RNA–Protein interactions for RNA: ENST00000470531.5

CHD3-208, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 3,744 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-208ENST00000470531 ERLIN1O75477 346 aa12.15□□□□□ -0.46
CHD3-208ENST00000470531 CDC27P30260 824 aa12.15□□□□□ -0.46
CHD3-208ENST00000470531 SMC1AQ14683 1233 aaKnown RBP12.15□□□□□ -0.46
CHD3-208ENST00000470531 SPTY2D1Q68D10 685 aaPredicted RBP12.15□□□□□ -0.46
CHD3-208ENST00000470531 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.15□□□□□ -0.46
CHD3-208ENST00000470531 IQCA1Q86XH1 822 aa12.15□□□□□ -0.46
CHD3-208ENST00000470531 ACRBPQ8NEB7 543 aa12.15□□□□□ -0.46
CHD3-208ENST00000470531 LLPHQ9BRT6 129 aaKnown RBP12.15□□□□□ -0.46
CHD3-208ENST00000470531 TFR2Q9UP52 801 aa12.15□□□□□ -0.46
CHD3-208ENST00000470531 ERBB3P21860 1342 aa12.15□□□□□ -0.46
CHD3-208ENST00000470531 ZNF609O15014 1411 aa12.15□□□□□ -0.46
CHD3-208ENST00000470531 SLC5A1P13866 664 aa12.15□□□□□ -0.46
CHD3-208ENST00000470531 KIF23Q02241 960 aaPredicted RBP12.15□□□□□ -0.46
CHD3-208ENST00000470531 CYB5R4Q7L1T6 521 aa12.15□□□□□ -0.46
CHD3-208ENST00000470531 BRAPQ7Z569 592 aa12.15□□□□□ -0.46
CHD3-208ENST00000470531 CATIPQ7Z7H3 387 aa12.15□□□□□ -0.46
CHD3-208ENST00000470531 CDK5RAP3Q96JB5 506 aa12.15□□□□□ -0.46
CHD3-208ENST00000470531 PRR29P0C7W0 189 aa12.15□□□□□ -0.46
CHD3-208ENST00000470531 UBA7P41226 1012 aa12.15□□□□□ -0.46
CHD3-208ENST00000470531 EIF6P56537 245 aaKnown RBP12.15□□□□□ -0.46
CHD3-208ENST00000470531 SYCP1Q15431 976 aa12.15□□□□□ -0.46
CHD3-208ENST00000470531 HEATR3Q7Z4Q2 680 aa12.15□□□□□ -0.46
CHD3-208ENST00000470531 WDR24Q96S15 920 aa12.15□□□□□ -0.46
CHD3-208ENST00000470531 SUGCTQ9HAC7 445 aa12.15□□□□□ -0.46
CHD3-208ENST00000470531 FDPSP14324 419 aaKnown RBP12.14□□□□□ -0.47
CHD3-208ENST00000470531 GYG1P46976 350 aa12.14□□□□□ -0.47
CHD3-208ENST00000470531 ST5P78524 1137 aa12.14□□□□□ -0.47
CHD3-208ENST00000470531 CCDC70Q6NSX1 233 aa12.14□□□□□ -0.47
CHD3-208ENST00000470531 APOA5Q6Q788 366 aa12.14□□□□□ -0.47
CHD3-208ENST00000470531 FMR1NBQ8N0W7 255 aaPredicted RBP12.14□□□□□ -0.47
CHD3-208ENST00000470531 OXER1Q8TDS5 423 aa12.14□□□□□ -0.47
CHD3-208ENST00000470531 IL17RAQ96F46 866 aa12.14□□□□□ -0.47
CHD3-208ENST00000470531 ZSWIM5Q9P217 1185 aa12.14□□□□□ -0.47
CHD3-208ENST00000470531 AKR1B15C9JRZ8 316 aaPredicted RBP12.14□□□□□ -0.47
CHD3-208ENST00000470531 F8W031 263 aaPredicted RBP12.14□□□□□ -0.47
CHD3-208ENST00000470531 PNMA6AP0CW24 399 aaPredicted RBP12.14□□□□□ -0.47
CHD3-208ENST00000470531 EPS15P42566 896 aa12.14□□□□□ -0.47
CHD3-208ENST00000470531 CHMP4BP1P59074 171 aa12.14□□□□□ -0.47
CHD3-208ENST00000470531 DZIP3Q86Y13 1208 aaKnown RBP12.14□□□□□ -0.47
CHD3-208ENST00000470531 TBC1D10CQ8IV04 446 aa12.14□□□□□ -0.47
CHD3-208ENST00000470531 DSCC1Q9BVC3 393 aa12.14□□□□□ -0.47
CHD3-208ENST00000470531 UBA5Q9GZZ9 404 aa12.14□□□□□ -0.47
CHD3-208ENST00000470531 NIP7Q9Y221 180 aaKnown RBP eCLIP12.14□□□□□ -0.47
CHD3-208ENST00000470531 PDE6AP16499 860 aa12.14□□□□□ -0.47
CHD3-208ENST00000470531 KRT9P35527 623 aa12.14□□□□□ -0.47
CHD3-208ENST00000470531 HLFQ16534 295 aa12.14□□□□□ -0.47
CHD3-208ENST00000470531 GOLGA1Q92805 767 aa12.14□□□□□ -0.47
CHD3-208ENST00000470531 PLCD4Q9BRC7 762 aa12.14□□□□□ -0.47
CHD3-208ENST00000470531 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP12.14□□□□□ -0.475e-28■□□□□ 10.7
CHD3-208ENST00000470531 MMRN2Q9H8L6 949 aa12.14□□□□□ -0.47
CHD3-208ENST00000470531 CCDC194A0A1B0GVG4 234 aa12.13□□□□□ -0.47
CHD3-208ENST00000470531 NBPF26B4DH59 902 aa12.13□□□□□ -0.47
CHD3-208ENST00000470531 TEX33O43247 280 aa12.13□□□□□ -0.47
CHD3-208ENST00000470531 CASP14P31944 242 aa12.13□□□□□ -0.47
CHD3-208ENST00000470531 NBPF14Q5TI25 921 aa12.13□□□□□ -0.47
CHD3-208ENST00000470531 NBPF10Q6P3W6 841 aaKnown RBP12.13□□□□□ -0.47
CHD3-208ENST00000470531 NBPF15Q8N660 670 aa12.13□□□□□ -0.47
CHD3-208ENST00000470531 WASF1Q92558 559 aa12.13□□□□□ -0.47
CHD3-208ENST00000470531 PDE11AQ9HCR9 933 aa12.13□□□□□ -0.47
CHD3-208ENST00000470531 RTEL1Q9NZ71 1219 aa12.13□□□□□ -0.47
CHD3-208ENST00000470531 CWC15Q9P013 229 aaKnown RBP12.13□□□□□ -0.47
CHD3-208ENST00000470531 KRT18P05783 430 aaKnown RBP12.13□□□□□ -0.47
CHD3-208ENST00000470531 CCDC96Q2M329 555 aa12.13□□□□□ -0.47
CHD3-208ENST00000470531 ZNF274Q96GC6 653 aaPredicted RBP12.13□□□□□ -0.47
CHD3-208ENST00000470531 CSRNP2Q9H175 543 aa12.13□□□□□ -0.47
CHD3-208ENST00000470531 CPVLQ9H3G5 476 aa12.13□□□□□ -0.47
CHD3-208ENST00000470531 PIH1D3Q9NQM4 214 aaKnown RBP12.13□□□□□ -0.47
CHD3-208ENST00000470531 CTAGE15A4D2H0 777 aa12.13□□□□□ -0.47
CHD3-208ENST00000470531 CTAGE9A4FU28 777 aa12.13□□□□□ -0.47
CHD3-208ENST00000470531 ZEB2O60315 1214 aa12.13□□□□□ -0.47
CHD3-208ENST00000470531 EIF3JO75822 258 aaKnown RBP12.13□□□□□ -0.47
CHD3-208ENST00000470531 ZFYP08048 801 aaPredicted RBP12.13□□□□□ -0.47
CHD3-208ENST00000470531 CTAGE8P0CG41 777 aa12.13□□□□□ -0.47
CHD3-208ENST00000470531 MCAMP43121 646 aa12.13□□□□□ -0.47
CHD3-208ENST00000470531 NBPF11Q86T75 865 aa12.13□□□□□ -0.47
CHD3-208ENST00000470531 CTAGE6Q86UF2 777 aa12.13□□□□□ -0.47
CHD3-208ENST00000470531 CTAGE4Q8IX94 777 aa12.13□□□□□ -0.47
CHD3-208ENST00000470531 GPKOWQ92917 476 aaPredicted RBP eCLIP12.13□□□□□ -0.47
CHD3-208ENST00000470531 SMARCC1Q92922 1105 aaPredicted RBP12.13□□□□□ -0.47
CHD3-208ENST00000470531 SEPT11Q9NVA2 429 aaKnown RBP12.13□□□□□ -0.47
CHD3-208ENST00000470531 FHOD1Q9Y613 1164 aa12.13□□□□□ -0.47
CHD3-208ENST00000470531 STAT6P42226 847 aa12.12□□□□□ -0.47
CHD3-208ENST00000470531 SPECC1LQ69YQ0 1117 aa12.12□□□□□ -0.47
CHD3-208ENST00000470531 CTR9Q6PD62 1173 aa12.12□□□□□ -0.47
CHD3-208ENST00000470531 AATFQ9NY61 560 aaKnown RBP eCLIP12.12□□□□□ -0.476e-17■■■□□ 16
CHD3-208ENST00000470531 ZNF219Q9P2Y4 722 aaPredicted RBP12.12□□□□□ -0.47
CHD3-208ENST00000470531 TMEM131LA2VDJ0 1609 aa12.12□□□□□ -0.47
CHD3-208ENST00000470531 CCDC196A0A1B0GTZ2 297 aa12.12□□□□□ -0.47
CHD3-208ENST00000470531 CMA1P23946 247 aa12.12□□□□□ -0.47
CHD3-208ENST00000470531 PLA2G4AP47712 749 aa12.12□□□□□ -0.47
CHD3-208ENST00000470531 RBM43Q6ZSC3 357 aaKnown RBP12.12□□□□□ -0.47
CHD3-208ENST00000470531 CCDC47Q96A33 483 aaKnown RBP12.12□□□□□ -0.47
CHD3-208ENST00000470531 SAP30BPQ9UHR5 308 aaKnown RBP12.12□□□□□ -0.47
CHD3-208ENST00000470531 GOLGA8HP0CJ92 632 aa12.12□□□□□ -0.47
CHD3-208ENST00000470531 PDE4BQ07343 736 aa12.12□□□□□ -0.47
CHD3-208ENST00000470531 CCDC122Q5T0U0 273 aa12.12□□□□□ -0.47
CHD3-208ENST00000470531 GSPT2Q8IYD1 628 aaKnown RBP12.12□□□□□ -0.47
CHD3-208ENST00000470531 CEP131Q9UPN4 1083 aa12.12□□□□□ -0.47
CHD3-208ENST00000470531 ZBTB12Q9Y330 459 aaPredicted RBP12.12□□□□□ -0.47
CHD3-208ENST00000470531 CLTCQ00610 1675 aaKnown RBP12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 127.4 ms