RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 FNBP1Q96RU3 617 aa4.62□□□□□ -1.67
USH2A-202ENST00000366942 TCF25Q9BQ70 676 aa4.62□□□□□ -1.67
USH2A-202ENST00000366942 DHX36Q9H2U1 1008 aaKnown RBP4.62□□□□□ -1.67
USH2A-202ENST00000366942 FANCFQ9NPI8 374 aa4.62□□□□□ -1.67
USH2A-202ENST00000366942 TMEM39AQ9NV64 488 aa4.62□□□□□ -1.67
USH2A-202ENST00000366942 ZNRF3Q9ULT6 936 aa4.62□□□□□ -1.67
USH2A-202ENST00000366942 OVOS2A0A0G2JMS6 1433 aa4.62□□□□□ -1.67
USH2A-202ENST00000366942 OVOS2A0A0J9YW53 1432 aa4.62□□□□□ -1.67
USH2A-202ENST00000366942 OVOS2Q6IE36 1432 aa4.62□□□□□ -1.67
USH2A-202ENST00000366942 GOLGA8AA7E2F4 631 aa4.62□□□□□ -1.67
USH2A-202ENST00000366942 NEMP1O14524 444 aa4.62□□□□□ -1.67
USH2A-202ENST00000366942 ENC1O14682 589 aa4.62□□□□□ -1.67
USH2A-202ENST00000366942 PDE8AO60658 829 aa4.62□□□□□ -1.67
USH2A-202ENST00000366942 HEXIM1O94992 359 aaKnown RBP4.62□□□□□ -1.67
USH2A-202ENST00000366942 PEX6Q13608 980 aa4.62□□□□□ -1.67
USH2A-202ENST00000366942 MFSD6Q6ZSS7 791 aa4.62□□□□□ -1.67
USH2A-202ENST00000366942 CEP57L1Q8IYX8 460 aa4.62□□□□□ -1.67
USH2A-202ENST00000366942 THEM5Q8N1Q8 247 aa4.62□□□□□ -1.67
USH2A-202ENST00000366942 HDDC3Q8N4P3 179 aa4.62□□□□□ -1.67
USH2A-202ENST00000366942 CSGALNACT1Q8TDX6 532 aa4.62□□□□□ -1.67
USH2A-202ENST00000366942 SEPT8Q92599 483 aa4.62□□□□□ -1.67
USH2A-202ENST00000366942 TMEM169Q96HH4 297 aa4.62□□□□□ -1.67
USH2A-202ENST00000366942 SEZ6LQ9BYH1 1024 aa4.62□□□□□ -1.67
USH2A-202ENST00000366942 XDHP47989 1333 aa4.62□□□□□ -1.67
USH2A-202ENST00000366942 DDX11L8A8MPP1 907 aa4.62□□□□□ -1.67
USH2A-202ENST00000366942 C21orf2O43822 256 aa4.62□□□□□ -1.67
USH2A-202ENST00000366942 ALDH1A2O94788 518 aa4.62□□□□□ -1.67
USH2A-202ENST00000366942 CT47B1P0C2W7 299 aaPredicted RBP4.62□□□□□ -1.67
USH2A-202ENST00000366942 MYCLP12524 364 aaPredicted RBP4.62□□□□□ -1.67
USH2A-202ENST00000366942 SKIP12755 728 aa4.62□□□□□ -1.67
USH2A-202ENST00000366942 SP4Q02446 784 aa4.62□□□□□ -1.67
USH2A-202ENST00000366942 PTH1RQ03431 593 aa4.62□□□□□ -1.67
USH2A-202ENST00000366942 STK38Q15208 465 aa4.62□□□□□ -1.67
USH2A-202ENST00000366942 EZH2Q15910 746 aaKnown RBP4.62□□□□□ -1.67
USH2A-202ENST00000366942 BRINP3Q76B58 766 aa4.62□□□□□ -1.67
USH2A-202ENST00000366942 COPS6Q7L5N1 327 aa4.62□□□□□ -1.67
USH2A-202ENST00000366942 RUFY1Q96T51 708 aa4.62□□□□□ -1.67
USH2A-202ENST00000366942 ANO3Q9BYT9 981 aa4.62□□□□□ -1.67
USH2A-202ENST00000366942 VAT1LQ9HCJ6 419 aa4.62□□□□□ -1.67
USH2A-202ENST00000366942 OLFML3Q9NRN5 406 aa4.62□□□□□ -1.67
USH2A-202ENST00000366942 MCM9Q9NXL9 1143 aa4.62□□□□□ -1.67
USH2A-202ENST00000366942 CCDC171Q6TFL3 1326 aa4.61□□□□□ -1.67
USH2A-202ENST00000366942 POLR2DO15514 142 aaKnown RBP4.61□□□□□ -1.67
USH2A-202ENST00000366942 ZNF18P17022 549 aa4.61□□□□□ -1.67
USH2A-202ENST00000366942 STARD3Q14849 445 aa4.61□□□□□ -1.67
USH2A-202ENST00000366942 KANK3Q6NY19 840 aa4.61□□□□□ -1.67
USH2A-202ENST00000366942 ZNF790Q6PG37 636 aa4.61□□□□□ -1.67
USH2A-202ENST00000366942 SASS6Q6UVJ0 657 aa4.61□□□□□ -1.67
USH2A-202ENST00000366942 RSRC2Q7L4I2 434 aaKnown RBP4.61□□□□□ -1.67
USH2A-202ENST00000366942 FAM114A1Q8IWE2 563 aa4.61□□□□□ -1.67
USH2A-202ENST00000366942 MICALL2Q8IY33 904 aa4.61□□□□□ -1.67
USH2A-202ENST00000366942 SYNE4Q8N205 404 aa4.61□□□□□ -1.67
USH2A-202ENST00000366942 RAB42Q8N4Z0 105 aa4.61□□□□□ -1.67
USH2A-202ENST00000366942 FAM114A2Q9NRY5 505 aa4.61□□□□□ -1.67
USH2A-202ENST00000366942 USP40Q9NVE5 1235 aa4.61□□□□□ -1.67
USH2A-202ENST00000366942 LSM7Q9UK45 103 aaKnown RBP4.61□□□□□ -1.67
USH2A-202ENST00000366942 SLC12A7Q9Y666 1083 aa4.61□□□□□ -1.67
USH2A-202ENST00000366942 MRVI1Q9Y6F6 885 aa4.61□□□□□ -1.67
USH2A-202ENST00000366942 IGF1RP08069 1367 aa4.61□□□□□ -1.67
USH2A-202ENST00000366942 CES2O00748 559 aa4.61□□□□□ -1.67
USH2A-202ENST00000366942 ZNF213O14771 459 aa4.61□□□□□ -1.67
USH2A-202ENST00000366942 ERN1O75460 977 aaKnown RBP4.61□□□□□ -1.67
USH2A-202ENST00000366942 STK10O94804 968 aaKnown RBP4.61□□□□□ -1.67
USH2A-202ENST00000366942 AMHP03971 560 aa4.61□□□□□ -1.67
USH2A-202ENST00000366942 FCER1AP12319 257 aa4.61□□□□□ -1.67
USH2A-202ENST00000366942 PPIGQ13427 754 aaKnown RBP eCLIP4.61□□□□□ -1.67
USH2A-202ENST00000366942 PPP2R5AQ15172 486 aa4.61□□□□□ -1.67
USH2A-202ENST00000366942 ARHGEF16Q5VV41 709 aa4.61□□□□□ -1.67
USH2A-202ENST00000366942 PDZD4Q76G19 769 aaPredicted RBP4.61□□□□□ -1.67
USH2A-202ENST00000366942 PODNQ7Z5L7 613 aa4.61□□□□□ -1.67
USH2A-202ENST00000366942 DNAAF4Q8WXU2 420 aa4.61□□□□□ -1.67
USH2A-202ENST00000366942 FAM212AQ96EL1 285 aa4.61□□□□□ -1.67
USH2A-202ENST00000366942 YME1L1Q96TA2 773 aa4.61□□□□□ -1.67
USH2A-202ENST00000366942 KIF9Q9HAQ2 790 aa4.61□□□□□ -1.67
USH2A-202ENST00000366942 SAP30BPQ9UHR5 308 aaKnown RBP4.61□□□□□ -1.67
USH2A-202ENST00000366942 MAGEB6P1A0A0J9YX57 407 aa4.61□□□□□ -1.67
USH2A-202ENST00000366942 GIPC1O14908 333 aa4.61□□□□□ -1.67
USH2A-202ENST00000366942 NCK2O43639 380 aa4.61□□□□□ -1.67
USH2A-202ENST00000366942 SMARCA5O60264 1052 aaPredicted RBP4.61□□□□□ -1.67
USH2A-202ENST00000366942 KLHL41O60662 606 aa4.61□□□□□ -1.67
USH2A-202ENST00000366942 RPS6KA4O75676 772 aa4.61□□□□□ -1.67
USH2A-202ENST00000366942 TRAPPC10P48553 1259 aa4.61□□□□□ -1.67
USH2A-202ENST00000366942 CASP6P55212 293 aa4.61□□□□□ -1.67
USH2A-202ENST00000366942 CYP4A22Q5TCH4 519 aa4.61□□□□□ -1.67
USH2A-202ENST00000366942 KCNV1Q6PIU1 500 aa4.61□□□□□ -1.67
USH2A-202ENST00000366942 EFCAB13Q8IY85 973 aa4.61□□□□□ -1.67
USH2A-202ENST00000366942 IP6K1Q92551 441 aa4.61□□□□□ -1.67
USH2A-202ENST00000366942 TBRG4Q969Z0 631 aaKnown RBP eCLIP4.61□□□□□ -1.67
USH2A-202ENST00000366942 TSHZ2Q9NRE2 1034 aa4.61□□□□□ -1.67
USH2A-202ENST00000366942 CPSF3Q9UKF6 684 aaKnown RBP4.61□□□□□ -1.67
USH2A-202ENST00000366942 ZSCAN21Q9Y5A6 473 aaPredicted RBP4.61□□□□□ -1.67
USH2A-202ENST00000366942 GTF3C3Q9Y5Q9 886 aa4.61□□□□□ -1.67
USH2A-202ENST00000366942 IRS2Q9Y4H2 1338 aa4.61□□□□□ -1.67
USH2A-202ENST00000366942 RNASEH1O60930 286 aaKnown RBP4.61□□□□□ -1.67
USH2A-202ENST00000366942 RAB11FIP3O75154 756 aa4.61□□□□□ -1.67
USH2A-202ENST00000366942 IARSP41252 1262 aaKnown RBP4.61□□□□□ -1.67
USH2A-202ENST00000366942 ARMC6Q6NXE6 501 aa4.61□□□□□ -1.67
USH2A-202ENST00000366942 TTC23LQ6PF05 361 aa4.61□□□□□ -1.67
USH2A-202ENST00000366942 THNSL1Q8IYQ7 743 aa4.61□□□□□ -1.67
USH2A-202ENST00000366942 SLC32A1Q9H598 525 aa4.61□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms