RNA–Protein interactions for RNA: ENST00000491659.5

USP39-217, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 648 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-217ENST00000491659 ERO1AQ96HE7 468 aa18.32■□□□□ 0.52
USP39-217ENST00000491659 TRIM34Q9BYJ4 488 aa18.32■□□□□ 0.52
USP39-217ENST00000491659 PI4KBQ9UBF8 816 aa18.32■□□□□ 0.52
USP39-217ENST00000491659 CXCL11O14625 94 aa18.31■□□□□ 0.52
USP39-217ENST00000491659 SMARCA5O60264 1052 aaPredicted RBP18.31■□□□□ 0.52
USP39-217ENST00000491659 ATP5JP18859 108 aa18.31■□□□□ 0.52
USP39-217ENST00000491659 USP5P45974 858 aa18.31■□□□□ 0.52
USP39-217ENST00000491659 ANKRD23Q86SG2 305 aa18.31■□□□□ 0.52
USP39-217ENST00000491659 CRACR2BQ8N4Y2 399 aaPredicted RBP18.31■□□□□ 0.52
USP39-217ENST00000491659 DCTPP1Q9H773 170 aa18.31■□□□□ 0.52
USP39-217ENST00000491659 PAG1Q9NWQ8 432 aa18.31■□□□□ 0.52
USP39-217ENST00000491659 ZHX2Q9Y6X8 837 aa18.31■□□□□ 0.52
USP39-217ENST00000491659 HLA-DOAP06340 250 aa18.3■□□□□ 0.52
USP39-217ENST00000491659 PDE6AP16499 860 aa18.3■□□□□ 0.52
USP39-217ENST00000491659 SP3Q02447 781 aa18.3■□□□□ 0.52
USP39-217ENST00000491659 SLC9C2Q5TAH2 1124 aa18.3■□□□□ 0.52
USP39-217ENST00000491659 BOLA2Q9H3K6 86 aa18.3■□□□□ 0.52
USP39-217ENST00000491659 MAGEB6P1A0A0J9YX57 407 aa18.29■□□□□ 0.52
USP39-217ENST00000491659 FBXO46Q6PJ61 603 aaPredicted RBP18.29■□□□□ 0.52
USP39-217ENST00000491659 CD99L2Q8TCZ2 262 aa18.29■□□□□ 0.52
USP39-217ENST00000491659 GPATCH3Q96I76 525 aa18.29■□□□□ 0.52
USP39-217ENST00000491659 CRBNQ96SW2 442 aa18.29■□□□□ 0.52
USP39-217ENST00000491659 HAUS7Q99871 368 aa18.29■□□□□ 0.52
USP39-217ENST00000491659 DDX24Q9GZR7 859 aaKnown RBP eCLIP18.29■□□□□ 0.521e-6■■■□□ 14.8
USP39-217ENST00000491659 SAP30BPQ9UHR5 308 aaKnown RBP18.29■□□□□ 0.52
USP39-217ENST00000491659 TRIM17Q9Y577 477 aa18.29■□□□□ 0.52
USP39-217ENST00000491659 LOC285556D6RIA3 1793 aa18.29■□□□□ 0.52
USP39-217ENST00000491659 ZNF532Q9HCE3 1301 aa18.28■□□□□ 0.52
USP39-217ENST00000491659 A0A0G2JLL6 359 aaPredicted RBP18.28■□□□□ 0.52
USP39-217ENST00000491659 PDHXO00330 501 aa18.28■□□□□ 0.52
USP39-217ENST00000491659 TLR2O60603 784 aa18.28■□□□□ 0.52
USP39-217ENST00000491659 FASTKD5Q7L8L6 764 aaKnown RBP18.28■□□□□ 0.52
USP39-217ENST00000491659 PRRT2Q7Z6L0 340 aaPredicted RBP18.28■□□□□ 0.52
USP39-217ENST00000491659 EDC3Q96F86 508 aaKnown RBP18.28■□□□□ 0.52
USP39-217ENST00000491659 TBC1D2Q9BYX2 928 aa18.28■□□□□ 0.52
USP39-217ENST00000491659 PALD1Q9ULE6 856 aa18.28■□□□□ 0.52
USP39-217ENST00000491659 HPS5Q9UPZ3 1129 aa18.28■□□□□ 0.52
USP39-217ENST00000491659 AFG3L2Q9Y4W6 797 aa18.28■□□□□ 0.52
USP39-217ENST00000491659 PCDHB15Q9Y5E8 787 aa18.28■□□□□ 0.52
USP39-217ENST00000491659 TRIM75PA6NK02 468 aa18.27■□□□□ 0.52
USP39-217ENST00000491659 CAP2P40123 477 aa18.27■□□□□ 0.52
USP39-217ENST00000491659 ARHGEF6Q15052 776 aa18.27■□□□□ 0.52
USP39-217ENST00000491659 GADL1Q6ZQY3 521 aa18.27■□□□□ 0.52
USP39-217ENST00000491659 OTOP1Q7RTM1 612 aa18.27■□□□□ 0.52
USP39-217ENST00000491659 FOXP4Q8IVH2 680 aaPredicted RBP18.27■□□□□ 0.52
USP39-217ENST00000491659 PARK7Q99497 189 aaKnown RBP18.27■□□□□ 0.52
USP39-217ENST00000491659 RIOK1Q9BRS2 568 aaKnown RBP18.27■□□□□ 0.52
USP39-217ENST00000491659 CRNKL1Q9BZJ0 848 aaKnown RBP18.27■□□□□ 0.52
USP39-217ENST00000491659 ECHDC1Q9NTX5 307 aa18.27■□□□□ 0.52
USP39-217ENST00000491659 FRMD4AQ9P2Q2 1039 aaPredicted RBP18.27■□□□□ 0.52
USP39-217ENST00000491659 MOGSQ13724 837 aa18.26■□□□□ 0.51
USP39-217ENST00000491659 SLC4A8Q2Y0W8 1093 aa18.26■□□□□ 0.51
USP39-217ENST00000491659 CCDC84Q86UT8 332 aaPredicted RBP18.26■□□□□ 0.51
USP39-217ENST00000491659 EFCC1Q9HA90 598 aa18.26■□□□□ 0.51
USP39-217ENST00000491659 ZSWIM8A7E2V4 1837 aa18.26■□□□□ 0.51
USP39-217ENST00000491659 KIF22Q14807 665 aa18.25■□□□□ 0.51
USP39-217ENST00000491659 METTL16Q86W50 562 aaKnown RBP18.25■□□□□ 0.51
USP39-217ENST00000491659 DNAJC18Q9H819 358 aa18.25■□□□□ 0.51
USP39-217ENST00000491659 AS3MTQ9HBK9 375 aa18.25■□□□□ 0.51
USP39-217ENST00000491659 MYH8P13535 1937 aa18.25■□□□□ 0.51
USP39-217ENST00000491659 TCRBV5S4A2TA0A5A2 114 aa18.24■□□□□ 0.51
USP39-217ENST00000491659 USP17L5A8MUK1 530 aa18.24■□□□□ 0.51
USP39-217ENST00000491659 ASNSP08243 561 aa18.24■□□□□ 0.51
USP39-217ENST00000491659 ADD2P35612 726 aa18.24■□□□□ 0.51
USP39-217ENST00000491659 ZSCAN25Q6NSZ9 544 aa18.24■□□□□ 0.51
USP39-217ENST00000491659 GPAT2Q6NUI2 795 aa18.24■□□□□ 0.51
USP39-217ENST00000491659 TTC6Q86TZ1 520 aa18.24■□□□□ 0.51
USP39-217ENST00000491659 ZNF280CQ8ND82 737 aa18.24■□□□□ 0.51
USP39-217ENST00000491659 EHD4Q9H223 541 aa18.24■□□□□ 0.51
USP39-217ENST00000491659 GINM1Q9NU53 330 aa18.24■□□□□ 0.51
USP39-217ENST00000491659 RRP1BQ14684 758 aaKnown RBP18.23■□□□□ 0.51
USP39-217ENST00000491659 ZBTB47Q9UFB7 747 aaPredicted RBP18.23■□□□□ 0.51
USP39-217ENST00000491659 SERPINB13Q9UIV8 391 aa18.23■□□□□ 0.51
USP39-217ENST00000491659 SLC45A1Q9Y2W3 748 aa18.23■□□□□ 0.51
USP39-217ENST00000491659 ADGRA2Q96PE1 1338 aa18.23■□□□□ 0.51
USP39-217ENST00000491659 MGAMO43451 1857 aa18.22■□□□□ 0.51
USP39-217ENST00000491659 BAZ2AQ9UIF9 1905 aaKnown RBP18.22■□□□□ 0.51
USP39-217ENST00000491659 MBD4O95243 580 aa18.22■□□□□ 0.51
USP39-217ENST00000491659 GDF11O95390 407 aa18.22■□□□□ 0.51
USP39-217ENST00000491659 POLR3DP05423 398 aaPredicted RBP18.22■□□□□ 0.51
USP39-217ENST00000491659 SPP2Q13103 211 aa18.22■□□□□ 0.51
USP39-217ENST00000491659 C17orf99Q6UX52 265 aa18.22■□□□□ 0.51
USP39-217ENST00000491659 LCORLQ8N3X6 602 aa18.22■□□□□ 0.51
USP39-217ENST00000491659 PROCA1Q8NCQ7 364 aaPredicted RBP18.22■□□□□ 0.51
USP39-217ENST00000491659 CPA4Q9UI42 421 aa18.22■□□□□ 0.51
USP39-217ENST00000491659 AGTPBP1Q9UPW5 1226 aa18.22■□□□□ 0.51
USP39-217ENST00000491659 PTPN22Q9Y2R2 807 aa18.22■□□□□ 0.51
USP39-217ENST00000491659 CYP2C8P10632 490 aa18.21■□□□□ 0.51
USP39-217ENST00000491659 LACTBP83111 547 aaPredicted RBP18.21■□□□□ 0.51
USP39-217ENST00000491659 AAMPQ13685 434 aa18.21■□□□□ 0.51
USP39-217ENST00000491659 UBE3CQ15386 1083 aa18.21■□□□□ 0.51
USP39-217ENST00000491659 ARMT1Q9H993 441 aa18.21■□□□□ 0.51
USP39-217ENST00000491659 PNMA3Q9UL41 463 aa18.21■□□□□ 0.51
USP39-217ENST00000491659 ZBTB21Q9ULJ3 1066 aa18.21■□□□□ 0.51
USP39-217ENST00000491659 TTC41PQ6P2S7 1318 aa18.21■□□□□ 0.51
USP39-217ENST00000491659 HMGCS2P54868 508 aa18.2■□□□□ 0.5
USP39-217ENST00000491659 SOX10P56693 466 aa18.2■□□□□ 0.5
USP39-217ENST00000491659 PABPC4Q13310 644 aaKnown RBP eCLIP18.2■□□□□ 0.5
USP39-217ENST00000491659 TSHZ3Q63HK5 1081 aa18.2■□□□□ 0.5
USP39-217ENST00000491659 SMCR8Q8TEV9 937 aaPredicted RBP18.2■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms