RNA–Protein interactions for RNA: ENST00000494334.1

COL1A1-208, Transcript of collagen type I alpha 1 chain, humanhuman

TSL 2

Gene COL1A1, Length 396 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1-208ENST00000494334 CSADQ9Y600 493 aa16.28■□□□□ 0.2
COL1A1-208ENST00000494334 SNCAIPQ9Y6H5 919 aa16.28■□□□□ 0.2
COL1A1-208ENST00000494334 POLR3DP05423 398 aaPredicted RBP16.27■□□□□ 0.2
COL1A1-208ENST00000494334 SDSP20132 328 aa16.27■□□□□ 0.2
COL1A1-208ENST00000494334 PLCD1P51178 756 aa16.27■□□□□ 0.2
COL1A1-208ENST00000494334 KIF23Q02241 960 aaPredicted RBP16.27■□□□□ 0.2
COL1A1-208ENST00000494334 MKRN3Q13064 507 aaKnown RBP16.27■□□□□ 0.2
COL1A1-208ENST00000494334 SPRYD7Q5W111 196 aa16.27■□□□□ 0.2
COL1A1-208ENST00000494334 TTC6Q86TZ1 520 aa16.27■□□□□ 0.2
COL1A1-208ENST00000494334 WNK4Q96J92 1243 aa16.27■□□□□ 0.2
COL1A1-208ENST00000494334 DNAJC18Q9H819 358 aa16.27■□□□□ 0.2
COL1A1-208ENST00000494334 MYH7P12883 1935 aa16.27■□□□□ 0.19
COL1A1-208ENST00000494334 AK9Q5TCS8 1911 aa16.27■□□□□ 0.19
COL1A1-208ENST00000494334 GSG1L2A8MUP6 293 aa16.26■□□□□ 0.19
COL1A1-208ENST00000494334 GJA5P36382 358 aa16.26■□□□□ 0.19
COL1A1-208ENST00000494334 EVX2Q03828 476 aa16.26■□□□□ 0.19
COL1A1-208ENST00000494334 NOL9Q5SY16 702 aaKnown RBP16.26■□□□□ 0.19
COL1A1-208ENST00000494334 CNKSR2Q8WXI2 1034 aa16.26■□□□□ 0.19
COL1A1-208ENST00000494334 OPTNQ96CV9 577 aa16.26■□□□□ 0.19
COL1A1-208ENST00000494334 FAM227BQ96M60 508 aa16.26■□□□□ 0.19
COL1A1-208ENST00000494334 HELLSQ9NRZ9 838 aa16.26■□□□□ 0.19
COL1A1-208ENST00000494334 CDK5RAP2Q96SN8 1893 aa16.25■□□□□ 0.19
COL1A1-208ENST00000494334 FOCADQ5VW36 1801 aa16.25■□□□□ 0.19
COL1A1-208ENST00000494334 A0A0D9SFI3 127 aa16.25■□□□□ 0.19
COL1A1-208ENST00000494334 PATL2C9JE40 543 aaKnown RBP16.25■□□□□ 0.19
COL1A1-208ENST00000494334 CTNND1O60716 968 aaKnown RBP16.25■□□□□ 0.19
COL1A1-208ENST00000494334 ZBTB48P10074 688 aaPredicted RBP16.25■□□□□ 0.19
COL1A1-208ENST00000494334 GNAT2P19087 354 aa16.25■□□□□ 0.19
COL1A1-208ENST00000494334 NMIQ13287 307 aaPredicted RBP16.25■□□□□ 0.19
COL1A1-208ENST00000494334 RRP1BQ14684 758 aaKnown RBP16.25■□□□□ 0.19
COL1A1-208ENST00000494334 CCDC129Q6ZRS4 1044 aa16.25■□□□□ 0.19
COL1A1-208ENST00000494334 ERO1BQ86YB8 467 aa16.25■□□□□ 0.19
COL1A1-208ENST00000494334 CRACR2BQ8N4Y2 399 aaPredicted RBP16.25■□□□□ 0.19
COL1A1-208ENST00000494334 EHD4Q9H223 541 aa16.25■□□□□ 0.19
COL1A1-208ENST00000494334 SERPINB13Q9UIV8 391 aa16.25■□□□□ 0.19
COL1A1-208ENST00000494334 SPDYE5A6NIY4 337 aa16.24■□□□□ 0.19
COL1A1-208ENST00000494334 USP17L12C9JPN9 530 aa16.24■□□□□ 0.19
COL1A1-208ENST00000494334 USP17L21D6R901 530 aa16.24■□□□□ 0.19
COL1A1-208ENST00000494334 CYP2D6P10635 497 aa16.24■□□□□ 0.19
COL1A1-208ENST00000494334 MAP2K1Q02750 393 aaPredicted RBP16.24■□□□□ 0.19
COL1A1-208ENST00000494334 GABPAQ06546 454 aa16.24■□□□□ 0.19
COL1A1-208ENST00000494334 MCMDC2Q4G0Z9 681 aa16.24■□□□□ 0.19
COL1A1-208ENST00000494334 GIMAP6Q6P9H5 292 aa16.24■□□□□ 0.19
COL1A1-208ENST00000494334 CTR9Q6PD62 1173 aa16.24■□□□□ 0.19
COL1A1-208ENST00000494334 SCYL3Q8IZE3 742 aa16.24■□□□□ 0.19
COL1A1-208ENST00000494334 DDRGK1Q96HY6 314 aa16.24■□□□□ 0.19
COL1A1-208ENST00000494334 TRIM34Q9BYJ4 488 aa16.24■□□□□ 0.19
COL1A1-208ENST00000494334 EPB41L4AQ9HCS5 686 aaPredicted RBP16.24■□□□□ 0.19
COL1A1-208ENST00000494334 WBP1LQ9NX94 342 aa16.24■□□□□ 0.19
COL1A1-208ENST00000494334 CYP2D7A0A087X1C5 515 aa16.23■□□□□ 0.19
COL1A1-208ENST00000494334 SMIM22K7EJ46 135 aa16.23■□□□□ 0.19
COL1A1-208ENST00000494334 APPP05067 770 aa16.23■□□□□ 0.19
COL1A1-208ENST00000494334 CAP2P40123 477 aa16.23■□□□□ 0.19
COL1A1-208ENST00000494334 PPATQ06203 517 aa16.23■□□□□ 0.19
COL1A1-208ENST00000494334 C12orf60Q5U649 245 aa16.23■□□□□ 0.19
COL1A1-208ENST00000494334 IFNL3Q8IZI9 196 aa16.23■□□□□ 0.19
COL1A1-208ENST00000494334 OTUD5Q96G74 571 aa16.23■□□□□ 0.19
COL1A1-208ENST00000494334 OTOFQ9HC10 1997 aa16.22■□□□□ 0.19
COL1A1-208ENST00000494334 SIPA1L1O43166 1804 aa16.22■□□□□ 0.19
COL1A1-208ENST00000494334 HIP1O00291 1037 aa16.22■□□□□ 0.19
COL1A1-208ENST00000494334 PTPRAP18433 802 aa16.22■□□□□ 0.19
COL1A1-208ENST00000494334 SBK1Q52WX2 424 aa16.22■□□□□ 0.19
COL1A1-208ENST00000494334 TATDN1Q6P1N9 297 aa16.22■□□□□ 0.19
COL1A1-208ENST00000494334 CWC27Q6UX04 472 aaKnown RBP16.22■□□□□ 0.19
COL1A1-208ENST00000494334 ZNF589Q86UQ0 364 aaPredicted RBP16.22■□□□□ 0.19
COL1A1-208ENST00000494334 REM2Q8IYK8 340 aaPredicted RBP16.22■□□□□ 0.19
COL1A1-208ENST00000494334 PICK1Q9NRD5 415 aa16.22■□□□□ 0.19
COL1A1-208ENST00000494334 ARPP21Q9UBL0 812 aaPredicted RBP16.22■□□□□ 0.19
COL1A1-208ENST00000494334 THSD7BQ9C0I4 1608 aa16.22■□□□□ 0.19
COL1A1-208ENST00000494334 MANSC4A6NHS7 340 aaPredicted RBP16.21■□□□□ 0.19
COL1A1-208ENST00000494334 IRF6O14896 467 aa16.21■□□□□ 0.19
COL1A1-208ENST00000494334 FOXP2O15409 715 aa16.21■□□□□ 0.19
COL1A1-208ENST00000494334 HSPA1AP0DMV8 641 aaKnown RBP16.21■□□□□ 0.19
COL1A1-208ENST00000494334 HSPA1BP0DMV9 641 aaKnown RBP16.21■□□□□ 0.19
COL1A1-208ENST00000494334 SHMT1P34896 483 aa16.21■□□□□ 0.19
COL1A1-208ENST00000494334 TM4SF4P48230 202 aa16.21■□□□□ 0.19
COL1A1-208ENST00000494334 JAG1P78504 1218 aa16.21■□□□□ 0.19
COL1A1-208ENST00000494334 PPIL2Q13356 520 aa16.21■□□□□ 0.19
COL1A1-208ENST00000494334 VPS53Q5VIR6 699 aa16.21■□□□□ 0.19
COL1A1-208ENST00000494334 AMOTL1Q8IY63 956 aa16.21■□□□□ 0.19
COL1A1-208ENST00000494334 DYNLL2Q96FJ2 89 aa16.21■□□□□ 0.19
COL1A1-208ENST00000494334 MS4A4AQ96JQ5 239 aa16.21■□□□□ 0.19
COL1A1-208ENST00000494334 DIAPH3Q9NSV4 1193 aa16.21■□□□□ 0.19
COL1A1-208ENST00000494334 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.21■□□□□ 0.19
COL1A1-208ENST00000494334 MYH1P12882 1939 aa16.21■□□□□ 0.19
COL1A1-208ENST00000494334 DDX60LQ5H9U9 1706 aaKnown RBP16.2■□□□□ 0.18
COL1A1-208ENST00000494334 GDF11O95390 407 aa16.2■□□□□ 0.18
COL1A1-208ENST00000494334 TDO2P48775 406 aa16.2■□□□□ 0.18
COL1A1-208ENST00000494334 INHBEP58166 350 aa16.2■□□□□ 0.18
COL1A1-208ENST00000494334 CCDC84Q86UT8 332 aaPredicted RBP16.2■□□□□ 0.18
COL1A1-208ENST00000494334 NACAP1Q9BZK3 213 aa16.2■□□□□ 0.18
COL1A1-208ENST00000494334 ZHX2Q9Y6X8 837 aa16.2■□□□□ 0.18
COL1A1-208ENST00000494334 PCNTO95613 3336 aa16.19■□□□□ 0.18
COL1A1-208ENST00000494334 NAV1Q8NEY1 1877 aa16.19■□□□□ 0.18
COL1A1-208ENST00000494334 TESPA1A2RU30 521 aaPredicted RBP16.19■□□□□ 0.18
COL1A1-208ENST00000494334 MINDY4BA8MYZ0 360 aa16.19■□□□□ 0.18
COL1A1-208ENST00000494334 GTF2A2P52657 109 aa16.19■□□□□ 0.18
COL1A1-208ENST00000494334 SREBF2Q12772 1141 aa16.19■□□□□ 0.18
COL1A1-208ENST00000494334 SHROOM1Q2M3G4 852 aaPredicted RBP16.19■□□□□ 0.18
COL1A1-208ENST00000494334 CERKLQ49MI3 558 aaPredicted RBP16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms