RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 STXBP5LQ9Y2K9 1186 aa21.34■■□□□ 1.01
VIM-204ENST00000478746 ADORA1P30542 326 aa21.33■■□□□ 1.01
VIM-204ENST00000478746 MAGEA10P43363 369 aaPredicted RBP21.33■■□□□ 1.01
VIM-204ENST00000478746 TRIM32Q13049 653 aa21.33■■□□□ 1.01
VIM-204ENST00000478746 TDHQ8IZJ6 230 aa21.33■■□□□ 1.01
VIM-204ENST00000478746 ZNF280CQ8ND82 737 aa21.33■■□□□ 1.01
VIM-204ENST00000478746 SSH1Q8WYL5 1049 aa21.33■■□□□ 1.01
VIM-204ENST00000478746 FAM196BA6NMK8 535 aa21.32■■□□□ 1
VIM-204ENST00000478746 UBTFL1P0CB47 393 aaPredicted RBP21.32■■□□□ 1
VIM-204ENST00000478746 HMGCS2P54868 508 aa21.32■■□□□ 1
VIM-204ENST00000478746 FAM9BQ8IZU0 186 aa21.32■■□□□ 1
VIM-204ENST00000478746 TBC1D2Q9BYX2 928 aa21.32■■□□□ 1
VIM-204ENST00000478746 UBE2OQ9C0C9 1292 aaKnown RBP21.32■■□□□ 1
VIM-204ENST00000478746 ASCC2Q9H1I8 757 aaPredicted RBP21.32■■□□□ 1
VIM-204ENST00000478746 MTMR10Q9NXD2 777 aa21.32■■□□□ 1
VIM-204ENST00000478746 OGDHLQ9ULD0 1010 aa21.32■■□□□ 1
VIM-204ENST00000478746 MROH7-TTC4A0A0A0MT08 1334 aa21.31■■□□□ 1
VIM-204ENST00000478746 GPR75-ASB3A0A0A6YYF3 556 aa21.31■■□□□ 1
VIM-204ENST00000478746 ANP32CO43423 234 aa21.31■■□□□ 1
VIM-204ENST00000478746 TIMM10P62072 90 aa21.31■■□□□ 1
VIM-204ENST00000478746 RASGRF1Q13972 1273 aa21.31■■□□□ 1
VIM-204ENST00000478746 ERICH6Q7L0X2 663 aa21.31■■□□□ 1
VIM-204ENST00000478746 NPM3O75607 178 aaKnown RBP21.3■■□□□ 1
VIM-204ENST00000478746 CYP2B6P20813 491 aa21.3■■□□□ 1
VIM-204ENST00000478746 RHBDL3P58872 404 aa21.3■■□□□ 1
VIM-204ENST00000478746 PA2G4Q9UQ80 394 aaKnown RBP21.3■■□□□ 1
VIM-204ENST00000478746 PDS5AQ29RF7 1337 aaKnown RBP21.29■■□□□ 1
VIM-204ENST00000478746 USP17L5A8MUK1 530 aa21.29■■□□□ 1
VIM-204ENST00000478746 CAP2P40123 477 aa21.29■■□□□ 1
VIM-204ENST00000478746 MECOMQ03112 1051 aa21.29■■□□□ 1
VIM-204ENST00000478746 TRIB2Q92519 343 aa21.29■■□□□ 1
VIM-204ENST00000478746 SH3D19Q5HYK7 790 aa21.28■■□□□ 1
VIM-204ENST00000478746 MORF4L1Q9UBU8 362 aa21.28■■□□□ 1
VIM-204ENST00000478746 HDAC5Q9UQL6 1122 aa21.28■■□□□ 1
VIM-204ENST00000478746 ZNF521Q96K83 1311 aa21.28■■□□□ 1
VIM-204ENST00000478746 DDX60LQ5H9U9 1706 aaKnown RBP21.27■■□□□ 1
VIM-204ENST00000478746 MAP4K4O95819 1239 aaPredicted RBP21.27■■□□□ 1
VIM-204ENST00000478746 LDHCP07864 332 aa21.27■■□□□ 1
VIM-204ENST00000478746 PRKAR2AP13861 404 aaKnown RBP21.27■■□□□ 1
VIM-204ENST00000478746 NUDT12Q9BQG2 462 aa21.27■■□□□ 1
VIM-204ENST00000478746 AS3MTQ9HBK9 375 aa21.27■■□□□ 1
VIM-204ENST00000478746 COPRSQ9NQ92 184 aa21.27■■□□□ 1
VIM-204ENST00000478746 IRX3P78415 501 aaPredicted RBP21.26■□□□□ 0.99
VIM-204ENST00000478746 GSTO1P78417 241 aa21.26■□□□□ 0.99
VIM-204ENST00000478746 RRP1BQ14684 758 aaKnown RBP21.26■□□□□ 0.99
VIM-204ENST00000478746 MAP3K21Q5TCX8 1036 aa21.26■□□□□ 0.99
VIM-204ENST00000478746 XAGE2Q96GT9 111 aa21.26■□□□□ 0.99
VIM-204ENST00000478746 PFASO15067 1338 aa21.26■□□□□ 0.99
VIM-204ENST00000478746 XRCC5P13010 732 aaKnown RBP21.25■□□□□ 0.99
VIM-204ENST00000478746 TRMT44Q8IYL2 757 aaKnown RBP21.25■□□□□ 0.99
VIM-204ENST00000478746 GPRC5AQ8NFJ5 357 aa21.25■□□□□ 0.99
VIM-204ENST00000478746 ZNF384Q8TF68 577 aa21.25■□□□□ 0.99
VIM-204ENST00000478746 P2RX7Q99572 595 aaKnown RBP21.25■□□□□ 0.99
VIM-204ENST00000478746 AKAP2Q9Y2D5 859 aa21.25■□□□□ 0.99
VIM-204ENST00000478746 LOC285556D6RIA3 1793 aa21.25■□□□□ 0.99
VIM-204ENST00000478746 A0A1B0GUL7 405 aa21.24■□□□□ 0.99
VIM-204ENST00000478746 MVPQ14764 893 aaKnown RBP21.24■□□□□ 0.99
VIM-204ENST00000478746 ALDH1L2Q3SY69 923 aa21.24■□□□□ 0.99
VIM-204ENST00000478746 SOCS4Q8WXH5 440 aa21.24■□□□□ 0.99
VIM-204ENST00000478746 WDR18Q9BV38 432 aa21.24■□□□□ 0.99
VIM-204ENST00000478746 TMOD4Q9NZQ9 345 aa21.24■□□□□ 0.99
VIM-204ENST00000478746 HERC5Q9UII4 1024 aaKnown RBP21.24■□□□□ 0.99
VIM-204ENST00000478746 PLXNB2O15031 1838 aa21.24■□□□□ 0.99
VIM-204ENST00000478746 E9PSI1 815 aa21.23■□□□□ 0.99
VIM-204ENST00000478746 HOXA7P31268 230 aaPredicted RBP21.23■□□□□ 0.99
VIM-204ENST00000478746 CACNB2Q08289 660 aaPredicted RBP21.23■□□□□ 0.99
VIM-204ENST00000478746 MTMR2Q13614 643 aa21.23■□□□□ 0.99
VIM-204ENST00000478746 NSUN4Q96CB9 384 aaKnown RBP21.23■□□□□ 0.99
VIM-204ENST00000478746 PEX10O60683 326 aa21.22■□□□□ 0.99
VIM-204ENST00000478746 COL6A1P12109 1028 aa21.22■□□□□ 0.99
VIM-204ENST00000478746 ZKSCAN1P17029 563 aaPredicted RBP21.22■□□□□ 0.99
VIM-204ENST00000478746 BACE1P56817 501 aa21.22■□□□□ 0.99
VIM-204ENST00000478746 MDM2Q00987 491 aaPredicted RBP21.22■□□□□ 0.99
VIM-204ENST00000478746 TFCP2Q12800 502 aa21.22■□□□□ 0.99
VIM-204ENST00000478746 PDE3AQ14432 1141 aa21.22■□□□□ 0.99
VIM-204ENST00000478746 TBC1D9Q6ZT07 1266 aa21.22■□□□□ 0.99
VIM-204ENST00000478746 CCAR1Q8IX12 1150 aaKnown RBP21.22■□□□□ 0.99
VIM-204ENST00000478746 TEX11Q8IYF3 940 aa21.22■□□□□ 0.99
VIM-204ENST00000478746 NEUROD6Q96NK8 337 aa21.22■□□□□ 0.99
VIM-204ENST00000478746 SMC4Q9NTJ3 1288 aa21.22■□□□□ 0.99
VIM-204ENST00000478746 RAI14Q9P0K7 980 aa21.22■□□□□ 0.99
VIM-204ENST00000478746 HMG20BQ9P0W2 317 aa21.22■□□□□ 0.99
VIM-204ENST00000478746 PI4KBQ9UBF8 816 aa21.22■□□□□ 0.99
VIM-204ENST00000478746 ATAD5Q96QE3 1844 aa21.22■□□□□ 0.99
VIM-204ENST00000478746 UNC80Q8N2C7 3258 aa21.21■□□□□ 0.99
VIM-204ENST00000478746 COL2A1P02458 1487 aaPredicted RBP21.21■□□□□ 0.99
VIM-204ENST00000478746 MAPK4P31152 587 aa21.21■□□□□ 0.99
VIM-204ENST00000478746 HERVK_113P62684 666 aa21.21■□□□□ 0.99
VIM-204ENST00000478746 LRRC26Q2I0M4 334 aa21.21■□□□□ 0.99
VIM-204ENST00000478746 LHX8Q68G74 356 aa21.21■□□□□ 0.99
VIM-204ENST00000478746 COL25A1Q9BXS0 654 aaPredicted RBP21.21■□□□□ 0.99
VIM-204ENST00000478746 TXNRD2Q9NNW7 524 aa21.21■□□□□ 0.99
VIM-204ENST00000478746 RBPJLQ9UBG7 517 aa21.21■□□□□ 0.99
VIM-204ENST00000478746 C19orf81C9J6K1 198 aa21.2■□□□□ 0.98
VIM-204ENST00000478746 ASNSP08243 561 aa21.2■□□□□ 0.98
VIM-204ENST00000478746 Q3C1V9 767 aa21.2■□□□□ 0.98
VIM-204ENST00000478746 GORABQ5T7V8 394 aa21.2■□□□□ 0.98
VIM-204ENST00000478746 SPATA5Q8NB90 893 aa21.2■□□□□ 0.98
VIM-204ENST00000478746 CCND3P30281 292 aaPredicted RBP21.19■□□□□ 0.98
VIM-204ENST00000478746 RGS2P41220 211 aa21.19■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 74 ms