RNA–Protein interactions for RNA: ENST00000422245.5

SQSTM1-203, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-203ENST00000422245 OSBPP22059 807 aa14.14□□□□□ -0.15
SQSTM1-203ENST00000422245 FCGRTP55899 365 aa14.14□□□□□ -0.15
SQSTM1-203ENST00000422245 SLC4A8Q2Y0W8 1093 aa14.14□□□□□ -0.15
SQSTM1-203ENST00000422245 ERC1Q8IUD2 1116 aa14.14□□□□□ -0.15
SQSTM1-203ENST00000422245 SH3RF3Q8TEJ3 882 aaPredicted RBP14.14□□□□□ -0.15
SQSTM1-203ENST00000422245 AATFQ9NY61 560 aaKnown RBP eCLIP14.14□□□□□ -0.151e-6■□□□□ 10.1
SQSTM1-203ENST00000422245 AGTPBP1Q9UPW5 1226 aa14.14□□□□□ -0.15
SQSTM1-203ENST00000422245 MGAMO43451 1857 aa14.14□□□□□ -0.15
SQSTM1-203ENST00000422245 CDK5RAP2Q96SN8 1893 aa14.13□□□□□ -0.15
SQSTM1-203ENST00000422245 FAM196BA6NMK8 535 aa14.13□□□□□ -0.15
SQSTM1-203ENST00000422245 EN2P19622 333 aaPredicted RBP14.13□□□□□ -0.15
SQSTM1-203ENST00000422245 CTGFP29279 349 aa14.13□□□□□ -0.15
SQSTM1-203ENST00000422245 ZAP70P43403 619 aa14.13□□□□□ -0.15
SQSTM1-203ENST00000422245 PPP4CP60510 307 aa14.13□□□□□ -0.15
SQSTM1-203ENST00000422245 PROCA1Q8NCQ7 364 aaPredicted RBP14.13□□□□□ -0.15
SQSTM1-203ENST00000422245 RAET1EQ8TD07 263 aa14.13□□□□□ -0.15
SQSTM1-203ENST00000422245 SMCR8Q8TEV9 937 aaPredicted RBP14.13□□□□□ -0.15
SQSTM1-203ENST00000422245 SH3TC2Q8TF17 1288 aa14.13□□□□□ -0.15
SQSTM1-203ENST00000422245 TLR7Q9NYK1 1049 aaKnown RBP14.13□□□□□ -0.15
SQSTM1-203ENST00000422245 PI4KBQ9UBF8 816 aa14.13□□□□□ -0.15
SQSTM1-203ENST00000422245 PNMA3Q9UL41 463 aa14.13□□□□□ -0.15
SQSTM1-203ENST00000422245 LOC285556D6RIA3 1793 aa14.13□□□□□ -0.15
SQSTM1-203ENST00000422245 FLT1P17948 1338 aa14.13□□□□□ -0.15
SQSTM1-203ENST00000422245 MYPNQ86TC9 1320 aa14.13□□□□□ -0.15
SQSTM1-203ENST00000422245 CENPFP49454 3210 aa14.13□□□□□ -0.15
SQSTM1-203ENST00000422245 CAP2P40123 477 aa14.12□□□□□ -0.15
SQSTM1-203ENST00000422245 HSP90AB4PQ58FF6 505 aa14.12□□□□□ -0.15
SQSTM1-203ENST00000422245 TMED8Q6PL24 325 aaPredicted RBP14.12□□□□□ -0.15
SQSTM1-203ENST00000422245 ADGRA1Q86SQ6 560 aa14.12□□□□□ -0.15
SQSTM1-203ENST00000422245 CCDC84Q86UT8 332 aaPredicted RBP14.12□□□□□ -0.15
SQSTM1-203ENST00000422245 CERS3Q8IU89 383 aa14.12□□□□□ -0.15
SQSTM1-203ENST00000422245 ZNF280CQ8ND82 737 aa14.12□□□□□ -0.15
SQSTM1-203ENST00000422245 PANK1Q8TE04 598 aa14.12□□□□□ -0.15
SQSTM1-203ENST00000422245 EAF2Q96CJ1 260 aaPredicted RBP14.12□□□□□ -0.15
SQSTM1-203ENST00000422245 PIH1D3Q9NQM4 214 aaKnown RBP14.12□□□□□ -0.15
SQSTM1-203ENST00000422245 FRMD4AQ9P2Q2 1039 aaPredicted RBP14.12□□□□□ -0.15
SQSTM1-203ENST00000422245 SIPA1L1O43166 1804 aa14.12□□□□□ -0.15
SQSTM1-203ENST00000422245 MYO5AQ9Y4I1 1855 aaKnown RBP14.12□□□□□ -0.15
SQSTM1-203ENST00000422245 ECM2O94769 699 aaPredicted RBP14.11□□□□□ -0.15
SQSTM1-203ENST00000422245 GRK4P32298 578 aa14.11□□□□□ -0.15
SQSTM1-203ENST00000422245 MAPKAPK5Q8IW41 473 aa14.11□□□□□ -0.15
SQSTM1-203ENST00000422245 TRIM34Q9BYJ4 488 aa14.11□□□□□ -0.15
SQSTM1-203ENST00000422245 CCDC8Q9H0W5 538 aaPredicted RBP14.11□□□□□ -0.15
SQSTM1-203ENST00000422245 AS3MTQ9HBK9 375 aa14.11□□□□□ -0.15
SQSTM1-203ENST00000422245 USP17L5A8MUK1 530 aa14.1□□□□□ -0.15
SQSTM1-203ENST00000422245 IDH1O75874 414 aaKnown RBP14.1□□□□□ -0.15
SQSTM1-203ENST00000422245 MYCP01106 439 aaPredicted RBP14.1□□□□□ -0.15
SQSTM1-203ENST00000422245 PRKCZQ05513 592 aa14.1□□□□□ -0.15
SQSTM1-203ENST00000422245 SPP2Q13103 211 aa14.1□□□□□ -0.15
SQSTM1-203ENST00000422245 PABPC4Q13310 644 aaKnown RBP eCLIP14.1□□□□□ -0.15
SQSTM1-203ENST00000422245 AACSQ86V21 672 aa14.1□□□□□ -0.15
SQSTM1-203ENST00000422245 SLAIN1Q8ND83 568 aa14.1□□□□□ -0.15
SQSTM1-203ENST00000422245 TGFBRAP1Q8WUH2 860 aa14.1□□□□□ -0.15
SQSTM1-203ENST00000422245 GCC1Q96CN9 775 aa14.1□□□□□ -0.15
SQSTM1-203ENST00000422245 GINM1Q9NU53 330 aa14.1□□□□□ -0.15
SQSTM1-203ENST00000422245 EXOC6BQ9Y2D4 811 aa14.1□□□□□ -0.15
SQSTM1-203ENST00000422245 HLA-DOAP06340 250 aa14.09□□□□□ -0.15
SQSTM1-203ENST00000422245 ASNSP08243 561 aa14.09□□□□□ -0.15
SQSTM1-203ENST00000422245 CYP7A1P22680 504 aa14.09□□□□□ -0.15
SQSTM1-203ENST00000422245 HMGCS2P54868 508 aa14.09□□□□□ -0.15
SQSTM1-203ENST00000422245 FAM110CQ1W6H9 321 aa14.09□□□□□ -0.15
SQSTM1-203ENST00000422245 TREML2Q5T2D2 321 aa14.09□□□□□ -0.15
SQSTM1-203ENST00000422245 METTL16Q86W50 562 aaKnown RBP14.09□□□□□ -0.15
SQSTM1-203ENST00000422245 CRACR2BQ8N4Y2 399 aaPredicted RBP14.09□□□□□ -0.15
SQSTM1-203ENST00000422245 DNAJC18Q9H819 358 aa14.09□□□□□ -0.15
SQSTM1-203ENST00000422245 DDX19BQ9UMR2 479 aa14.09□□□□□ -0.15
SQSTM1-203ENST00000422245 TNPO2O14787 897 aaKnown RBP14.08□□□□□ -0.16
SQSTM1-203ENST00000422245 HMMRO75330 724 aa14.08□□□□□ -0.16
SQSTM1-203ENST00000422245 GCLCP48506 637 aaPredicted RBP14.08□□□□□ -0.16
SQSTM1-203ENST00000422245 UBXN2AP68543 259 aa14.08□□□□□ -0.16
SQSTM1-203ENST00000422245 MAP3K12Q12852 859 aa14.08□□□□□ -0.16
SQSTM1-203ENST00000422245 RRP1BQ14684 758 aaKnown RBP14.08□□□□□ -0.16
SQSTM1-203ENST00000422245 SH3D19Q5HYK7 790 aa14.08□□□□□ -0.16
SQSTM1-203ENST00000422245 FOXP4Q8IVH2 680 aaPredicted RBP14.08□□□□□ -0.16
SQSTM1-203ENST00000422245 NKX2-3Q8TAU0 364 aa14.08□□□□□ -0.16
SQSTM1-203ENST00000422245 WDR18Q9BV38 432 aa14.08□□□□□ -0.16
SQSTM1-203ENST00000422245 BRCA2P51587 3418 aa14.08□□□□□ -0.16
SQSTM1-203ENST00000422245 MTFR1Q15390 333 aa14.07□□□□□ -0.16
SQSTM1-203ENST00000422245 RPAP2Q8IXW5 612 aaPredicted RBP14.07□□□□□ -0.16
SQSTM1-203ENST00000422245 ANKRD13CQ8N6S4 541 aa14.07□□□□□ -0.16
SQSTM1-203ENST00000422245 MAGEB6Q8N7X4 407 aa14.07□□□□□ -0.16
SQSTM1-203ENST00000422245 RHPN1Q8TCX5 695 aa14.07□□□□□ -0.16
SQSTM1-203ENST00000422245 CHMP4BQ9H444 224 aaKnown RBP14.07□□□□□ -0.16
SQSTM1-203ENST00000422245 BIN2Q9UBW5 565 aaPredicted RBP14.07□□□□□ -0.16
SQSTM1-203ENST00000422245 PALD1Q9ULE6 856 aa14.07□□□□□ -0.16
SQSTM1-203ENST00000422245 MYH1P12882 1939 aa14.06□□□□□ -0.16
SQSTM1-203ENST00000422245 CCL5P13501 91 aa14.06□□□□□ -0.16
SQSTM1-203ENST00000422245 FLT3LGP49771 235 aa14.06□□□□□ -0.16
SQSTM1-203ENST00000422245 BACE1P56817 501 aa14.06□□□□□ -0.16
SQSTM1-203ENST00000422245 DYNLL1P63167 89 aaKnown RBP14.06□□□□□ -0.16
SQSTM1-203ENST00000422245 IRF5Q13568 498 aa14.06□□□□□ -0.16
SQSTM1-203ENST00000422245 MTMR2Q13614 643 aa14.06□□□□□ -0.16
SQSTM1-203ENST00000422245 TTF1Q15361 905 aaPredicted RBP14.06□□□□□ -0.16
SQSTM1-203ENST00000422245 CLASRPQ8N2M8 674 aaKnown RBP14.06□□□□□ -0.16
SQSTM1-203ENST00000422245 MIGA1Q8NAN2 632 aa14.06□□□□□ -0.16
SQSTM1-203ENST00000422245 PXYLP1Q8TE99 480 aa14.06□□□□□ -0.16
SQSTM1-203ENST00000422245 COA7Q96BR5 231 aa14.06□□□□□ -0.16
SQSTM1-203ENST00000422245 SHISA4Q96DD7 197 aa14.06□□□□□ -0.16
SQSTM1-203ENST00000422245 KIF1BPQ96EK5 621 aa14.06□□□□□ -0.16
SQSTM1-203ENST00000422245 EHD4Q9H223 541 aa14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms