RNA–Protein interactions for RNA: ENST00000463988.1

SNRNP40-203, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 2

Gene SNRNP40, Length 677 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-203ENST00000463988 TMED8Q6PL24 325 aaPredicted RBP17.57■□□□□ 0.4
SNRNP40-203ENST00000463988 AATFQ9NY61 560 aaKnown RBP eCLIP17.57■□□□□ 0.4
SNRNP40-203ENST00000463988 MAST2Q6P0Q8 1798 aa17.57■□□□□ 0.4
SNRNP40-203ENST00000463988 PHIPQ8WWQ0 1821 aa17.56■□□□□ 0.4
SNRNP40-203ENST00000463988 CTGFP29279 349 aa17.56■□□□□ 0.4
SNRNP40-203ENST00000463988 CAP2P40123 477 aa17.56■□□□□ 0.4
SNRNP40-203ENST00000463988 GADL1Q6ZQY3 521 aa17.56■□□□□ 0.4
SNRNP40-203ENST00000463988 METTL16Q86W50 562 aaKnown RBP17.56■□□□□ 0.4
SNRNP40-203ENST00000463988 CCDC8Q9H0W5 538 aaPredicted RBP17.56■□□□□ 0.4
SNRNP40-203ENST00000463988 PIH1D3Q9NQM4 214 aaKnown RBP17.56■□□□□ 0.4
SNRNP40-203ENST00000463988 TLR7Q9NYK1 1049 aaKnown RBP17.56■□□□□ 0.4
SNRNP40-203ENST00000463988 PTPRFP10586 1907 aa17.55■□□□□ 0.4
SNRNP40-203ENST00000463988 FAM196BA6NMK8 535 aa17.55■□□□□ 0.4
SNRNP40-203ENST00000463988 SLC34A2O95436 690 aa17.55■□□□□ 0.4
SNRNP40-203ENST00000463988 FMNL1O95466 1100 aaPredicted RBP17.55■□□□□ 0.4
SNRNP40-203ENST00000463988 EN2P19622 333 aaPredicted RBP17.55■□□□□ 0.4
SNRNP40-203ENST00000463988 OSBPP22059 807 aa17.55■□□□□ 0.4
SNRNP40-203ENST00000463988 FCGRTP55899 365 aa17.55■□□□□ 0.4
SNRNP40-203ENST00000463988 ADGRA1Q86SQ6 560 aa17.55■□□□□ 0.4
SNRNP40-203ENST00000463988 CERS3Q8IU89 383 aa17.55■□□□□ 0.4
SNRNP40-203ENST00000463988 FOXP4Q8IVH2 680 aaPredicted RBP17.55■□□□□ 0.4
SNRNP40-203ENST00000463988 PROCA1Q8NCQ7 364 aaPredicted RBP17.55■□□□□ 0.4
SNRNP40-203ENST00000463988 AGTPBP1Q9UPW5 1226 aa17.55■□□□□ 0.4
SNRNP40-203ENST00000463988 ZSWIM8A7E2V4 1837 aa17.55■□□□□ 0.4
SNRNP40-203ENST00000463988 SLC4A8Q2Y0W8 1093 aa17.54■□□□□ 0.4
SNRNP40-203ENST00000463988 RPAP2Q8IXW5 612 aaPredicted RBP17.54■□□□□ 0.4
SNRNP40-203ENST00000463988 ZNF280CQ8ND82 737 aa17.54■□□□□ 0.4
SNRNP40-203ENST00000463988 SH3TC2Q8TF17 1288 aa17.54■□□□□ 0.4
SNRNP40-203ENST00000463988 TGFBRAP1Q8WUH2 860 aa17.54■□□□□ 0.4
SNRNP40-203ENST00000463988 EXOC6BQ9Y2D4 811 aa17.54■□□□□ 0.4
SNRNP40-203ENST00000463988 FLT1P17948 1338 aa17.53■□□□□ 0.4
SNRNP40-203ENST00000463988 USP17L5A8MUK1 530 aa17.53■□□□□ 0.4
SNRNP40-203ENST00000463988 CYP7A1P22680 504 aa17.53■□□□□ 0.4
SNRNP40-203ENST00000463988 SPP2Q13103 211 aa17.53■□□□□ 0.4
SNRNP40-203ENST00000463988 RRP1BQ14684 758 aaKnown RBP17.53■□□□□ 0.4
SNRNP40-203ENST00000463988 CCDC84Q86UT8 332 aaPredicted RBP17.53■□□□□ 0.4
SNRNP40-203ENST00000463988 AACSQ86V21 672 aa17.53■□□□□ 0.4
SNRNP40-203ENST00000463988 MAPKAPK5Q8IW41 473 aa17.53■□□□□ 0.4
SNRNP40-203ENST00000463988 RAET1EQ8TD07 263 aa17.53■□□□□ 0.4
SNRNP40-203ENST00000463988 SMCR8Q8TEV9 937 aaPredicted RBP17.53■□□□□ 0.4
SNRNP40-203ENST00000463988 GINM1Q9NU53 330 aa17.53■□□□□ 0.4
SNRNP40-203ENST00000463988 FRMD4AQ9P2Q2 1039 aaPredicted RBP17.53■□□□□ 0.4
SNRNP40-203ENST00000463988 PNMA3Q9UL41 463 aa17.53■□□□□ 0.4
SNRNP40-203ENST00000463988 DDX19BQ9UMR2 479 aa17.53■□□□□ 0.4
SNRNP40-203ENST00000463988 MYPNQ86TC9 1320 aa17.52■□□□□ 0.4
SNRNP40-203ENST00000463988 IDH1O75874 414 aaKnown RBP17.52■□□□□ 0.4
SNRNP40-203ENST00000463988 SH3D19Q5HYK7 790 aa17.52■□□□□ 0.4
SNRNP40-203ENST00000463988 RHPN1Q8TCX5 695 aa17.52■□□□□ 0.4
SNRNP40-203ENST00000463988 WDR18Q9BV38 432 aa17.52■□□□□ 0.4
SNRNP40-203ENST00000463988 CHMP4BQ9H444 224 aaKnown RBP17.52■□□□□ 0.4
SNRNP40-203ENST00000463988 AS3MTQ9HBK9 375 aa17.52■□□□□ 0.4
SNRNP40-203ENST00000463988 ZBTB40Q9NUA8 1239 aa17.52■□□□□ 0.4
SNRNP40-203ENST00000463988 HMMRO75330 724 aa17.51■□□□□ 0.39
SNRNP40-203ENST00000463988 ASNSP08243 561 aa17.51■□□□□ 0.39
SNRNP40-203ENST00000463988 GRK4P32298 578 aa17.51■□□□□ 0.39
SNRNP40-203ENST00000463988 MAP3K12Q12852 859 aa17.51■□□□□ 0.39
SNRNP40-203ENST00000463988 PABPC4Q13310 644 aaKnown RBP eCLIP17.51■□□□□ 0.39
SNRNP40-203ENST00000463988 TREML2Q5T2D2 321 aa17.51■□□□□ 0.39
SNRNP40-203ENST00000463988 MYO5AQ9Y4I1 1855 aaKnown RBP17.51■□□□□ 0.39
SNRNP40-203ENST00000463988 FOCADQ5VW36 1801 aa17.51■□□□□ 0.39
SNRNP40-203ENST00000463988 BRCA2P51587 3418 aa17.5■□□□□ 0.39
SNRNP40-203ENST00000463988 ECM2O94769 699 aaPredicted RBP17.5■□□□□ 0.39
SNRNP40-203ENST00000463988 HLA-DOAP06340 250 aa17.5■□□□□ 0.39
SNRNP40-203ENST00000463988 PRKCZQ05513 592 aa17.5■□□□□ 0.39
SNRNP40-203ENST00000463988 CRACR2BQ8N4Y2 399 aaPredicted RBP17.5■□□□□ 0.39
SNRNP40-203ENST00000463988 KIF1BPQ96EK5 621 aa17.5■□□□□ 0.39
SNRNP40-203ENST00000463988 TRIM34Q9BYJ4 488 aa17.5■□□□□ 0.39
SNRNP40-203ENST00000463988 DNAJC18Q9H819 358 aa17.5■□□□□ 0.39
SNRNP40-203ENST00000463988 PALD1Q9ULE6 856 aa17.5■□□□□ 0.39
SNRNP40-203ENST00000463988 CDK5RAP2Q96SN8 1893 aa17.5■□□□□ 0.39
SNRNP40-203ENST00000463988 SIPA1L1O43166 1804 aa17.49■□□□□ 0.39
SNRNP40-203ENST00000463988 MKI67P46013 3256 aaKnown RBP17.49■□□□□ 0.39
SNRNP40-203ENST00000463988 GCLCP48506 637 aaPredicted RBP17.49■□□□□ 0.39
SNRNP40-203ENST00000463988 HMGCS2P54868 508 aa17.49■□□□□ 0.39
SNRNP40-203ENST00000463988 DYNLL1P63167 89 aaKnown RBP17.49■□□□□ 0.39
SNRNP40-203ENST00000463988 TTF1Q15361 905 aaPredicted RBP17.49■□□□□ 0.39
SNRNP40-203ENST00000463988 FAM110CQ1W6H9 321 aa17.49■□□□□ 0.39
SNRNP40-203ENST00000463988 CLASRPQ8N2M8 674 aaKnown RBP17.49■□□□□ 0.39
SNRNP40-203ENST00000463988 MAGEB6Q8N7X4 407 aa17.49■□□□□ 0.39
SNRNP40-203ENST00000463988 SLAIN1Q8ND83 568 aa17.49■□□□□ 0.39
SNRNP40-203ENST00000463988 PPIL4Q8WUA2 492 aaKnown RBP eCLIP17.49■□□□□ 0.39
SNRNP40-203ENST00000463988 ANTXR1Q9H6X2 564 aa17.49■□□□□ 0.39
SNRNP40-203ENST00000463988 COG6Q9Y2V7 657 aa17.49■□□□□ 0.39
SNRNP40-203ENST00000463988 ATAD5Q96QE3 1844 aa17.49■□□□□ 0.39
SNRNP40-203ENST00000463988 LOC285556D6RIA3 1793 aa17.48■□□□□ 0.39
SNRNP40-203ENST00000463988 MGAMO43451 1857 aa17.48■□□□□ 0.39
SNRNP40-203ENST00000463988 C19orf81C9J6K1 198 aa17.48■□□□□ 0.39
SNRNP40-203ENST00000463988 RAB11FIP3O75154 756 aa17.48■□□□□ 0.39
SNRNP40-203ENST00000463988 BACE1P56817 501 aa17.48■□□□□ 0.39
SNRNP40-203ENST00000463988 IRF5Q13568 498 aa17.48■□□□□ 0.39
SNRNP40-203ENST00000463988 SIRT2Q8IXJ6 389 aa17.48■□□□□ 0.39
SNRNP40-203ENST00000463988 ANKRD13CQ8N6S4 541 aa17.48■□□□□ 0.39
SNRNP40-203ENST00000463988 NKX2-3Q8TAU0 364 aa17.48■□□□□ 0.39
SNRNP40-203ENST00000463988 IL1RAPL2Q9NP60 686 aa17.48■□□□□ 0.39
SNRNP40-203ENST00000463988 RCAN3Q9UKA8 241 aa17.48■□□□□ 0.39
SNRNP40-203ENST00000463988 TNPO2O14787 897 aaKnown RBP17.47■□□□□ 0.39
SNRNP40-203ENST00000463988 MYCP01106 439 aaPredicted RBP17.47■□□□□ 0.39
SNRNP40-203ENST00000463988 UBXN2AP68543 259 aa17.47■□□□□ 0.39
SNRNP40-203ENST00000463988 MTFR1Q15390 333 aa17.47■□□□□ 0.39
SNRNP40-203ENST00000463988 MIGA1Q8NAN2 632 aa17.47■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms