RNA–Protein interactions for RNA: ENST00000485247.1

PTPN4-210, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 590 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-210ENST00000485247 DCPSQ96C86 337 aaKnown RBP7.22□□□□□ -1.25
PTPN4-210ENST00000485247 FMNL2Q96PY5 1086 aa7.22□□□□□ -1.25
PTPN4-210ENST00000485247 GPAMQ9HCL2 828 aa7.22□□□□□ -1.25
PTPN4-210ENST00000485247 USP16Q9Y5T5 823 aa7.22□□□□□ -1.25
PTPN4-210ENST00000485247 USP3Q9Y6I4 520 aa7.22□□□□□ -1.25
PTPN4-210ENST00000485247 ABCC12Q96J65 1359 aa7.21□□□□□ -1.25
PTPN4-210ENST00000485247 A0A1B0GTH6 734 aa7.21□□□□□ -1.26
PTPN4-210ENST00000485247 H0YGN5 161 aa7.21□□□□□ -1.26
PTPN4-210ENST00000485247 H7C1W4 665 aa7.21□□□□□ -1.26
PTPN4-210ENST00000485247 FKTNO75072 461 aa7.21□□□□□ -1.26
PTPN4-210ENST00000485247 HOXA10P31260 410 aaPredicted RBP7.21□□□□□ -1.26
PTPN4-210ENST00000485247 IL13P35225 146 aa7.21□□□□□ -1.26
PTPN4-210ENST00000485247 TEFQ10587 303 aa7.21□□□□□ -1.26
PTPN4-210ENST00000485247 HLFQ16534 295 aa7.21□□□□□ -1.26
PTPN4-210ENST00000485247 HDGFL1Q5TGJ6 251 aa7.21□□□□□ -1.26
PTPN4-210ENST00000485247 INTS3Q68E01 1043 aaKnown RBP7.21□□□□□ -1.26
PTPN4-210ENST00000485247 TBC1D9Q6ZT07 1266 aa7.21□□□□□ -1.26
PTPN4-210ENST00000485247 RBM17Q96I25 401 aaKnown RBP7.21□□□□□ -1.26
PTPN4-210ENST00000485247 NUCKS1Q9H1E3 243 aaKnown RBP7.21□□□□□ -1.26
PTPN4-210ENST00000485247 TMX4Q9H1E5 349 aaPredicted RBP7.21□□□□□ -1.26
PTPN4-210ENST00000485247 VPS33BQ9H267 617 aa7.21□□□□□ -1.26
PTPN4-210ENST00000485247 SERTAD1Q9UHV2 236 aa7.21□□□□□ -1.26
PTPN4-210ENST00000485247 MKI67P46013 3256 aaKnown RBP7.2□□□□□ -1.26
PTPN4-210ENST00000485247 PRAMEF22A3QJZ6 481 aa7.2□□□□□ -1.26
PTPN4-210ENST00000485247 YDJCA8MPS7 323 aa7.2□□□□□ -1.26
PTPN4-210ENST00000485247 KCNQ3O43525 872 aa7.2□□□□□ -1.26
PTPN4-210ENST00000485247 MSX1P28360 303 aa7.2□□□□□ -1.26
PTPN4-210ENST00000485247 SMTNP53814 917 aa7.2□□□□□ -1.26
PTPN4-210ENST00000485247 GTF2IP78347 998 aa7.2□□□□□ -1.26
PTPN4-210ENST00000485247 SRSF11Q05519 484 aaKnown RBP7.2□□□□□ -1.26
PTPN4-210ENST00000485247 UBAP2LQ14157 1087 aaKnown RBP7.2□□□□□ -1.26
PTPN4-210ENST00000485247 SUPT20HQ8NEM7 779 aa7.2□□□□□ -1.26
PTPN4-210ENST00000485247 CDCA5Q96FF9 252 aa7.2□□□□□ -1.26
PTPN4-210ENST00000485247 POLR3GLQ9BT43 218 aa7.2□□□□□ -1.26
PTPN4-210ENST00000485247 R3HDMLQ9H3Y0 253 aa7.2□□□□□ -1.26
PTPN4-210ENST00000485247 IQSEC3Q9UPP2 1182 aaPredicted RBP7.2□□□□□ -1.26
PTPN4-210ENST00000485247 TRIM17Q9Y577 477 aa7.2□□□□□ -1.26
PTPN4-210ENST00000485247 TRIOBPQ9H2D6 2365 aa7.19□□□□□ -1.26
PTPN4-210ENST00000485247 SZT2Q5T011 3432 aa7.19□□□□□ -1.26
PTPN4-210ENST00000485247 LZTS3O60299 673 aaPredicted RBP7.19□□□□□ -1.26
PTPN4-210ENST00000485247 PLA2G4AP47712 749 aa7.19□□□□□ -1.26
PTPN4-210ENST00000485247 KIAA2012Q0VF49 1180 aa7.19□□□□□ -1.26
PTPN4-210ENST00000485247 MTFR1Q15390 333 aa7.19□□□□□ -1.26
PTPN4-210ENST00000485247 NOM1Q5C9Z4 860 aaKnown RBP7.19□□□□□ -1.26
PTPN4-210ENST00000485247 LYPD4Q6UWN0 246 aa7.19□□□□□ -1.26
PTPN4-210ENST00000485247 DPP8Q6V1X1 898 aaPredicted RBP7.19□□□□□ -1.26
PTPN4-210ENST00000485247 MOB2Q70IA6 237 aa7.19□□□□□ -1.26
PTPN4-210ENST00000485247 IL17REQ8NFR9 667 aa7.19□□□□□ -1.26
PTPN4-210ENST00000485247 CRAMP1Q96RY5 1269 aa7.19□□□□□ -1.26
PTPN4-210ENST00000485247 NYXQ9GZU5 481 aa7.19□□□□□ -1.26
PTPN4-210ENST00000485247 RUBCNLQ9H714 662 aa7.19□□□□□ -1.26
PTPN4-210ENST00000485247 MBIPQ9NS73 344 aa7.19□□□□□ -1.26
PTPN4-210ENST00000485247 KIAA1024Q9UPX6 916 aa7.19□□□□□ -1.26
PTPN4-210ENST00000485247 NOD1Q9Y239 953 aa7.19□□□□□ -1.26
PTPN4-210ENST00000485247 ATP6V0A2Q9Y487 856 aa7.19□□□□□ -1.26
PTPN4-210ENST00000485247 KIF7Q2M1P5 1343 aa7.19□□□□□ -1.26
PTPN4-210ENST00000485247 POLR2AP24928 1970 aaKnown RBP7.19□□□□□ -1.26
PTPN4-210ENST00000485247 PAPPA2Q9BXP8 1791 aa7.18□□□□□ -1.26
PTPN4-210ENST00000485247 USP17L3A6NCW0 530 aa7.18□□□□□ -1.26
PTPN4-210ENST00000485247 USP17L4A6NCW7 530 aa7.18□□□□□ -1.26
PTPN4-210ENST00000485247 PSMD14O00487 310 aa7.18□□□□□ -1.26
PTPN4-210ENST00000485247 ARHGEF15O94989 841 aa7.18□□□□□ -1.26
PTPN4-210ENST00000485247 ATP4AP20648 1035 aa7.18□□□□□ -1.26
PTPN4-210ENST00000485247 TM4SF4P48230 202 aa7.18□□□□□ -1.26
PTPN4-210ENST00000485247 USP17L2Q6R6M4 530 aa7.18□□□□□ -1.26
PTPN4-210ENST00000485247 OTOP1Q7RTM1 612 aa7.18□□□□□ -1.26
PTPN4-210ENST00000485247 USP17L1Q7RTZ2 530 aa7.18□□□□□ -1.26
PTPN4-210ENST00000485247 MORC1Q86VD1 984 aa7.18□□□□□ -1.26
PTPN4-210ENST00000485247 PLEKHM2Q8IWE5 1019 aa7.18□□□□□ -1.26
PTPN4-210ENST00000485247 SVOPQ8N4V2 548 aa7.18□□□□□ -1.26
PTPN4-210ENST00000485247 RTFDC1Q9BY42 306 aaPredicted RBP7.18□□□□□ -1.26
PTPN4-210ENST00000485247 ZNF358Q9NW07 568 aa7.18□□□□□ -1.26
PTPN4-210ENST00000485247 GGA3Q9NZ52 723 aa7.18□□□□□ -1.26
PTPN4-210ENST00000485247 ASTN2O75129 1339 aaPredicted RBP7.18□□□□□ -1.26
PTPN4-210ENST00000485247 A6NJY4 79 aa7.17□□□□□ -1.26
PTPN4-210ENST00000485247 BTBD11A6QL63 1104 aa7.17□□□□□ -1.26
PTPN4-210ENST00000485247 UBE2Q2LH0YL09 131 aa7.17□□□□□ -1.26
PTPN4-210ENST00000485247 ATP9BO43861 1147 aa7.17□□□□□ -1.26
PTPN4-210ENST00000485247 GPTP24298 496 aa7.17□□□□□ -1.26
PTPN4-210ENST00000485247 CLDN10P78369 228 aa7.17□□□□□ -1.26
PTPN4-210ENST00000485247 KIF4BQ2VIQ3 1234 aa7.17□□□□□ -1.26
PTPN4-210ENST00000485247 FOXR1Q6PIV2 292 aa7.17□□□□□ -1.26
PTPN4-210ENST00000485247 NGEFQ8N5V2 710 aa7.17□□□□□ -1.26
PTPN4-210ENST00000485247 SERBP1Q8NC51 408 aaKnown RBP eCLIP7.17□□□□□ -1.26
PTPN4-210ENST00000485247 DPF2Q92785 391 aa7.17□□□□□ -1.26
PTPN4-210ENST00000485247 GLMNQ92990 594 aa7.17□□□□□ -1.26
PTPN4-210ENST00000485247 ADAMTS8Q9UP79 889 aa7.17□□□□□ -1.26
PTPN4-210ENST00000485247 PITPNM2Q9BZ72 1349 aa7.17□□□□□ -1.26
PTPN4-210ENST00000485247 KIAA0100Q14667 2235 aaKnown RBP7.17□□□□□ -1.26
PTPN4-210ENST00000485247 RIC1Q4ADV7 1423 aa7.17□□□□□ -1.26
PTPN4-210ENST00000485247 SNRPA1P09661 255 aaKnown RBP7.16□□□□□ -1.26
PTPN4-210ENST00000485247 GSK3AP49840 483 aa7.16□□□□□ -1.26
PTPN4-210ENST00000485247 EPHA4P54764 986 aa7.16□□□□□ -1.26
PTPN4-210ENST00000485247 FKBP1BP68106 108 aa7.16□□□□□ -1.26
PTPN4-210ENST00000485247 ANGEL2Q5VTE6 544 aaKnown RBP7.16□□□□□ -1.26
PTPN4-210ENST00000485247 SUSD4Q5VX71 490 aa7.16□□□□□ -1.26
PTPN4-210ENST00000485247 ARMC5Q96C12 935 aa7.16□□□□□ -1.26
PTPN4-210ENST00000485247 TRERF1Q96PN7 1200 aa7.16□□□□□ -1.26
PTPN4-210ENST00000485247 DBNDD1Q9H9R9 158 aa7.16□□□□□ -1.26
PTPN4-210ENST00000485247 SCAF8Q9UPN6 1271 aaKnown RBP7.16□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms