RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 SLC9C1Q4G0N8 1177 aa14.24□□□□□ -0.13
CCDC88C-204ENST00000389857 RSPH3Q86UC2 560 aa14.24□□□□□ -0.13
CCDC88C-204ENST00000389857 BICC1Q9H694 974 aaKnown RBP14.24□□□□□ -0.13
CCDC88C-204ENST00000389857 TSNAXIP1Q2TAA8 658 aa14.23□□□□□ -0.13
CCDC88C-204ENST00000389857 HHATQ5VTY9 493 aa14.23□□□□□ -0.13
CCDC88C-204ENST00000389857 POTEDQ86YR6 584 aa14.23□□□□□ -0.13
CCDC88C-204ENST00000389857 CEBPAP49715 358 aaPredicted RBP14.23□□□□□ -0.13
CCDC88C-204ENST00000389857 DNM2P50570 870 aa14.23□□□□□ -0.13
CCDC88C-204ENST00000389857 PAK1Q13153 545 aa14.23□□□□□ -0.13
CCDC88C-204ENST00000389857 ABCC1P33527 1531 aa14.23□□□□□ -0.13
CCDC88C-204ENST00000389857 CARD10Q9BWT7 1032 aa14.23□□□□□ -0.13
CCDC88C-204ENST00000389857 RPS6KB1P23443 525 aa14.23□□□□□ -0.13
CCDC88C-204ENST00000389857 SECISBP2LQ93073 1101 aaKnown RBP14.23□□□□□ -0.13
CCDC88C-204ENST00000389857 ERO1AQ96HE7 468 aa14.23□□□□□ -0.13
CCDC88C-204ENST00000389857 NCAPGQ9BPX3 1015 aa14.23□□□□□ -0.13
CCDC88C-204ENST00000389857 BCAP29Q9UHQ4 241 aa14.23□□□□□ -0.13
CCDC88C-204ENST00000389857 P4HA1P13674 534 aa14.23□□□□□ -0.13
CCDC88C-204ENST00000389857 CEP85Q6P2H3 762 aa14.23□□□□□ -0.13
CCDC88C-204ENST00000389857 ARHGEF2Q92974 986 aaKnown RBP14.23□□□□□ -0.13
CCDC88C-204ENST00000389857 CPSF2Q9P2I0 782 aaKnown RBP14.23□□□□□ -0.13
CCDC88C-204ENST00000389857 ZFYVE9O95405 1425 aa14.23□□□□□ -0.13
CCDC88C-204ENST00000389857 A0A1B0GVL5 298 aa14.23□□□□□ -0.13
CCDC88C-204ENST00000389857 BUB1BO60566 1050 aaPredicted RBP14.23□□□□□ -0.13
CCDC88C-204ENST00000389857 KIF11P52732 1056 aa14.23□□□□□ -0.13
CCDC88C-204ENST00000389857 TRAPPC3LQ5T215 181 aa14.23□□□□□ -0.13
CCDC88C-204ENST00000389857 LZTS2Q9BRK4 669 aa14.23□□□□□ -0.13
CCDC88C-204ENST00000389857 IVNS1ABPQ9Y6Y0 642 aa14.23□□□□□ -0.13
CCDC88C-204ENST00000389857 PUM3Q15397 648 aaKnown RBP14.22□□□□□ -0.13
CCDC88C-204ENST00000389857 DCUN1D2Q6PH85 259 aa14.22□□□□□ -0.13
CCDC88C-204ENST00000389857 C10orf67Q8IYJ2 551 aa14.22□□□□□ -0.13
CCDC88C-204ENST00000389857 CSGALNACT2Q8N6G5 542 aa14.22□□□□□ -0.13
CCDC88C-204ENST00000389857 ATP2A3Q93084 1043 aa14.22□□□□□ -0.13
CCDC88C-204ENST00000389857 FLT4P35916 1363 aa14.22□□□□□ -0.13
CCDC88C-204ENST00000389857 A0A1B0GUA9 196 aa14.22□□□□□ -0.13
CCDC88C-204ENST00000389857 A0A1B0GUL7 405 aa14.22□□□□□ -0.13
CCDC88C-204ENST00000389857 YWHAEP62258 255 aaKnown RBP14.22□□□□□ -0.13
CCDC88C-204ENST00000389857 MTMR3Q13615 1198 aa14.22□□□□□ -0.13
CCDC88C-204ENST00000389857 NFATC2IPQ8NCF5 419 aa14.22□□□□□ -0.13
CCDC88C-204ENST00000389857 VPS16Q9H269 839 aa14.22□□□□□ -0.13
CCDC88C-204ENST00000389857 AZI2Q9H6S1 392 aa14.22□□□□□ -0.13
CCDC88C-204ENST00000389857 HACE1Q8IYU2 909 aa14.22□□□□□ -0.13
CCDC88C-204ENST00000389857 MRRFQ96E11 262 aaKnown RBP14.22□□□□□ -0.13
CCDC88C-204ENST00000389857 PARP2Q9UGN5 583 aa14.22□□□□□ -0.13
CCDC88C-204ENST00000389857 RFX1P22670 979 aa14.22□□□□□ -0.13
CCDC88C-204ENST00000389857 PIK3AP1Q6ZUJ8 805 aa14.22□□□□□ -0.13
CCDC88C-204ENST00000389857 C8orf58Q8NAV2 365 aa14.22□□□□□ -0.13
CCDC88C-204ENST00000389857 DCAF5Q96JK2 942 aa14.22□□□□□ -0.13
CCDC88C-204ENST00000389857 RIOK1Q9BRS2 568 aaKnown RBP14.22□□□□□ -0.13
CCDC88C-204ENST00000389857 ASIC3Q9UHC3 531 aa14.22□□□□□ -0.13
CCDC88C-204ENST00000389857 C11orf95C9JLR9 678 aaPredicted RBP14.22□□□□□ -0.13
CCDC88C-204ENST00000389857 IRX5P78411 483 aaPredicted RBP14.22□□□□□ -0.13
CCDC88C-204ENST00000389857 CCDC89Q8N998 374 aa14.22□□□□□ -0.13
CCDC88C-204ENST00000389857 KCNG1Q9UIX4 513 aa14.22□□□□□ -0.13
CCDC88C-204ENST00000389857 DUOX2Q9NRD8 1548 aa14.22□□□□□ -0.13
CCDC88C-204ENST00000389857 ECM2O94769 699 aaPredicted RBP14.22□□□□□ -0.13
CCDC88C-204ENST00000389857 GBP7Q8N8V2 638 aaPredicted RBP14.22□□□□□ -0.13
CCDC88C-204ENST00000389857 HELBQ8NG08 1087 aaPredicted RBP14.22□□□□□ -0.13
CCDC88C-204ENST00000389857 GJA3Q9Y6H8 435 aa14.22□□□□□ -0.13
CCDC88C-204ENST00000389857 CUTAO60888 179 aa14.21□□□□□ -0.13
CCDC88C-204ENST00000389857 NCAPH2Q6IBW4 605 aa14.21□□□□□ -0.13
CCDC88C-204ENST00000389857 KRBA2Q6ZNG9 492 aa14.21□□□□□ -0.13
CCDC88C-204ENST00000389857 PLB1Q6P1J6 1458 aa14.21□□□□□ -0.13
CCDC88C-204ENST00000389857 ZBED4O75132 1171 aa14.21□□□□□ -0.13
CCDC88C-204ENST00000389857 PRPF6O94906 941 aaKnown RBP14.21□□□□□ -0.13
CCDC88C-204ENST00000389857 FCHSD1Q86WN1 690 aa14.21□□□□□ -0.13
CCDC88C-204ENST00000389857 SMC5Q8IY18 1101 aa14.21□□□□□ -0.13
CCDC88C-204ENST00000389857 IMPACTQ9P2X3 320 aa14.21□□□□□ -0.13
CCDC88C-204ENST00000389857 KCNH3Q9ULD8 1083 aa14.21□□□□□ -0.13
CCDC88C-204ENST00000389857 DNM3Q9UQ16 869 aa14.21□□□□□ -0.13
CCDC88C-204ENST00000389857 DCTPP1Q9H773 170 aa14.21□□□□□ -0.13
CCDC88C-204ENST00000389857 RIOK3O14730 519 aaKnown RBP14.21□□□□□ -0.13
CCDC88C-204ENST00000389857 ANO1Q5XXA6 986 aa14.21□□□□□ -0.13
CCDC88C-204ENST00000389857 CASC4Q6P4E1 433 aa14.21□□□□□ -0.13
CCDC88C-204ENST00000389857 RASSF4Q9H2L5 321 aa14.21□□□□□ -0.13
CCDC88C-204ENST00000389857 CD2APQ9Y5K6 639 aa14.21□□□□□ -0.13
CCDC88C-204ENST00000389857 MYCLP12524 364 aaPredicted RBP14.21□□□□□ -0.14
CCDC88C-204ENST00000389857 SLC12A2P55011 1212 aa14.21□□□□□ -0.14
CCDC88C-204ENST00000389857 XRCC6P12956 609 aaKnown RBP eCLIP14.2□□□□□ -0.14
CCDC88C-204ENST00000389857 LAMC3Q9Y6N6 1575 aa14.2□□□□□ -0.14
CCDC88C-204ENST00000389857 CLGNO14967 610 aa14.2□□□□□ -0.14
CCDC88C-204ENST00000389857 ZBTB24O43167 697 aaPredicted RBP14.2□□□□□ -0.14
CCDC88C-204ENST00000389857 ADCY7P51828 1080 aa14.2□□□□□ -0.14
CCDC88C-204ENST00000389857 CNBD1Q8NA66 436 aa14.2□□□□□ -0.14
CCDC88C-204ENST00000389857 UTP18Q9Y5J1 556 aaKnown RBP eCLIP14.2□□□□□ -0.14
CCDC88C-204ENST00000389857 UFL1O94874 794 aa14.2□□□□□ -0.14
CCDC88C-204ENST00000389857 CHMLP26374 656 aa14.2□□□□□ -0.14
CCDC88C-204ENST00000389857 EIF4A2Q14240 407 aaKnown RBP14.2□□□□□ -0.14
CCDC88C-204ENST00000389857 IQCDQ96DY2 449 aa14.2□□□□□ -0.14
CCDC88C-204ENST00000389857 NDUFAB1O14561 156 aa14.2□□□□□ -0.14
CCDC88C-204ENST00000389857 NUCKS1Q9H1E3 243 aaKnown RBP14.2□□□□□ -0.14
CCDC88C-204ENST00000389857 CTTNBP2NLQ9P2B4 639 aa14.2□□□□□ -0.14
CCDC88C-204ENST00000389857 NOC2LQ9Y3T9 749 aaKnown RBP14.2□□□□□ -0.14
CCDC88C-204ENST00000389857 PCDHB15Q9Y5E8 787 aa14.2□□□□□ -0.14
CCDC88C-204ENST00000389857 FLOT1O75955 427 aa14.2□□□□□ -0.14
CCDC88C-204ENST00000389857 PPP2R5DQ14738 602 aa14.2□□□□□ -0.14
CCDC88C-204ENST00000389857 RBSNQ9H1K0 784 aa14.2□□□□□ -0.14
CCDC88C-204ENST00000389857 HIBADHP31937 336 aaKnown RBP14.2□□□□□ -0.14
CCDC88C-204ENST00000389857 CALCRLQ16602 461 aa14.2□□□□□ -0.14
CCDC88C-204ENST00000389857 PARP10Q53GL7 1025 aa14.2□□□□□ -0.14
CCDC88C-204ENST00000389857 HVCN1Q96D96 273 aa14.2□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms