP48-213ENST00000529637 RIPOR2Q9Y4F9 1068 aa16.23■□□□□ 0.19
USP48-213ENST00000529637 PHACTR2O75167 634 aa16.23■□□□□ 0.19
USP48-213ENST00000529637 MYL5Q02045 173 aa16.23■□□□□ 0.19
USP48-213ENST00000529637 TRIM28Q13263 835 aaKnown RBP16.23■□□□□ 0.19
USP48-213ENST00000529637 PACS2Q86VP3 889 aa16.23■□□□□ 0.19
USP48-213ENST00000529637 TBC1D10CQ8IV04 446 aa16.23■□□□□ 0.19
USP48-213ENST00000529637 FOXP4Q8IVH2 680 aaPredicted RBP16.23■□□□□ 0.19
USP48-213ENST00000529637 CCDC12Q8WUD4 166 aaPredicted RBP16.23■□□□□ 0.19
USP48-213ENST00000529637 ANKZF1Q9H8Y5 726 aa16.23■□□□□ 0.19
USP48-213ENST00000529637 FBXO3Q9UK99 471 aa16.23■□□□□ 0.19
USP48-213ENST00000529637 WWC3Q9ULE0 1092 aa16.23■□□□□ 0.19
USP48-213ENST00000529637 CSF1RP07333 972 aa16.23■□□□□ 0.19
USP48-213ENST00000529637 ADD2P35612 726 aa16.23■□□□□ 0.19
USP48-213ENST00000529637 TRIM29Q14134 588 aa16.23■□□□□ 0.19
USP48-213ENST00000529637 PAXIP1Q6ZW49 1069 aaPredicted RBP16.23■□□□□ 0.19
USP48-213ENST00000529637 GOLGA1Q92805 767 aa16.23■□□□□ 0.19
USP48-213ENST00000529637 POLR3EQ9NVU0 708 aa16.23■□□□□ 0.19
USP48-213ENST00000529637 PSD3Q9NYI0 1048 aa16.23■□□□□ 0.19
USP48-213ENST00000529637 FAN1Q9Y2M0 1017 aa16.23■□□□□ 0.19
USP48-213ENST00000529637 ANO1Q5XXA6 986 aa16.22■□□□□ 0.19
USP48-213ENST00000529637 CCDC102BQ68D86 513 aa16.22■□□□□ 0.19
USP48-213ENST00000529637 TC2NQ8N9U0 490 aa16.22■□□□□ 0.19
USP48-213ENST00000529637 PKD1L3Q7Z443 1732 aa16.22■□□□□ 0.19
USP48-213ENST00000529637 TTF1Q15361 905 aaPredicted RBP16.22■□□□□ 0.19
USP48-213ENST00000529637 TMEM67Q5HYA8 995 aa16.22■□□□□ 0.19
USP48-213ENST00000529637 BEND6Q5SZJ8 279 aaPredicted RBP16.22■□□□□ 0.19
USP48-213ENST00000529637 CYB5R4Q7L1T6 521 aa16.22■□□□□ 0.19
USP48-213ENST00000529637 KCPQ6ZWJ8 1503 aa16.22■□□□□ 0.19
USP48-213ENST00000529637 CCDC151A5D8V7 595 aa16.21■□□□□ 0.19
USP48-213ENST00000529637 FOXN1O15353 648 aa16.21■□□□□ 0.19
USP48-213ENST00000529637 PDE6AP16499 860 aa16.21■□□□□ 0.19
USP48-213ENST00000529637 BMP6P22004 513 aa16.21■□□□□ 0.19
USP48-213ENST00000529637 BRAPQ7Z569 592 aa16.21■□□□□ 0.19
USP48-213ENST00000529637 DZIP3Q86Y13 1208 aaKnown RBP16.21■□□□□ 0.19
USP48-213ENST00000529637 NAPBQ9H115 298 aa16.21■□□□□ 0.19
USP48-213ENST00000529637 SENP2Q9HC62 589 aa16.21■□□□□ 0.19
USP48-213ENST00000529637 LZTFL1Q9NQ48 299 aa16.21■□□□□ 0.19
USP48-213ENST00000529637 PLEKHG2Q9H7P9 1386 aa16.21■□□□□ 0.19
USP48-213ENST00000529637 PDE8BO95263 885 aa16.21■□□□□ 0.19
USP48-213ENST00000529637 CLIC6Q96NY7 704 aa16.21■□□□□ 0.19
USP48-213ENST00000529637 TUBE1Q9UJT0 475 aa16.21■□□□□ 0.19
USP48-213ENST00000529637 GOLGA8AA7E2F4 631 aa16.21■□□□□ 0.18
USP48-213ENST00000529637 YEATS4O95619 227 aa16.21■□□□□ 0.18
USP48-213ENST00000529637 CMA1P23946 247 aa16.21■□□□□ 0.18
USP48-213ENST00000529637 KIF23Q02241 960 aaPredicted RBP16.21■□□□□ 0.18
USP48-213ENST00000529637 TICAM2Q86XR7 235 aa16.21■□□□□ 0.18
USP48-213ENST00000529637 ZBTB43O43298 467 aa16.2■□□□□ 0.18
USP48-213ENST00000529637 ATP2B1P20020 1258 aa16.2■□□□□ 0.18
USP48-213ENST00000529637 SYKP43405 635 aa16.2■□□□□ 0.18
USP48-213ENST00000529637 SHC4Q6S5L8 630 aa16.2■□□□□ 0.18
USP48-213ENST00000529637 FCHSD1Q86WN1 690 aa16.2■□□□□ 0.18
USP48-213ENST00000529637 VPS37DQ86XT2 251 aa16.2■□□□□ 0.18
USP48-213ENST00000529637 MAGEB6Q8N7X4 407 aa16.2■□□□□ 0.18
USP48-213ENST00000529637 IQUBQ8NA54 791 aa16.2■□□□□ 0.18
USP48-213ENST00000529637 NKX2-3Q8TAU0 364 aa16.2■□□□□ 0.18
USP48-213ENST00000529637 ABCB6Q9NP58 842 aa16.2■□□□□ 0.18
USP48-213ENST00000529637 LAMB4A4D0S4 1761 aa16.2■□□□□ 0.18
USP48-213ENST00000529637 IFIT3O14879 490 aaKnown RBP16.2■□□□□ 0.18
USP48-213ENST00000529637 CBFA2T2O43439 604 aa16.2■□□□□ 0.18
USP48-213ENST00000529637 IARSP41252 1262 aaKnown RBP16.2■□□□□ 0.18
USP48-213ENST00000529637 GTF2A1P52655 376 aaPredicted RBP16.2■□□□□ 0.18
USP48-213ENST00000529637 CHMP4BP1P59074 171 aa16.2■□□□□ 0.18
USP48-213ENST00000529637 CTDSPL2Q05D32 466 aa16.2■□□□□ 0.18
USP48-213ENST00000529637 TBX2Q13207 712 aaPredicted RBP16.2■□□□□ 0.18
USP48-213ENST00000529637 DHX8Q14562 1220 aaKnown RBP16.2■□□□□ 0.18
USP48-213ENST00000529637 LEKR1Q6ZMV7 388 aa16.2■□□□□ 0.18
USP48-213ENST00000529637 IQSEC3Q9UPP2 1182 aaPredicted RBP16.2■□□□□ 0.18
USP48-213ENST00000529637 CDKL5O76039 1030 aa16.19■□□□□ 0.18
USP48-213ENST00000529637 MBD4O95243 580 aa16.19■□□□□ 0.18
USP48-213ENST00000529637 SKIDA1Q1XH10 827 aa16.19■□□□□ 0.18
USP48-213ENST00000529637 KRT40Q6A162 431 aa16.19■□□□□ 0.18
USP48-213ENST00000529637 ZKSCAN3Q9BRR0 538 aa16.19■□□□□ 0.18
USP48-213ENST00000529637 PLA2G12BQ9BX93 195 aa16.19■□□□□ 0.18
USP48-213ENST00000529637 SLC26A6Q9BXS9 759 aa16.19■□□□□ 0.18
USP48-213ENST00000529637 ZNF335Q9H4Z2 1342 aaPredicted RBP16.19■□□□□ 0.18
USP48-213ENST00000529637 ICE2Q659A1 982 aa16.19■□□□□ 0.18
USP48-213ENST00000529637 APOA5Q6Q788 366 aa16.19■□□□□ 0.18
USP48-213ENST00000529637 METTL16Q86W50 562 aaKnown RBP16.19■□□□□ 0.18
USP48-213ENST00000529637 ARMT1Q9H993 441 aa16.19■□□□□ 0.18
USP48-213ENST00000529637 SOWAHDA6NJG2 315 aa16.19■□□□□ 0.18
USP48-213ENST00000529637 PDE8AO60658 829 aa16.19■□□□□ 0.18
USP48-213ENST00000529637 CUTAO60888 179 aa16.19■□□□□ 0.18
USP48-213ENST00000529637 TDO2P48775 406 aa16.19■□□□□ 0.18
USP48-213ENST00000529637 SOS2Q07890 1332 aaPredicted RBP16.18■□□□□ 0.18
USP48-213ENST00000529637 EIF3CLB5ME19 914 aaKnown RBP16.18■□□□□ 0.18
USP48-213ENST00000529637 RHOXF2BP0C7M4 288 aa16.18■□□□□ 0.18
USP48-213ENST00000529637 LONRF3Q496Y0 759 aa16.18■□□□□ 0.18
USP48-213ENST00000529637 SPECC1Q5M775 1068 aa16.18■□□□□ 0.18
USP48-213ENST00000529637 TRMT44Q8IYL2 757 aaKnown RBP16.18■□□□□ 0.18
USP48-213ENST00000529637 EIF3CQ99613 913 aaKnown RBP16.18■□□□□ 0.18
USP48-213ENST00000529637 RHOXF2Q9BQY4 288 aa16.18■□□□□ 0.18
USP48-213ENST00000529637 NBPF3Q9H094 633 aa16.18■□□□□ 0.18
USP48-213ENST00000529637 SLC12A7Q9Y666 1083 aa16.18■□□□□ 0.18
USP48-213ENST00000529637 GLI3P10071 1580 aa16.18■□□□□ 0.18
USP48-213ENST00000529637 UBE2Q2LH0YL09 131 aa16.18■□□□□ 0.18
USP48-213ENST00000529637 MAP3K12Q12852 859 aa16.18■□□□□ 0.18
USP48-213ENST00000529637 PCDHA5Q9Y5H7 936 aa16.18■□□□□ 0.18
USP48-213ENST00000529637 ZMYM6O95789 1325 aa16.18■□□□□ 0.18
USP48-213ENST00000529637 STX10O60499 249 aa16.17■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 152.9 ms