RNA–Protein interactions for RNA: ENST00000469897.1

CPSF4-210, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 689 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-210ENST00000469897 GABRQQ9UN88 632 aa16.28■□□□□ 0.2
CPSF4-210ENST00000469897 SLC45A1Q9Y2W3 748 aa16.28■□□□□ 0.2
CPSF4-210ENST00000469897 MYPNQ86TC9 1320 aa16.27■□□□□ 0.2
CPSF4-210ENST00000469897 CAP2P40123 477 aa16.27■□□□□ 0.2
CPSF4-210ENST00000469897 PRKCZQ05513 592 aa16.27■□□□□ 0.2
CPSF4-210ENST00000469897 TREML2Q5T2D2 321 aa16.27■□□□□ 0.2
CPSF4-210ENST00000469897 MAPKAPK5Q8IW41 473 aa16.27■□□□□ 0.2
CPSF4-210ENST00000469897 PANK1Q8TE04 598 aa16.27■□□□□ 0.2
CPSF4-210ENST00000469897 PI4KBQ9UBF8 816 aa16.27■□□□□ 0.2
CPSF4-210ENST00000469897 DBNLQ9UJU6 430 aaKnown RBP16.27■□□□□ 0.2
CPSF4-210ENST00000469897 AGTPBP1Q9UPW5 1226 aa16.27■□□□□ 0.2
CPSF4-210ENST00000469897 LAMB1P07942 1786 aa16.26■□□□□ 0.19
CPSF4-210ENST00000469897 DYNLL1P63167 89 aaKnown RBP16.26■□□□□ 0.19
CPSF4-210ENST00000469897 ZNF280CQ8ND82 737 aa16.26■□□□□ 0.19
CPSF4-210ENST00000469897 SMCR8Q8TEV9 937 aaPredicted RBP16.26■□□□□ 0.19
CPSF4-210ENST00000469897 DHX36Q9H2U1 1008 aaKnown RBP16.26■□□□□ 0.19
CPSF4-210ENST00000469897 USP17L5A8MUK1 530 aa16.25■□□□□ 0.19
CPSF4-210ENST00000469897 PLCG2P16885 1265 aa16.25■□□□□ 0.19
CPSF4-210ENST00000469897 JAG1P78504 1218 aa16.25■□□□□ 0.19
CPSF4-210ENST00000469897 CEP85Q6P2H3 762 aa16.25■□□□□ 0.19
CPSF4-210ENST00000469897 FOXP4Q8IVH2 680 aaPredicted RBP16.25■□□□□ 0.19
CPSF4-210ENST00000469897 ANKRD13CQ8N6S4 541 aa16.25■□□□□ 0.19
CPSF4-210ENST00000469897 HERC5Q9UII4 1024 aaKnown RBP16.25■□□□□ 0.19
CPSF4-210ENST00000469897 PALD1Q9ULE6 856 aa16.25■□□□□ 0.19
CPSF4-210ENST00000469897 NDUFB9Q9Y6M9 179 aa16.25■□□□□ 0.19
CPSF4-210ENST00000469897 HTTP42858 3142 aa16.25■□□□□ 0.19
CPSF4-210ENST00000469897 TNPO2O14787 897 aaKnown RBP16.24■□□□□ 0.19
CPSF4-210ENST00000469897 CCL5P13501 91 aa16.24■□□□□ 0.19
CPSF4-210ENST00000469897 CYP7A1P22680 504 aa16.24■□□□□ 0.19
CPSF4-210ENST00000469897 FLT3LGP49771 235 aa16.24■□□□□ 0.19
CPSF4-210ENST00000469897 HMGCS2P54868 508 aa16.24■□□□□ 0.19
CPSF4-210ENST00000469897 SAP30BPQ9UHR5 308 aaKnown RBP16.24■□□□□ 0.19
CPSF4-210ENST00000469897 EXOC6BQ9Y2D4 811 aa16.24■□□□□ 0.19
CPSF4-210ENST00000469897 ADCY3O60266 1144 aa16.23■□□□□ 0.19
CPSF4-210ENST00000469897 IDH1O75874 414 aaKnown RBP16.23■□□□□ 0.19
CPSF4-210ENST00000469897 PROCA1Q8NCQ7 364 aaPredicted RBP16.23■□□□□ 0.19
CPSF4-210ENST00000469897 GCC1Q96CN9 775 aa16.23■□□□□ 0.19
CPSF4-210ENST00000469897 RNF208Q9H0X6 261 aa16.23■□□□□ 0.19
CPSF4-210ENST00000469897 ANTXR1Q9H6X2 564 aa16.23■□□□□ 0.19
CPSF4-210ENST00000469897 AS3MTQ9HBK9 375 aa16.23■□□□□ 0.19
CPSF4-210ENST00000469897 FLT1P17948 1338 aa16.22■□□□□ 0.19
CPSF4-210ENST00000469897 UBXN2AP68543 259 aa16.22■□□□□ 0.19
CPSF4-210ENST00000469897 SHROOM1Q2M3G4 852 aaPredicted RBP16.22■□□□□ 0.19
CPSF4-210ENST00000469897 SH3D19Q5HYK7 790 aa16.22■□□□□ 0.19
CPSF4-210ENST00000469897 AACSQ86V21 672 aa16.22■□□□□ 0.19
CPSF4-210ENST00000469897 CRACR2BQ8N4Y2 399 aaPredicted RBP16.22■□□□□ 0.19
CPSF4-210ENST00000469897 MIGA1Q8NAN2 632 aa16.22■□□□□ 0.19
CPSF4-210ENST00000469897 TRIM34Q9BYJ4 488 aa16.22■□□□□ 0.19
CPSF4-210ENST00000469897 TBC1D2Q9BYX2 928 aa16.22■□□□□ 0.19
CPSF4-210ENST00000469897 DNAJC18Q9H819 358 aa16.22■□□□□ 0.19
CPSF4-210ENST00000469897 IL1RAPL2Q9NP60 686 aa16.22■□□□□ 0.19
CPSF4-210ENST00000469897 PNMA3Q9UL41 463 aa16.22■□□□□ 0.19
CPSF4-210ENST00000469897 ZBED9Q6R2W3 1325 aa16.21■□□□□ 0.19
CPSF4-210ENST00000469897 IGSF3O75054 1194 aa16.21■□□□□ 0.19
CPSF4-210ENST00000469897 GDF11O95390 407 aa16.21■□□□□ 0.19
CPSF4-210ENST00000469897 GJB1P08034 283 aa16.21■□□□□ 0.19
CPSF4-210ENST00000469897 ELNP15502 786 aa16.21■□□□□ 0.19
CPSF4-210ENST00000469897 GJA8P48165 433 aa16.21■□□□□ 0.19
CPSF4-210ENST00000469897 HABP4Q5JVS0 413 aaKnown RBP16.21■□□□□ 0.19
CPSF4-210ENST00000469897 METTL16Q86W50 562 aaKnown RBP16.21■□□□□ 0.19
CPSF4-210ENST00000469897 ERC1Q8IUD2 1116 aa16.21■□□□□ 0.19
CPSF4-210ENST00000469897 MAGEB6Q8N7X4 407 aa16.21■□□□□ 0.19
CPSF4-210ENST00000469897 SLAIN1Q8ND83 568 aa16.21■□□□□ 0.19
CPSF4-210ENST00000469897 NKX2-3Q8TAU0 364 aa16.21■□□□□ 0.19
CPSF4-210ENST00000469897 SHISA4Q96DD7 197 aa16.21■□□□□ 0.19
CPSF4-210ENST00000469897 WDR18Q9BV38 432 aa16.21■□□□□ 0.19
CPSF4-210ENST00000469897 UNC93B1Q9H1C4 597 aa16.21■□□□□ 0.19
CPSF4-210ENST00000469897 ASCC2Q9H1I8 757 aaPredicted RBP16.21■□□□□ 0.19
CPSF4-210ENST00000469897 TAOK2Q9UL54 1235 aa16.21■□□□□ 0.19
CPSF4-210ENST00000469897 ASNSP08243 561 aa16.2■□□□□ 0.18
CPSF4-210ENST00000469897 BACE1P56817 501 aa16.2■□□□□ 0.18
CPSF4-210ENST00000469897 PABPC4Q13310 644 aaKnown RBP eCLIP16.2■□□□□ 0.18
CPSF4-210ENST00000469897 MTMR2Q13614 643 aa16.2■□□□□ 0.18
CPSF4-210ENST00000469897 RHPN1Q8TCX5 695 aa16.2■□□□□ 0.18
CPSF4-210ENST00000469897 COA7Q96BR5 231 aa16.2■□□□□ 0.18
CPSF4-210ENST00000469897 BCL11AQ9H165 835 aa16.2■□□□□ 0.18
CPSF4-210ENST00000469897 COL2A1P02458 1487 aaPredicted RBP16.2■□□□□ 0.18
CPSF4-210ENST00000469897 APBB1O00213 710 aa16.19■□□□□ 0.18
CPSF4-210ENST00000469897 HLA-DOAP06340 250 aa16.19■□□□□ 0.18
CPSF4-210ENST00000469897 USP5P45974 858 aa16.19■□□□□ 0.18
CPSF4-210ENST00000469897 GCLCP48506 637 aaPredicted RBP16.19■□□□□ 0.18
CPSF4-210ENST00000469897 IRF5Q13568 498 aa16.19■□□□□ 0.18
CPSF4-210ENST00000469897 PXYLP1Q8TE99 480 aa16.19■□□□□ 0.18
CPSF4-210ENST00000469897 DPF3Q92784 378 aa16.19■□□□□ 0.18
CPSF4-210ENST00000469897 P2RX7Q99572 595 aaKnown RBP16.19■□□□□ 0.18
CPSF4-210ENST00000469897 TMOD4Q9NZQ9 345 aa16.19■□□□□ 0.18
CPSF4-210ENST00000469897 COG6Q9Y2V7 657 aa16.19■□□□□ 0.18
CPSF4-210ENST00000469897 MYH2Q9UKX2 1941 aa16.19■□□□□ 0.18
CPSF4-210ENST00000469897 MYH13Q9UKX3 1938 aa16.18■□□□□ 0.18
CPSF4-210ENST00000469897 ZSWIM8A7E2V4 1837 aa16.18■□□□□ 0.18
CPSF4-210ENST00000469897 C19orf81C9J6K1 198 aa16.18■□□□□ 0.18
CPSF4-210ENST00000469897 H0YGN5 161 aa16.18■□□□□ 0.18
CPSF4-210ENST00000469897 PEX10O60683 326 aa16.18■□□□□ 0.18
CPSF4-210ENST00000469897 SGPL1O95470 568 aa16.18■□□□□ 0.18
CPSF4-210ENST00000469897 INHAP05111 366 aa16.18■□□□□ 0.18
CPSF4-210ENST00000469897 MS4A1P11836 297 aa16.18■□□□□ 0.18
CPSF4-210ENST00000469897 MAP3K12Q12852 859 aa16.18■□□□□ 0.18
CPSF4-210ENST00000469897 FAM110CQ1W6H9 321 aa16.18■□□□□ 0.18
CPSF4-210ENST00000469897 HSP90AB4PQ58FF6 505 aa16.18■□□□□ 0.18
CPSF4-210ENST00000469897 U2AF1L4Q8WU68 220 aaKnown RBP16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms