RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 NT5C1AQ9BXI3 368 aa7.22□□□□□ -1.25
CD44-215ENST00000525241 LRRC3Q9BY71 257 aa7.22□□□□□ -1.25
CD44-215ENST00000525241 TGIF2Q9GZN2 237 aa7.22□□□□□ -1.25
CD44-215ENST00000525241 WNT10AQ9GZT5 417 aa7.22□□□□□ -1.25
CD44-215ENST00000525241 UBP1Q9NZI7 540 aa7.22□□□□□ -1.25
CD44-215ENST00000525241 TACC3Q9Y6A5 838 aa7.22□□□□□ -1.25
CD44-215ENST00000525241 TLR3O15455 904 aaKnown RBP7.21□□□□□ -1.26
CD44-215ENST00000525241 DYNC1LI2O43237 492 aaPredicted RBP7.21□□□□□ -1.26
CD44-215ENST00000525241 RNGTTO60942 597 aaKnown RBP7.21□□□□□ -1.26
CD44-215ENST00000525241 BPNT1O95861 308 aa7.21□□□□□ -1.26
CD44-215ENST00000525241 MAP7Q14244 749 aa7.21□□□□□ -1.26
CD44-215ENST00000525241 DIEXFQ68CQ4 756 aaKnown RBP7.21□□□□□ -1.26
CD44-215ENST00000525241 REC114Q7Z4M0 266 aa7.21□□□□□ -1.26
CD44-215ENST00000525241 UBE3DQ7Z6J8 389 aa7.21□□□□□ -1.26
CD44-215ENST00000525241 PICK1Q9NRD5 415 aa7.21□□□□□ -1.26
CD44-215ENST00000525241 DAGLAQ9Y4D2 1042 aa7.21□□□□□ -1.26
CD44-215ENST00000525241 ERCC5P28715 1186 aaPredicted RBP7.2□□□□□ -1.26
CD44-215ENST00000525241 GRK4P32298 578 aa7.2□□□□□ -1.26
CD44-215ENST00000525241 NFKBIBQ15653 356 aa7.2□□□□□ -1.26
CD44-215ENST00000525241 PAOXQ6QHF9 649 aa7.2□□□□□ -1.26
CD44-215ENST00000525241 NPM2Q86SE8 214 aaKnown RBP7.2□□□□□ -1.26
CD44-215ENST00000525241 ZNF507Q8TCN5 953 aa7.2□□□□□ -1.26
CD44-215ENST00000525241 LGR6Q9HBX8 967 aa7.2□□□□□ -1.26
CD44-215ENST00000525241 C1GALT1Q9NS00 363 aa7.2□□□□□ -1.26
CD44-215ENST00000525241 PCOLCE2Q9UKZ9 415 aa7.2□□□□□ -1.26
CD44-215ENST00000525241 POLR3KQ9Y2Y1 108 aaPredicted RBP7.2□□□□□ -1.26
CD44-215ENST00000525241 APOBRQ0VD83 1088 aa7.19□□□□□ -1.26
CD44-215ENST00000525241 PAK2Q13177 524 aa7.19□□□□□ -1.26
CD44-215ENST00000525241 RNF43Q68DV7 783 aa7.19□□□□□ -1.26
CD44-215ENST00000525241 SLITRK4Q8IW52 837 aa7.19□□□□□ -1.26
CD44-215ENST00000525241 PHF6Q8IWS0 365 aaKnown RBP eCLIP7.19□□□□□ -1.26
CD44-215ENST00000525241 ACBD3Q9H3P7 528 aa7.19□□□□□ -1.26
CD44-215ENST00000525241 FBRSQ9HAH7 460 aa7.19□□□□□ -1.26
CD44-215ENST00000525241 PRKAG2Q9UGJ0 569 aa7.19□□□□□ -1.26
CD44-215ENST00000525241 CORINQ9Y5Q5 1042 aa7.19□□□□□ -1.26
CD44-215ENST00000525241 PRR36Q9H6K5 1346 aa7.19□□□□□ -1.26
CD44-215ENST00000525241 FSTP19883 344 aa7.18□□□□□ -1.26
CD44-215ENST00000525241 ETF1P62495 437 aaKnown RBP7.18□□□□□ -1.26
CD44-215ENST00000525241 CWF19L2Q2TBE0 894 aaKnown RBP7.18□□□□□ -1.26
CD44-215ENST00000525241 SEZ6Q53EL9 994 aa7.18□□□□□ -1.26
CD44-215ENST00000525241 GATA6Q92908 595 aa7.18□□□□□ -1.26
CD44-215ENST00000525241 PSMG3-AS1Q96PY0 264 aa7.18□□□□□ -1.26
CD44-215ENST00000525241 SEMA6BQ9H3T3 888 aa7.18□□□□□ -1.26
CD44-215ENST00000525241 BRMS1Q9HCU9 246 aa7.18□□□□□ -1.26
CD44-215ENST00000525241 SSU72Q9NP77 194 aaKnown RBP7.18□□□□□ -1.26
CD44-215ENST00000525241 GRIN3BO60391 1043 aa7.17□□□□□ -1.26
CD44-215ENST00000525241 ITGB7P26010 798 aa7.17□□□□□ -1.26
CD44-215ENST00000525241 ADMP35318 185 aa7.17□□□□□ -1.26
CD44-215ENST00000525241 TNNI2P48788 182 aa7.17□□□□□ -1.26
CD44-215ENST00000525241 PDE4BQ07343 736 aa7.17□□□□□ -1.26
CD44-215ENST00000525241 NFIAQ12857 509 aa7.17□□□□□ -1.26
CD44-215ENST00000525241 NKG7Q16617 165 aa7.17□□□□□ -1.26
CD44-215ENST00000525241 CDC37L1Q7L3B6 337 aa7.17□□□□□ -1.26
CD44-215ENST00000525241 SHISA5Q8N114 240 aa7.17□□□□□ -1.26
CD44-215ENST00000525241 KCT2Q8NC54 265 aa7.17□□□□□ -1.26
CD44-215ENST00000525241 NKD1Q969G9 470 aa7.17□□□□□ -1.26
CD44-215ENST00000525241 CCSER2Q9H7U1 834 aa7.17□□□□□ -1.26
CD44-215ENST00000525241 IGLV1-40P01703 118 aa7.16□□□□□ -1.26
CD44-215ENST00000525241 PGRP06401 933 aa7.16□□□□□ -1.26
CD44-215ENST00000525241 CAP2P40123 477 aa7.16□□□□□ -1.26
CD44-215ENST00000525241 GJA8P48165 433 aa7.16□□□□□ -1.26
CD44-215ENST00000525241 SLBPQ14493 270 aaKnown RBP eCLIP7.16□□□□□ -1.26
CD44-215ENST00000525241 HID1Q8IV36 788 aa7.16□□□□□ -1.26
CD44-215ENST00000525241 MFSD14AQ96MC6 490 aa7.16□□□□□ -1.26
CD44-215ENST00000525241 TJP2Q9UDY2 1190 aa7.16□□□□□ -1.26
CD44-215ENST00000525241 ADAM30Q9UKF2 790 aa7.16□□□□□ -1.26
CD44-215ENST00000525241 ATE1O95260 518 aa7.15□□□□□ -1.26
CD44-215ENST00000525241 HTR3BO95264 441 aa7.15□□□□□ -1.26
CD44-215ENST00000525241 PLCG1P19174 1290 aa7.15□□□□□ -1.26
CD44-215ENST00000525241 CDK5R2Q13319 367 aa7.15□□□□□ -1.26
CD44-215ENST00000525241 PRSS36Q5K4E3 855 aa7.15□□□□□ -1.26
CD44-215ENST00000525241 TMEM201Q5SNT2 666 aa7.15□□□□□ -1.26
CD44-215ENST00000525241 ZAR1Q86SH2 424 aa7.15□□□□□ -1.26
CD44-215ENST00000525241 SLC51AQ86UW1 340 aa7.15□□□□□ -1.26
CD44-215ENST00000525241 MRPL41Q8IXM3 137 aaKnown RBP7.15□□□□□ -1.26
CD44-215ENST00000525241 REXO1Q8N1G1 1221 aaKnown RBP7.15□□□□□ -1.26
CD44-215ENST00000525241 RASGRP4Q8TDF6 673 aa7.15□□□□□ -1.26
CD44-215ENST00000525241 ACSF2Q96CM8 615 aaPredicted RBP7.15□□□□□ -1.26
CD44-215ENST00000525241 GPRASP2Q96D09 838 aa7.15□□□□□ -1.26
CD44-215ENST00000525241 TBC1D32Q96NH3 1257 aa7.15□□□□□ -1.26
CD44-215ENST00000525241 DBNDD2Q9BQY9 259 aa7.15□□□□□ -1.26
CD44-215ENST00000525241 EHMT1Q9H9B1 1298 aa7.15□□□□□ -1.26
CD44-215ENST00000525241 REV1Q9UBZ9 1251 aa7.15□□□□□ -1.26
CD44-215ENST00000525241 PCDHB14Q9Y5E9 798 aa7.15□□□□□ -1.26
CD44-215ENST00000525241 K7ELQ4 463 aaPredicted RBP7.14□□□□□ -1.27
CD44-215ENST00000525241 GSC2O15499 205 aa7.14□□□□□ -1.27
CD44-215ENST00000525241 F13BP05160 661 aa7.14□□□□□ -1.27
CD44-215ENST00000525241 CLCQ05315 142 aa7.14□□□□□ -1.27
CD44-215ENST00000525241 MCATQ8IVS2 390 aaKnown RBP7.14□□□□□ -1.27
CD44-215ENST00000525241 TMEM87BQ96K49 555 aa7.14□□□□□ -1.27
CD44-215ENST00000525241 INPP5FQ9Y2H2 1132 aa7.14□□□□□ -1.27
CD44-215ENST00000525241 LRIG2O94898 1065 aa7.13□□□□□ -1.27
CD44-215ENST00000525241 CST3P01034 146 aaPredicted RBP7.13□□□□□ -1.27
CD44-215ENST00000525241 MCM4P33991 863 aa7.13□□□□□ -1.27
CD44-215ENST00000525241 ZNF165P49910 485 aa7.13□□□□□ -1.27
CD44-215ENST00000525241 SLC6A19Q695T7 634 aa7.13□□□□□ -1.27
CD44-215ENST00000525241 GK5Q6ZS86 529 aa7.13□□□□□ -1.27
CD44-215ENST00000525241 ARMCX6Q7L4S7 300 aa7.13□□□□□ -1.27
CD44-215ENST00000525241 FBXL6Q8N531 539 aa7.13□□□□□ -1.27
CD44-215ENST00000525241 SHKBP1Q8TBC3 707 aa7.13□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms