RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 ZYXQ15942 572 aaKnown RBP10.74□□□□□ -0.69
NUP54-215ENST00000514313 ZC3H12AQ5D1E8 599 aaKnown RBP10.74□□□□□ -0.69
NUP54-215ENST00000514313 MAP4K3Q8IVH8 894 aa10.74□□□□□ -0.69
NUP54-215ENST00000514313 TAB3Q8N5C8 712 aaPredicted RBP10.74□□□□□ -0.69
NUP54-215ENST00000514313 ATG4CQ96DT6 458 aa10.74□□□□□ -0.69
NUP54-215ENST00000514313 SLC22A31A6NKX4 558 aa10.73□□□□□ -0.69
NUP54-215ENST00000514313 AOC2O75106 756 aa10.73□□□□□ -0.69
NUP54-215ENST00000514313 DEAF1O75398 565 aaPredicted RBP10.73□□□□□ -0.69
NUP54-215ENST00000514313 NME1P15531 152 aaKnown RBP10.73□□□□□ -0.69
NUP54-215ENST00000514313 GRK4P32298 578 aa10.73□□□□□ -0.69
NUP54-215ENST00000514313 CD68P34810 354 aaPredicted RBP10.73□□□□□ -0.69
NUP54-215ENST00000514313 CHMP4BP1P59074 171 aa10.73□□□□□ -0.69
NUP54-215ENST00000514313 MLECQ14165 292 aa10.73□□□□□ -0.69
NUP54-215ENST00000514313 TMEM201Q5SNT2 666 aa10.73□□□□□ -0.69
NUP54-215ENST00000514313 HP1BP3Q5SSJ5 553 aaPredicted RBP10.73□□□□□ -0.69
NUP54-215ENST00000514313 MRM1Q6IN84 353 aaKnown RBP10.73□□□□□ -0.69
NUP54-215ENST00000514313 NLRC3Q7RTR2 1065 aa10.73□□□□□ -0.69
NUP54-215ENST00000514313 FAM178BQ8IXR5 827 aa10.73□□□□□ -0.69
NUP54-215ENST00000514313 ANKRD13AQ8IZ07 590 aa10.73□□□□□ -0.69
NUP54-215ENST00000514313 KLHL3Q9UH77 587 aa10.73□□□□□ -0.69
NUP54-215ENST00000514313 CLSTN1O94985 981 aa10.72□□□□□ -0.69
NUP54-215ENST00000514313 PGRP06401 933 aa10.72□□□□□ -0.69
NUP54-215ENST00000514313 AMPD1P23109 780 aa10.72□□□□□ -0.69
NUP54-215ENST00000514313 MTERF2Q49AM1 385 aa10.72□□□□□ -0.69
NUP54-215ENST00000514313 UNC5AQ6ZN44 842 aa10.72□□□□□ -0.69
NUP54-215ENST00000514313 UBASH3BQ8TF42 649 aa10.72□□□□□ -0.69
NUP54-215ENST00000514313 SLC16A10Q8TF71 515 aa10.72□□□□□ -0.69
NUP54-215ENST00000514313 FANCLQ9NW38 375 aa10.72□□□□□ -0.69
NUP54-215ENST00000514313 HIF3AQ9Y2N7 669 aa10.72□□□□□ -0.69
NUP54-215ENST00000514313 BCRP11274 1271 aa10.71□□□□□ -0.69
NUP54-215ENST00000514313 RING1Q06587 406 aa10.71□□□□□ -0.69
NUP54-215ENST00000514313 PLEKHG4Q58EX7 1191 aa10.71□□□□□ -0.69
NUP54-215ENST00000514313 IRF7Q92985 503 aa10.71□□□□□ -0.69
NUP54-215ENST00000514313 CNNM2Q9H8M5 875 aa10.71□□□□□ -0.69
NUP54-215ENST00000514313 ADAM30Q9UKF2 790 aa10.71□□□□□ -0.69
NUP54-215ENST00000514313 LTBP3Q9NS15 1303 aa10.7□□□□□ -0.7
NUP54-215ENST00000514313 ESYT3A0FGR9 886 aa10.7□□□□□ -0.7
NUP54-215ENST00000514313 FAM86C2PA6NEL3 165 aa10.7□□□□□ -0.7
NUP54-215ENST00000514313 TNFRSF10CO14798 259 aa10.7□□□□□ -0.7
NUP54-215ENST00000514313 CDC45O75419 566 aa10.7□□□□□ -0.7
NUP54-215ENST00000514313 SLURP2P0DP57 97 aa10.7□□□□□ -0.7
NUP54-215ENST00000514313 ARSHQ5FYA8 562 aa10.7□□□□□ -0.7
NUP54-215ENST00000514313 PPM1JQ5JR12 505 aa10.7□□□□□ -0.7
NUP54-215ENST00000514313 CDCP2Q5VXM1 449 aa10.7□□□□□ -0.7
NUP54-215ENST00000514313 ACSF2Q96CM8 615 aaPredicted RBP10.7□□□□□ -0.7
NUP54-215ENST00000514313 GPATCH3Q96I76 525 aa10.7□□□□□ -0.7
NUP54-215ENST00000514313 SLC9A7Q96T83 725 aa10.7□□□□□ -0.7
NUP54-215ENST00000514313 WNT10AQ9GZT5 417 aa10.7□□□□□ -0.7
NUP54-215ENST00000514313 SLC12A7Q9Y666 1083 aa10.7□□□□□ -0.7
NUP54-215ENST00000514313 TMPRSS2O15393 492 aa10.69□□□□□ -0.7
NUP54-215ENST00000514313 SLFN14P0C7P3 912 aa10.69□□□□□ -0.7
NUP54-215ENST00000514313 ETF1P62495 437 aaKnown RBP10.69□□□□□ -0.7
NUP54-215ENST00000514313 ERVK-24P63145 666 aa10.69□□□□□ -0.7
NUP54-215ENST00000514313 ID3Q02535 119 aa10.69□□□□□ -0.7
NUP54-215ENST00000514313 SPATC1Q76KD6 591 aa10.69□□□□□ -0.7
NUP54-215ENST00000514313 PFDN2Q9UHV9 154 aa10.69□□□□□ -0.7
NUP54-215ENST00000514313 CHURC1-FNTBB4DL54 471 aa10.68□□□□□ -0.7
NUP54-215ENST00000514313 DIAPH1O60610 1272 aaKnown RBP10.68□□□□□ -0.7
NUP54-215ENST00000514313 DGKGP49619 791 aa10.68□□□□□ -0.7
NUP54-215ENST00000514313 SQSTM1Q13501 440 aa10.68□□□□□ -0.7
NUP54-215ENST00000514313 INTS3Q68E01 1043 aaKnown RBP10.68□□□□□ -0.7
NUP54-215ENST00000514313 VHLLQ6RSH7 139 aa10.68□□□□□ -0.7
NUP54-215ENST00000514313 APPBP2Q92624 585 aa10.68□□□□□ -0.7
NUP54-215ENST00000514313 RAD18Q9NS91 495 aa10.68□□□□□ -0.7
NUP54-215ENST00000514313 LRRC4BQ9NT99 713 aa10.68□□□□□ -0.7
NUP54-215ENST00000514313 TMEM260Q9NX78 707 aa10.68□□□□□ -0.7
NUP54-215ENST00000514313 PPP1R9AQ9ULJ8 1098 aa10.68□□□□□ -0.7
NUP54-215ENST00000514313 PCDHB10Q9UN67 800 aa10.68□□□□□ -0.7
NUP54-215ENST00000514313 LEMD3Q9Y2U8 911 aa10.68□□□□□ -0.7
NUP54-215ENST00000514313 SYNGAP1Q96PV0 1343 aa10.67□□□□□ -0.7
NUP54-215ENST00000514313 WISP1O95388 367 aa10.67□□□□□ -0.7
NUP54-215ENST00000514313 CELA2BP08218 269 aaPredicted RBP10.67□□□□□ -0.7
NUP54-215ENST00000514313 POLR2BP30876 1174 aaKnown RBP10.67□□□□□ -0.7
NUP54-215ENST00000514313 C2orf27AQ580R0 203 aa10.67□□□□□ -0.7
NUP54-215ENST00000514313 AKAP4Q5JQC9 854 aa10.67□□□□□ -0.7
NUP54-215ENST00000514313 ZBTB37Q5TC79 503 aa10.67□□□□□ -0.7
NUP54-215ENST00000514313 LYPD4Q6UWN0 246 aa10.67□□□□□ -0.7
NUP54-215ENST00000514313 DTWD1Q8N5C7 304 aa10.67□□□□□ -0.7
NUP54-215ENST00000514313 ST13P5Q8NFI4 369 aaPredicted RBP10.67□□□□□ -0.7
NUP54-215ENST00000514313 PICK1Q9NRD5 415 aa10.67□□□□□ -0.7
NUP54-215ENST00000514313 TJP2Q9UDY2 1190 aa10.67□□□□□ -0.7
NUP54-215ENST00000514313 KDM2BQ8NHM5 1336 aa10.66□□□□□ -0.7
NUP54-215ENST00000514313 HOXB4P17483 251 aaPredicted RBP10.66□□□□□ -0.7
NUP54-215ENST00000514313 NTF4P34130 210 aa10.66□□□□□ -0.7
NUP54-215ENST00000514313 EXOSC6Q5RKV6 272 aaKnown RBP10.66□□□□□ -0.7
NUP54-215ENST00000514313 HOMER1Q86YM7 354 aa10.66□□□□□ -0.7
NUP54-215ENST00000514313 FAM13CQ8NE31 585 aa10.66□□□□□ -0.7
NUP54-215ENST00000514313 PHAXQ9H814 394 aaKnown RBP10.66□□□□□ -0.7
NUP54-215ENST00000514313 ZMYM5Q9UJ78 669 aa10.66□□□□□ -0.7
NUP54-215ENST00000514313 RAG1P15918 1043 aa10.65□□□□□ -0.7
NUP54-215ENST00000514313 SSRP1Q08945 709 aaKnown RBP10.65□□□□□ -0.7
NUP54-215ENST00000514313 DUOXA2Q1HG44 320 aa10.65□□□□□ -0.7
NUP54-215ENST00000514313 TRAPPC3LQ5T215 181 aa10.65□□□□□ -0.7
NUP54-215ENST00000514313 ZNF787Q6DD87 383 aa10.65□□□□□ -0.7
NUP54-215ENST00000514313 THAP3Q8WTV1 239 aaPredicted RBP10.65□□□□□ -0.7
NUP54-215ENST00000514313 KLHL6Q8WZ60 621 aa10.65□□□□□ -0.7
NUP54-215ENST00000514313 TMPRSS13Q9BYE2 586 aa10.65□□□□□ -0.7
NUP54-215ENST00000514313 CRIM1Q9NZV1 1036 aa10.65□□□□□ -0.7
NUP54-215ENST00000514313 DLL1O00548 723 aa10.64□□□□□ -0.71
NUP54-215ENST00000514313 FANCGO15287 622 aa10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms