RNA–Protein interactions for RNA: ENST00000519474.5

HDAC3-215, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 736 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-215ENST00000519474 CD99L2Q8TCZ2 262 aa11.38□□□□□ -0.59
HDAC3-215ENST00000519474 EDC3Q96F86 508 aaKnown RBP11.38□□□□□ -0.59
HDAC3-215ENST00000519474 DHX36Q9H2U1 1008 aaKnown RBP11.38□□□□□ -0.59
HDAC3-215ENST00000519474 BOLA2Q9H3K6 86 aa11.38□□□□□ -0.59
HDAC3-215ENST00000519474 ZCCHC17Q9NP64 241 aaKnown RBP11.38□□□□□ -0.59
HDAC3-215ENST00000519474 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.38□□□□□ -0.59
HDAC3-215ENST00000519474 PALD1Q9ULE6 856 aa11.38□□□□□ -0.59
HDAC3-215ENST00000519474 HPS5Q9UPZ3 1129 aa11.38□□□□□ -0.59
HDAC3-215ENST00000519474 CAP2P40123 477 aa11.37□□□□□ -0.59
HDAC3-215ENST00000519474 JAG1P78504 1218 aa11.37□□□□□ -0.59
HDAC3-215ENST00000519474 TTF1Q15361 905 aaPredicted RBP11.37□□□□□ -0.59
HDAC3-215ENST00000519474 FBXO46Q6PJ61 603 aaPredicted RBP11.37□□□□□ -0.59
HDAC3-215ENST00000519474 C17orf99Q6UX52 265 aa11.37□□□□□ -0.59
HDAC3-215ENST00000519474 CCDC84Q86UT8 332 aaPredicted RBP11.37□□□□□ -0.59
HDAC3-215ENST00000519474 YTHDC1Q96MU7 727 aaKnown RBP11.37□□□□□ -0.59
HDAC3-215ENST00000519474 LRRCC1Q9C099 1032 aa11.37□□□□□ -0.59
HDAC3-215ENST00000519474 PICK1Q9NRD5 415 aa11.37□□□□□ -0.59
HDAC3-215ENST00000519474 TRIM17Q9Y577 477 aa11.37□□□□□ -0.59
HDAC3-215ENST00000519474 A0A0G2JLL6 359 aaPredicted RBP11.36□□□□□ -0.59
HDAC3-215ENST00000519474 TCRBV5S4A2TA0A5A2 114 aa11.36□□□□□ -0.59
HDAC3-215ENST00000519474 PDHXO00330 501 aa11.36□□□□□ -0.59
HDAC3-215ENST00000519474 GOLIM4O00461 696 aa11.36□□□□□ -0.59
HDAC3-215ENST00000519474 RRP1P56182 461 aaKnown RBP11.36□□□□□ -0.59
HDAC3-215ENST00000519474 SLFNL1Q499Z3 407 aa11.36□□□□□ -0.59
HDAC3-215ENST00000519474 SLC9C2Q5TAH2 1124 aa11.36□□□□□ -0.59
HDAC3-215ENST00000519474 TMED8Q6PL24 325 aaPredicted RBP11.36□□□□□ -0.59
HDAC3-215ENST00000519474 PRRT2Q7Z6L0 340 aaPredicted RBP11.36□□□□□ -0.59
HDAC3-215ENST00000519474 ERO1AQ96HE7 468 aa11.36□□□□□ -0.59
HDAC3-215ENST00000519474 RIOK1Q9BRS2 568 aaKnown RBP11.36□□□□□ -0.59
HDAC3-215ENST00000519474 SAP30BPQ9UHR5 308 aaKnown RBP11.36□□□□□ -0.59
HDAC3-215ENST00000519474 HERC5Q9UII4 1024 aaKnown RBP11.36□□□□□ -0.59
HDAC3-215ENST00000519474 LAMB1P07942 1786 aa11.36□□□□□ -0.59
HDAC3-215ENST00000519474 FLT1P17948 1338 aa11.35□□□□□ -0.59
HDAC3-215ENST00000519474 PDE6AP16499 860 aa11.35□□□□□ -0.59
HDAC3-215ENST00000519474 SPP2Q13103 211 aa11.35□□□□□ -0.59
HDAC3-215ENST00000519474 FASTKD5Q7L8L6 764 aaKnown RBP11.35□□□□□ -0.59
HDAC3-215ENST00000519474 DNAJC2Q99543 621 aaKnown RBP11.35□□□□□ -0.59
HDAC3-215ENST00000519474 HAUS7Q99871 368 aa11.35□□□□□ -0.59
HDAC3-215ENST00000519474 DNAJC18Q9H819 358 aa11.35□□□□□ -0.59
HDAC3-215ENST00000519474 EFCC1Q9HA90 598 aa11.35□□□□□ -0.59
HDAC3-215ENST00000519474 PTPN22Q9Y2R2 807 aa11.35□□□□□ -0.59
HDAC3-215ENST00000519474 ZNF532Q9HCE3 1301 aa11.35□□□□□ -0.59
HDAC3-215ENST00000519474 COL2A1P02458 1487 aaPredicted RBP11.34□□□□□ -0.59
HDAC3-215ENST00000519474 USP17L5A8MUK1 530 aa11.34□□□□□ -0.59
HDAC3-215ENST00000519474 CHGBP05060 677 aa11.34□□□□□ -0.59
HDAC3-215ENST00000519474 CTGFP29279 349 aa11.34□□□□□ -0.59
HDAC3-215ENST00000519474 USP5P45974 858 aa11.34□□□□□ -0.59
HDAC3-215ENST00000519474 PLCD1P51178 756 aa11.34□□□□□ -0.59
HDAC3-215ENST00000519474 CERS3Q8IU89 383 aa11.34□□□□□ -0.59
HDAC3-215ENST00000519474 CRBNQ96SW2 442 aa11.34□□□□□ -0.59
HDAC3-215ENST00000519474 PAG1Q9NWQ8 432 aa11.34□□□□□ -0.59
HDAC3-215ENST00000519474 CPA4Q9UI42 421 aa11.34□□□□□ -0.59
HDAC3-215ENST00000519474 MAGEB6P1A0A0J9YX57 407 aa11.33□□□□□ -0.6
HDAC3-215ENST00000519474 TRIM75PA6NK02 468 aa11.33□□□□□ -0.6
HDAC3-215ENST00000519474 CYP2C8P10632 490 aa11.33□□□□□ -0.6
HDAC3-215ENST00000519474 ADD2P35612 726 aa11.33□□□□□ -0.6
HDAC3-215ENST00000519474 LACTBP83111 547 aaPredicted RBP11.33□□□□□ -0.6
HDAC3-215ENST00000519474 SHROOM1Q2M3G4 852 aaPredicted RBP11.33□□□□□ -0.6
HDAC3-215ENST00000519474 SLC4A8Q2Y0W8 1093 aa11.33□□□□□ -0.6
HDAC3-215ENST00000519474 SH3D19Q5HYK7 790 aa11.33□□□□□ -0.6
HDAC3-215ENST00000519474 TATDN1Q6P1N9 297 aa11.33□□□□□ -0.6
HDAC3-215ENST00000519474 GADL1Q6ZQY3 521 aa11.33□□□□□ -0.6
HDAC3-215ENST00000519474 ZNF280CQ8ND82 737 aa11.33□□□□□ -0.6
HDAC3-215ENST00000519474 WDR18Q9BV38 432 aa11.33□□□□□ -0.6
HDAC3-215ENST00000519474 ARHGAP39Q9C0H5 1083 aa11.33□□□□□ -0.6
HDAC3-215ENST00000519474 ADGRA2Q96PE1 1338 aa11.33□□□□□ -0.6
HDAC3-215ENST00000519474 BCRP11274 1271 aa11.32□□□□□ -0.6
HDAC3-215ENST00000519474 ARHGEF6Q15052 776 aa11.32□□□□□ -0.6
HDAC3-215ENST00000519474 TTC6Q86TZ1 520 aa11.32□□□□□ -0.6
HDAC3-215ENST00000519474 CRACR2BQ8N4Y2 399 aaPredicted RBP11.32□□□□□ -0.6
HDAC3-215ENST00000519474 ECHDC1Q9NTX5 307 aa11.32□□□□□ -0.6
HDAC3-215ENST00000519474 SLC45A1Q9Y2W3 748 aa11.32□□□□□ -0.6
HDAC3-215ENST00000519474 PRKAB2O43741 272 aa11.31□□□□□ -0.6
HDAC3-215ENST00000519474 ECM2O94769 699 aaPredicted RBP11.31□□□□□ -0.6
HDAC3-215ENST00000519474 HLA-DOAP06340 250 aa11.31□□□□□ -0.6
HDAC3-215ENST00000519474 NEFLP07196 543 aa11.31□□□□□ -0.6
HDAC3-215ENST00000519474 SOX10P56693 466 aa11.31□□□□□ -0.6
HDAC3-215ENST00000519474 EVX2Q03828 476 aa11.31□□□□□ -0.6
HDAC3-215ENST00000519474 GABPAQ06546 454 aa11.31□□□□□ -0.6
HDAC3-215ENST00000519474 TREML2Q5T2D2 321 aa11.31□□□□□ -0.6
HDAC3-215ENST00000519474 LCORLQ8N3X6 602 aa11.31□□□□□ -0.6
HDAC3-215ENST00000519474 SDR42E1Q8WUS8 393 aa11.31□□□□□ -0.6
HDAC3-215ENST00000519474 TBC1D2Q9BYX2 928 aa11.31□□□□□ -0.6
HDAC3-215ENST00000519474 ARMT1Q9H993 441 aa11.31□□□□□ -0.6
HDAC3-215ENST00000519474 DCP1AQ9NPI6 582 aaPredicted RBP11.31□□□□□ -0.6
HDAC3-215ENST00000519474 GINM1Q9NU53 330 aa11.31□□□□□ -0.6
HDAC3-215ENST00000519474 GDF11O95390 407 aa11.3□□□□□ -0.6
HDAC3-215ENST00000519474 POLR3DP05423 398 aaPredicted RBP11.3□□□□□ -0.6
HDAC3-215ENST00000519474 ASNSP08243 561 aa11.3□□□□□ -0.6
HDAC3-215ENST00000519474 PDIA4P13667 645 aaKnown RBP11.3□□□□□ -0.6
HDAC3-215ENST00000519474 KCNA4P22459 653 aa11.3□□□□□ -0.6
HDAC3-215ENST00000519474 PSMC4P43686 418 aa11.3□□□□□ -0.6
HDAC3-215ENST00000519474 HMGCS2P54868 508 aa11.3□□□□□ -0.6
HDAC3-215ENST00000519474 BACE1P56817 501 aa11.3□□□□□ -0.6
HDAC3-215ENST00000519474 MLLT1Q03111 559 aaPredicted RBP11.3□□□□□ -0.6
HDAC3-215ENST00000519474 KIF22Q14807 665 aa11.3□□□□□ -0.6
HDAC3-215ENST00000519474 UBE3CQ15386 1083 aa11.3□□□□□ -0.6
HDAC3-215ENST00000519474 PROCA1Q8NCQ7 364 aaPredicted RBP11.3□□□□□ -0.6
HDAC3-215ENST00000519474 TRIM47Q96LD4 638 aa11.3□□□□□ -0.6
HDAC3-215ENST00000519474 CRNKL1Q9BZJ0 848 aaKnown RBP11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 144.1 ms