RNA–Protein interactions for RNA: ENST00000495528.1

VIM-207, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 962 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-207ENST00000495528 SLC7A3Q8WY07 619 aa9.52□□□□□ -0.89
VIM-207ENST00000495528 ROBO2Q9HCK4 1378 aa9.51□□□□□ -0.89
VIM-207ENST00000495528 COL8A1P27658 744 aa9.51□□□□□ -0.89
VIM-207ENST00000495528 RAC1P63000 192 aa9.51□□□□□ -0.89
VIM-207ENST00000495528 PSMD2Q13200 908 aa9.51□□□□□ -0.89
VIM-207ENST00000495528 VN1R5Q7Z5H4 357 aa9.51□□□□□ -0.89
VIM-207ENST00000495528 USP21Q9UK80 565 aa9.51□□□□□ -0.89
VIM-207ENST00000495528 NHSL1Q5SYE7 1610 aa9.51□□□□□ -0.89
VIM-207ENST00000495528 NEXMIFQ5QGS0 1516 aa9.51□□□□□ -0.89
VIM-207ENST00000495528 H3BRJ5 948 aa9.5□□□□□ -0.89
VIM-207ENST00000495528 IKBKEQ14164 716 aa9.5□□□□□ -0.89
VIM-207ENST00000495528 PRRT3Q5FWE3 981 aa9.5□□□□□ -0.89
VIM-207ENST00000495528 PRPF40BQ6NWY9 871 aaKnown RBP9.5□□□□□ -0.89
VIM-207ENST00000495528 FAM117BQ6P1L5 589 aa9.5□□□□□ -0.89
VIM-207ENST00000495528 C12orf49Q9H741 205 aa9.5□□□□□ -0.89
VIM-207ENST00000495528 AKAP2Q9Y2D5 859 aa9.5□□□□□ -0.89
VIM-207ENST00000495528 RNF225M0QZC1 329 aaPredicted RBP9.49□□□□□ -0.89
VIM-207ENST00000495528 DEAF1O75398 565 aaPredicted RBP9.49□□□□□ -0.89
VIM-207ENST00000495528 ZNF16P17020 682 aaPredicted RBP9.49□□□□□ -0.89
VIM-207ENST00000495528 EIF4BP23588 611 aaKnown RBP9.49□□□□□ -0.89
VIM-207ENST00000495528 HGSNATQ68CP4 663 aa9.49□□□□□ -0.89
VIM-207ENST00000495528 TRPC5Q9UL62 973 aaPredicted RBP9.49□□□□□ -0.89
VIM-207ENST00000495528 CLTCL1P53675 1640 aa9.49□□□□□ -0.89
VIM-207ENST00000495528 SPHKAPQ2M3C7 1700 aa9.48□□□□□ -0.89
VIM-207ENST00000495528 FSCN2O14926 492 aa9.48□□□□□ -0.89
VIM-207ENST00000495528 ZNF157P51786 506 aaPredicted RBP9.48□□□□□ -0.89
VIM-207ENST00000495528 SETDB1Q15047 1291 aa9.48□□□□□ -0.89
VIM-207ENST00000495528 GRIK4Q16099 956 aa9.48□□□□□ -0.89
VIM-207ENST00000495528 FMR1NBQ8N0W7 255 aaPredicted RBP9.48□□□□□ -0.89
VIM-207ENST00000495528 ZNF576Q9H609 170 aa9.48□□□□□ -0.89
VIM-207ENST00000495528 MRS2Q9HD23 443 aa9.48□□□□□ -0.89
VIM-207ENST00000495528 RPGRIP1LQ68CZ1 1315 aa9.48□□□□□ -0.89
VIM-207ENST00000495528 NAIPQ13075 1403 aa9.48□□□□□ -0.89
VIM-207ENST00000495528 PTCH1Q13635 1447 aa9.48□□□□□ -0.89
VIM-207ENST00000495528 SOX1O00570 391 aaPredicted RBP9.47□□□□□ -0.89
VIM-207ENST00000495528 GIPC1O14908 333 aa9.47□□□□□ -0.89
VIM-207ENST00000495528 USP17L7P0C7H9 530 aa9.47□□□□□ -0.89
VIM-207ENST00000495528 ITPKAP23677 461 aa9.47□□□□□ -0.89
VIM-207ENST00000495528 DAB2P98082 770 aa9.47□□□□□ -0.89
VIM-207ENST00000495528 PCDH1Q08174 1060 aa9.47□□□□□ -0.89
VIM-207ENST00000495528 GALNT11Q8NCW6 608 aa9.47□□□□□ -0.89
VIM-207ENST00000495528 FRMD6Q96NE9 622 aa9.47□□□□□ -0.89
VIM-207ENST00000495528 CLEC4MQ9H2X3 399 aaPredicted RBP9.47□□□□□ -0.89
VIM-207ENST00000495528 AK5Q9Y6K8 562 aa9.47□□□□□ -0.89
VIM-207ENST00000495528 NALCNQ8IZF0 1738 aa9.47□□□□□ -0.89
VIM-207ENST00000495528 ESRRAP11474 423 aaPredicted RBP9.46□□□□□ -0.9
VIM-207ENST00000495528 GSTT1P30711 240 aa9.46□□□□□ -0.9
VIM-207ENST00000495528 ZNF423Q2M1K9 1284 aa9.46□□□□□ -0.9
VIM-207ENST00000495528 FBXO11Q86XK2 927 aa9.46□□□□□ -0.9
VIM-207ENST00000495528 DTWD1Q8N5C7 304 aa9.46□□□□□ -0.9
VIM-207ENST00000495528 KLHDC7BQ96G42 594 aa9.46□□□□□ -0.9
VIM-207ENST00000495528 SEC31BQ9NQW1 1179 aa9.46□□□□□ -0.9
VIM-207ENST00000495528 FAM8A1Q9UBU6 413 aa9.46□□□□□ -0.9
VIM-207ENST00000495528 DDX3YO15523 660 aaKnown RBP9.45□□□□□ -0.9
VIM-207ENST00000495528 SPATA31C1P0DKV0 1188 aa9.45□□□□□ -0.9
VIM-207ENST00000495528 ARL4DP49703 201 aa9.45□□□□□ -0.9
VIM-207ENST00000495528 SHISA2Q6UWI4 295 aa9.45□□□□□ -0.9
VIM-207ENST00000495528 TMC4Q7Z404 712 aa9.45□□□□□ -0.9
VIM-207ENST00000495528 WAPLQ7Z5K2 1190 aa9.45□□□□□ -0.9
VIM-207ENST00000495528 SRCIN1Q9C0H9 1055 aa9.45□□□□□ -0.9
VIM-207ENST00000495528 VTI1BQ9UEU0 232 aa9.45□□□□□ -0.9
VIM-207ENST00000495528 NPHP3Q7Z494 1330 aa9.45□□□□□ -0.9
VIM-207ENST00000495528 HFM1A2PYH4 1435 aa9.45□□□□□ -0.9
VIM-207ENST00000495528 RBM47A0AV96 593 aaKnown RBP9.44□□□□□ -0.9
VIM-207ENST00000495528 SORBS3O60504 671 aa9.44□□□□□ -0.9
VIM-207ENST00000495528 FBXO24O75426 580 aa9.44□□□□□ -0.9
VIM-207ENST00000495528 ELNP15502 786 aa9.44□□□□□ -0.9
VIM-207ENST00000495528 RASSF7Q02833 373 aa9.44□□□□□ -0.9
VIM-207ENST00000495528 GSTM4Q03013 218 aa9.44□□□□□ -0.9
VIM-207ENST00000495528 C19orf57Q0VDD7 668 aa9.44□□□□□ -0.9
VIM-207ENST00000495528 FAAP100Q0VG06 881 aa9.44□□□□□ -0.9
VIM-207ENST00000495528 C3orf58Q8NDZ4 430 aa9.44□□□□□ -0.9
VIM-207ENST00000495528 STK26Q9P289 416 aa9.44□□□□□ -0.9
VIM-207ENST00000495528 GPN3Q9UHW5 284 aaPredicted RBP9.44□□□□□ -0.9
VIM-207ENST00000495528 ADGRF5Q8IZF2 1346 aa9.44□□□□□ -0.9
VIM-207ENST00000495528 ATRNO75882 1429 aa9.44□□□□□ -0.9
VIM-207ENST00000495528 PRAG1Q86YV5 1406 aa9.44□□□□□ -0.9
VIM-207ENST00000495528 RRBP1Q9P2E9 1410 aaKnown RBP9.44□□□□□ -0.9
VIM-207ENST00000495528 LAMC1P11047 1609 aa9.43□□□□□ -0.9
VIM-207ENST00000495528 MYOM2P54296 1465 aa9.43□□□□□ -0.9
VIM-207ENST00000495528 BCL9LQ86UU0 1499 aa9.43□□□□□ -0.9
VIM-207ENST00000495528 XRCC5P13010 732 aaKnown RBP9.43□□□□□ -0.9
VIM-207ENST00000495528 NLRP12P59046 1061 aa9.43□□□□□ -0.9
VIM-207ENST00000495528 PTPN12Q05209 780 aaKnown RBP9.43□□□□□ -0.9
VIM-207ENST00000495528 RGL3Q3MIN7 710 aa9.43□□□□□ -0.9
VIM-207ENST00000495528 TPTE2Q6XPS3 522 aa9.43□□□□□ -0.9
VIM-207ENST00000495528 MAP4K3Q8IVH8 894 aa9.43□□□□□ -0.9
VIM-207ENST00000495528 KCNK4Q9NYG8 393 aa9.43□□□□□ -0.9
VIM-207ENST00000495528 DLL1O00548 723 aa9.42□□□□□ -0.9
VIM-207ENST00000495528 CD68P34810 354 aaPredicted RBP9.42□□□□□ -0.9
VIM-207ENST00000495528 KCNMA1Q12791 1236 aa9.42□□□□□ -0.9
VIM-207ENST00000495528 FOXD4L6Q3SYB3 417 aaPredicted RBP9.42□□□□□ -0.9
VIM-207ENST00000495528 TMEM132EQ6IEE7 984 aa9.42□□□□□ -0.9
VIM-207ENST00000495528 FOXD4L3Q6VB84 417 aaPredicted RBP9.42□□□□□ -0.9
VIM-207ENST00000495528 KLHL23Q8NBE8 558 aa9.42□□□□□ -0.9
VIM-207ENST00000495528 WNT8BQ93098 351 aa9.42□□□□□ -0.9
VIM-207ENST00000495528 DCAF5Q96JK2 942 aa9.42□□□□□ -0.9
VIM-207ENST00000495528 SRA1Q9HD15 236 aaKnown RBP9.42□□□□□ -0.9
VIM-207ENST00000495528 TTF2Q9UNY4 1162 aaKnown RBP9.42□□□□□ -0.9
VIM-207ENST00000495528 KIF1BO60333 1816 aa9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms