RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 MIGA1Q8NAN2 632 aa25■■□□□ 1.59
VPS28-206ENST00000526734 DDX24Q9GZR7 859 aaKnown RBP eCLIP25■■□□□ 1.594e-7■■■□□ 18.9
VPS28-206ENST00000526734 ZHX2Q9Y6X8 837 aa25■■□□□ 1.59
VPS28-206ENST00000526734 DOCK1Q14185 1865 aa25■■□□□ 1.59
VPS28-206ENST00000526734 USP5P45974 858 aa24.99■■□□□ 1.59
VPS28-206ENST00000526734 SP3Q02447 781 aa24.99■■□□□ 1.59
VPS28-206ENST00000526734 FOCADQ5VW36 1801 aa24.99■■□□□ 1.59
VPS28-206ENST00000526734 FASTKD5Q7L8L6 764 aaKnown RBP24.99■■□□□ 1.59
VPS28-206ENST00000526734 TRIM34Q9BYJ4 488 aa24.99■■□□□ 1.59
VPS28-206ENST00000526734 BCL11AQ9H165 835 aa24.99■■□□□ 1.59
VPS28-206ENST00000526734 BOLA2Q9H3K6 86 aa24.99■■□□□ 1.59
VPS28-206ENST00000526734 ECHDC1Q9NTX5 307 aa24.99■■□□□ 1.59
VPS28-206ENST00000526734 GINM1Q9NU53 330 aa24.99■■□□□ 1.59
VPS28-206ENST00000526734 MYO5AQ9Y4I1 1855 aaKnown RBP24.99■■□□□ 1.59
VPS28-206ENST00000526734 TLR2O60603 784 aa24.98■■□□□ 1.59
VPS28-206ENST00000526734 FBXO46Q6PJ61 603 aaPredicted RBP24.98■■□□□ 1.59
VPS28-206ENST00000526734 RIOK1Q9BRS2 568 aaKnown RBP24.98■■□□□ 1.59
VPS28-206ENST00000526734 AFG3L2Q9Y4W6 797 aa24.98■■□□□ 1.59
VPS28-206ENST00000526734 PCDHB15Q9Y5E8 787 aa24.98■■□□□ 1.59
VPS28-206ENST00000526734 A0A0G2JLL6 359 aaPredicted RBP24.97■■□□□ 1.59
VPS28-206ENST00000526734 MAGEB6P1A0A0J9YX57 407 aa24.97■■□□□ 1.59
VPS28-206ENST00000526734 CCDC85CA6NKD9 419 aa24.97■■□□□ 1.59
VPS28-206ENST00000526734 CAP2P40123 477 aa24.97■■□□□ 1.59
VPS28-206ENST00000526734 PRRT2Q7Z6L0 340 aaPredicted RBP24.97■■□□□ 1.59
VPS28-206ENST00000526734 CRACR2BQ8N4Y2 399 aaPredicted RBP24.97■■□□□ 1.59
VPS28-206ENST00000526734 CRNKL1Q9BZJ0 848 aaKnown RBP24.97■■□□□ 1.59
VPS28-206ENST00000526734 ZNF532Q9HCE3 1301 aa24.96■■□□□ 1.59
VPS28-206ENST00000526734 FAM196BA6NMK8 535 aa24.96■■□□□ 1.59
VPS28-206ENST00000526734 SMARCA5O60264 1052 aaPredicted RBP24.96■■□□□ 1.59
VPS28-206ENST00000526734 CRBNQ96SW2 442 aa24.96■■□□□ 1.59
VPS28-206ENST00000526734 SLC45A1Q9Y2W3 748 aa24.96■■□□□ 1.59
VPS28-206ENST00000526734 PDHXO00330 501 aa24.95■■□□□ 1.58
VPS28-206ENST00000526734 MOGSQ13724 837 aa24.95■■□□□ 1.58
VPS28-206ENST00000526734 ZSCAN25Q6NSZ9 544 aa24.95■■□□□ 1.58
VPS28-206ENST00000526734 TTC6Q86TZ1 520 aa24.95■■□□□ 1.58
VPS28-206ENST00000526734 PARK7Q99497 189 aaKnown RBP24.95■■□□□ 1.58
VPS28-206ENST00000526734 EHD4Q9H223 541 aa24.95■■□□□ 1.58
VPS28-206ENST00000526734 AS3MTQ9HBK9 375 aa24.95■■□□□ 1.58
VPS28-206ENST00000526734 PALD1Q9ULE6 856 aa24.95■■□□□ 1.58
VPS28-206ENST00000526734 CDK5RAP2Q96SN8 1893 aa24.94■■□□□ 1.58
VPS28-206ENST00000526734 TCRBV5S4A2TA0A5A2 114 aa24.94■■□□□ 1.58
VPS28-206ENST00000526734 ASNSP08243 561 aa24.94■■□□□ 1.58
VPS28-206ENST00000526734 SLURP2P0DP57 97 aa24.94■■□□□ 1.58
VPS28-206ENST00000526734 TAOK2Q9UL54 1235 aa24.94■■□□□ 1.58
VPS28-206ENST00000526734 TRIM17Q9Y577 477 aa24.94■■□□□ 1.58
VPS28-206ENST00000526734 USP17L5A8MUK1 530 aa24.93■■□□□ 1.58
VPS28-206ENST00000526734 ADD2P35612 726 aa24.93■■□□□ 1.58
VPS28-206ENST00000526734 UBE3CQ15386 1083 aa24.93■■□□□ 1.58
VPS28-206ENST00000526734 OTOP1Q7RTM1 612 aa24.93■■□□□ 1.58
VPS28-206ENST00000526734 CD99L2Q8TCZ2 262 aa24.93■■□□□ 1.58
VPS28-206ENST00000526734 EDC3Q96F86 508 aaKnown RBP24.93■■□□□ 1.58
VPS28-206ENST00000526734 SAP30BPQ9UHR5 308 aaKnown RBP24.93■■□□□ 1.58
VPS28-206ENST00000526734 HPS5Q9UPZ3 1129 aa24.93■■□□□ 1.58
VPS28-206ENST00000526734 KIF22Q14807 665 aa24.92■■□□□ 1.58
VPS28-206ENST00000526734 ZNF280CQ8ND82 737 aa24.92■■□□□ 1.58
VPS28-206ENST00000526734 DNAJC18Q9H819 358 aa24.92■■□□□ 1.58
VPS28-206ENST00000526734 EFCC1Q9HA90 598 aa24.92■■□□□ 1.58
VPS28-206ENST00000526734 SERPINB13Q9UIV8 391 aa24.92■■□□□ 1.58
VPS28-206ENST00000526734 SIPA1L1O43166 1804 aa24.91■■□□□ 1.58
VPS28-206ENST00000526734 TTC41PQ6P2S7 1318 aa24.91■■□□□ 1.58
VPS28-206ENST00000526734 TRIM75PA6NK02 468 aa24.91■■□□□ 1.58
VPS28-206ENST00000526734 GPAT2Q6NUI2 795 aa24.91■■□□□ 1.58
VPS28-206ENST00000526734 PROCA1Q8NCQ7 364 aaPredicted RBP24.91■■□□□ 1.58
VPS28-206ENST00000526734 ZBTB47Q9UFB7 747 aaPredicted RBP24.91■■□□□ 1.58
VPS28-206ENST00000526734 GNRH1P01148 92 aa24.9■■□□□ 1.58
VPS28-206ENST00000526734 HDAC1Q13547 482 aaPredicted RBP24.9■■□□□ 1.58
VPS28-206ENST00000526734 GADL1Q6ZQY3 521 aa24.9■■□□□ 1.58
VPS28-206ENST00000526734 GCC1Q96CN9 775 aa24.9■■□□□ 1.58
VPS28-206ENST00000526734 WDR18Q9BV38 432 aa24.9■■□□□ 1.58
VPS28-206ENST00000526734 AGTPBP1Q9UPW5 1226 aa24.9■■□□□ 1.58
VPS28-206ENST00000526734 ADGRA2Q96PE1 1338 aa24.89■■□□□ 1.58
VPS28-206ENST00000526734 ERC2O15083 957 aa24.89■■□□□ 1.58
VPS28-206ENST00000526734 C17orf99Q6UX52 265 aa24.89■■□□□ 1.58
VPS28-206ENST00000526734 PHIPQ8WWQ0 1821 aa24.89■■□□□ 1.57
VPS28-206ENST00000526734 SPP2Q13103 211 aa24.88■■□□□ 1.57
VPS28-206ENST00000526734 PABPC4Q13310 644 aaKnown RBP eCLIP24.88■■□□□ 1.57
VPS28-206ENST00000526734 RRP1BQ14684 758 aaKnown RBP24.88■■□□□ 1.57
VPS28-206ENST00000526734 LRRFIP1Q32MZ4 808 aaKnown RBP24.88■■□□□ 1.57
VPS28-206ENST00000526734 TATDN1Q6P1N9 297 aa24.88■■□□□ 1.57
VPS28-206ENST00000526734 ATP8A2Q9NTI2 1148 aa24.88■■□□□ 1.57
VPS28-206ENST00000526734 PNMA3Q9UL41 463 aa24.88■■□□□ 1.57
VPS28-206ENST00000526734 DDX60LQ5H9U9 1706 aaKnown RBP24.87■■□□□ 1.57
VPS28-206ENST00000526734 POLR3DP05423 398 aaPredicted RBP24.87■■□□□ 1.57
VPS28-206ENST00000526734 LACTBP83111 547 aaPredicted RBP24.87■■□□□ 1.57
VPS28-206ENST00000526734 SH3D19Q5HYK7 790 aa24.87■■□□□ 1.57
VPS28-206ENST00000526734 LCORLQ8N3X6 602 aa24.87■■□□□ 1.57
VPS28-206ENST00000526734 KBTBD3Q8NAB2 608 aa24.87■■□□□ 1.57
VPS28-206ENST00000526734 FRMD4AQ9P2Q2 1039 aaPredicted RBP24.87■■□□□ 1.57
VPS28-206ENST00000526734 ZBTB21Q9ULJ3 1066 aa24.87■■□□□ 1.57
VPS28-206ENST00000526734 PTPN22Q9Y2R2 807 aa24.87■■□□□ 1.57
VPS28-206ENST00000526734 MYH1P12882 1939 aa24.86■■□□□ 1.57
VPS28-206ENST00000526734 MBD4O95243 580 aa24.86■■□□□ 1.57
VPS28-206ENST00000526734 ZFYP08048 801 aaPredicted RBP24.86■■□□□ 1.57
VPS28-206ENST00000526734 RGS19P49795 217 aa24.86■■□□□ 1.57
VPS28-206ENST00000526734 PRMT2P55345 433 aa24.86■■□□□ 1.57
VPS28-206ENST00000526734 CCDC84Q86UT8 332 aaPredicted RBP24.86■■□□□ 1.57
VPS28-206ENST00000526734 DDRGK1Q96HY6 314 aa24.86■■□□□ 1.57
VPS28-206ENST00000526734 MCM9Q9NXL9 1143 aa24.86■■□□□ 1.57
VPS28-206ENST00000526734 ATAD5Q96QE3 1844 aa24.86■■□□□ 1.57
VPS28-206ENST00000526734 PTPRFP10586 1907 aa24.85■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 116.6 ms